EMLSAG00000000563, EMLSAG00000000563-683329 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000563
Unique NameEMLSAG00000000563-683329
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000563 vs. C. finmarchicus
Match: gi|592843942|gb|GAXK01113602.1| (TSA: Calanus finmarchicus comp894031_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.034e-1
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = 0
Query:   39 DSRRCVKCKRVHPLSLMLKNQLQPYSF 65
            + RRC KCKRV  LS+     +Q Y F
Sbjct:  580 ERRRCTKCKRVCKLSIFGLRNIQSYLF 660          
BLAST of EMLSAG00000000563 vs. C. finmarchicus
Match: gi|592834951|gb|GAXK01122593.1| (TSA: Calanus finmarchicus comp508465_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.226e-1
Identity = 13/36 (36.11%), Postives = 23/36 (63.89%), Query Frame = 0
Query:   37 VSDSRRCVKCKRVHPLSLMLKNQLQPYSFNSKRKTP 72
            V+D+R+C + KR     L + N++QP+  +SK + P
Sbjct: 2538 VADNRQCERFKRETSELLNIANEMQPFVCSSKCQAP 2645          
BLAST of EMLSAG00000000563 vs. C. finmarchicus
Match: gi|592834950|gb|GAXK01122594.1| (TSA: Calanus finmarchicus comp508465_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.348e-1
Identity = 13/36 (36.11%), Postives = 23/36 (63.89%), Query Frame = 0
Query:   37 VSDSRRCVKCKRVHPLSLMLKNQLQPYSFNSKRKTP 72
            V+D+R+C + KR     L + N++QP+  +SK + P
Sbjct: 2538 VADNRQCERFKRETSELLNIANEMQPFVCSSKCQAP 2645          
BLAST of EMLSAG00000000563 vs. C. finmarchicus
Match: gi|592783397|gb|GAXK01171171.1| (TSA: Calanus finmarchicus comp1364163_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 8.880e-1
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0
Query:   16 LGAPIEGNELMTIYLPEKYFWVSDSR 41
            L AP+EG ++M + + +KY WV  SR
Sbjct:  240 LPAPLEGRQVMGMAMVDKYTWVLSSR 317          
BLAST of EMLSAG00000000563 vs. C. finmarchicus
Match: gi|592947542|gb|GAXK01011011.1| (TSA: Calanus finmarchicus comp635301_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.407e+0
Identity = 13/36 (36.11%), Postives = 18/36 (50.00%), Query Frame = 0
Query:   15 GLGAPIEGNELMTIYLPEKYFWVSDSRRCVKCKRVH 50
            GL   +  NE   +YLP K     DSR+  K K+ +
Sbjct:   58 GLNPDVSDNEETLVYLPTKKRKFDDSRKSPKSKKTN 165          
BLAST of EMLSAG00000000563 vs. L. salmonis peptides
Match: EMLSAP00000000563 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1093:275649:277380:1 gene:EMLSAG00000000563 transcript:EMLSAT00000000563 description:"maker-LSalAtl2s1093-snap-gene-1.17")

HSP 1 Score: 155.606 bits (392), Expect = 1.230e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MNSVPIESRRAYGLGLGAPIEGNELMTIYLPEKYFWVSDSRRCVKCKRVHPLSLMLKNQLQPYSFNSKRKTPSK 74
            MNSVPIESRRAYGLGLGAPIEGNELMTIYLPEKYFWVSDSRRCVKCKRVHPLSLMLKNQLQPYSFNSKRKTPSK
Sbjct:    1 MNSVPIESRRAYGLGLGAPIEGNELMTIYLPEKYFWVSDSRRCVKCKRVHPLSLMLKNQLQPYSFNSKRKTPSK 74          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000563 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000563 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592843942|gb|GAXK01113602.1|5.034e-148.15TSA: Calanus finmarchicus comp894031_c1_seq1 trans... [more]
gi|592834951|gb|GAXK01122593.1|5.226e-136.11TSA: Calanus finmarchicus comp508465_c0_seq1 trans... [more]
gi|592834950|gb|GAXK01122594.1|7.348e-136.11TSA: Calanus finmarchicus comp508465_c0_seq2 trans... [more]
gi|592783397|gb|GAXK01171171.1|8.880e-146.15TSA: Calanus finmarchicus comp1364163_c0_seq1 tran... [more]
gi|592947542|gb|GAXK01011011.1|3.407e+036.11TSA: Calanus finmarchicus comp635301_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000563 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005631.230e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1093:2756... [more]
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BLAST of EMLSAG00000000563 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000563 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000563 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000563 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1093supercontigLSalAtl2s1093:275649..277380 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1093-snap-gene-1.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000563 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000563EMLSAT00000000563-696410Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1093:275649..277380+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000563-683329 ID=EMLSAG00000000563-683329|Name=EMLSAG00000000563|organism=Lepeophtheirus salmonis|type=gene|length=1732bp|location=Sequence derived from alignment at LSalAtl2s1093:275649..277380+ (Lepeophtheirus salmonis)
AAGAAGTCAGTTCAAAACACAGCGAATATGTATATTTTTAGTCCTCATTA TGTCTATCGGTACTACAATTGGTCTTTGTGGATTTGATGAATTCATGTCC ACATTAGTGTTTGATGGCAAAATACTGACTGGATGCTGACAGTAACTAAG GTTTTGAAGGCTATTGCTCATAATGAAGTTCTACTCCCGAGTGGAGAAGT CAGAAAACAAAAGAGATAACTACCCAAGATACATGCACGTAAGATAATTT AACATAATCAAACAGACGTATTGTAACCTTCTTAACTATTCATGTAAGAG GCATAAGGGAGAAACTAGTAAAAATGTTTCCCAACATCATGATGTACAAA CAAGTTTTGGTACAAATCTCGAAACACGAATCCTGAAACAGTAAGTACAT AAAGCTTACATTCCCACCTTGTTTTCTCTTTTTCATTCCAGGACTTTTTA TAAGGTCTGTAGCTATTTGTCAATGTCACAAAGGCATCCTGACAATTTTT AACTGTGACAAGTAGTAATTGTTGTGAATAAGACCAAGATTTTTGTATCT AAATATATTCTGGTTCAGATGTTCTTCGAGAAGACCTACCAGGATTAAAT GTACTGGGCATTAGTCAAAAGATGGAACGCAGTGTCAGTGATCTCATTGG GATAACCCCACTAATATAGCAGCATAAAACACCATTGCCCCTCAGGTATA AATTCCAGTTGTCATTCCAAATACGACTTCTTTGTAATCTGTTGATATAT TGACATAGGCTTACGATGAATTGGTAAAGCTTGATAAGTGGGCCTTCTGA ATGTGCATCGAGATGTATCATCTGCAGAAAAGGCTTGCTTCGAAGATGTT CAAAGACTTGTAGAAACATAAACAAGAGCTCTCGTGGAAGAGGGCACCAC TAGAAACTGAATGTAAAAAGTACCCGGATCGTTTACAGTGGTCGCCAATA AGAGTAATGAATAGCGTTCCGATTGAATCCCGAAGAGCATATGGGCTAGG CTTAGGGGCTCCAATCGAAGGAAATGAGCTGATGACCATATATCTACCTG AAAAATATTTTTGGGTTAGTGACAGTAGAAGATGTGTTAAATGCAAGAGG GTTCATCCTCTATCATTGATGCTGAAGAATCAACTCCAACCATACTCCTT TAATTCAAAAAGGAAAACCCCTTCAAAGTGATCATATCGACTATAAGGAA CATCATCTATTGGGAAGACCACAGAGACAAATTTAAAGAGGCTGCAAGTG AAACAACAGAAAAAGTTCAAGACTTCATCAAGCGTGTTTGGGATCCTATC CTTACACCAAAACAGATGTACTTGAAATAACGTATCTCGTCTCGGTTCTT TTCACAGAAAGGCTCTTCAAGGACGACCGGGCAATCTGCAAGGAAGGTTG TAAACAAAAGATAATAACACAGGATTTCAGAGATTGCAGCACACTGAAGT ATGTAATACAAGAAATACGCCTGGTTGTGGAGTCCAAATTGGGTGGGAAG GAATCAAATCACGAACTTTTGTATGGTTTTGGGGGAGCCAGCGATCTCCA GTGAGTGGGATTGAAAGTTTTAATCAAATTGCAGTGTGTTTTTTGTGATA TGCCTATTTAATTTGTAGTCTTTATTTTCAGGATAGAATCAGAGTACAAA AAATGCTCCCTAATAAAGGTGTGTTAGAATTTATACATTGTGTTTTTGTT TTTTTACCAAGAATATAAACTTTGTGCAAGTA
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