EMLSAG00000001402, EMLSAG00000001402-684168 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832730|gb|GAXK01124814.1| (TSA: Calanus finmarchicus comp25430_c1_seq2 transcribed RNA sequence) HSP 1 Score: 61.6178 bits (148), Expect = 6.442e-10 Identity = 42/139 (30.22%), Postives = 78/139 (56.12%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELN-------HCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSW 269 +LE E+DSL +VLDM+ +E +L+ ANN L ++ + LE L Q+ +EM ++ K D R++L +++ ++L C+ ELE+++ EN +L +NE + + + SG++ DVV+K +++ Sbjct: 674 SLEQEMDSLRMVLDMKKEETEQLKAANNSLTLEMERFSGLEVKLQVQMQKTEEMNAVINMKNDQLRQVLDEYDNVQHQLEVEVSAHLACQQELEKSQWAKEN--FLV--ENEKMWKEVTNQKRSGLILDVVQKEKGLAY 1078
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832727|gb|GAXK01124817.1| (TSA: Calanus finmarchicus comp25430_c1_seq5 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 7.369e-10 Identity = 42/139 (30.22%), Postives = 78/139 (56.12%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELN-------HCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSW 269 +LE E+DSL +VLDM+ +E +L+ ANN L ++ + LE L Q+ +EM ++ K D R++L +++ ++L C+ ELE+++ EN +L +NE + + + SG++ DVV+K +++ Sbjct: 647 SLEQEMDSLRMVLDMKKEETEQLKAANNSLTLEMERFSGLEVKLQVQMQKTEEMNAVINMKNDQLRQVLDEYDNVQHQLEVEVSAHLACQQELEKSQWAKEN--FLV--ENEKMWKEVTNQKRSGLILDVVQKEKGLAY 1051
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832722|gb|GAXK01124822.1| (TSA: Calanus finmarchicus comp25430_c1_seq10 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 9.421e-10 Identity = 42/139 (30.22%), Postives = 78/139 (56.12%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELN-------HCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSW 269 +L+ EIDSL +VL+M+ DE +L+ ANN L ++ + LE L Q+ +EM ++ K D R++L +++ ++L C+ ELE+++ EN +L +NE + + + SG++ DVV+K +++ Sbjct: 179 SLDQEIDSLRMVLNMKKDETEQLKAANNSLMLEMERFGGLEVKLQVQMQKTEEMNAVINMKNDQLRQVLDEYDNVQHQLEVEVSAHLACQQELEKSQWAKEN--FLV--ENEKMWKEVTNQKRSGLILDVVQKEKGLAY 583
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832728|gb|GAXK01124816.1| (TSA: Calanus finmarchicus comp25430_c1_seq4 transcribed RNA sequence) HSP 1 Score: 60.8474 bits (146), Expect = 1.141e-9 Identity = 42/139 (30.22%), Postives = 78/139 (56.12%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELN-------HCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSW 269 +LE E+DSL +VLDM+ +E +L+ ANN L ++ + LE L Q+ +EM ++ K D R++L +++ ++L C+ ELE+++ EN +L +NE + + + SG++ DVV+K +++ Sbjct: 650 SLEQEMDSLRMVLDMKKEETEQLKAANNSLTLEMERFSGLEVKLQVQMQKTEEMNAVINMKNDQLRQVLDEYDNVQHQLEVEVSAHLACQQELEKSQWAKEN--FLV--ENEKMWKEVTNQKRSGLILDVVQKEKGLAY 1054
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832725|gb|GAXK01124819.1| (TSA: Calanus finmarchicus comp25430_c1_seq7 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 1.371e-5 Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELL----HMIESLNNELN---HCKTEL 223 +LE E+DSL VLDM+ DE +L+ ANN L ++ + L+ L Q+ +EM V++ K D +++L +M E L E++ C+ EL Sbjct: 647 SLEQEVDSLRKVLDMKKDETEQLKAANNSLMLEMERFAGLDLKLQVEMQKTEEMNVVINMKNDQLKQVLDEYDNMQEQLEVEVSAHLACQQEL 925
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832723|gb|GAXK01124821.1| (TSA: Calanus finmarchicus comp25430_c1_seq9 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 1.515e-5 Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNEL 216 +LE E+DSL VLDM+ DE +L+ ANN L ++ + L+ L Q+ +EM V++ K D +++L +++ +L Sbjct: 647 SLEQEVDSLRKVLDMKKDETEQLKAANNSLMLEMERFAGLDLKLQVEMQKTEEMNVVINMKNDQLKQVLDEYDNMQEQL 883
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832724|gb|GAXK01124820.1| (TSA: Calanus finmarchicus comp25430_c1_seq8 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 1.718e-5 Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNEL 216 +L E+DSL +VLDM+ +E +L+ ANN L ++ + LE L Q+ +EM ++ K D R++L +S+ ++L Sbjct: 650 SLGQEMDSLRMVLDMKKEETEQLKAANNSLTLEMERFSGLEVKLQVQMQKTEEMNAVINMKNDQLRQVLDEYDSVQHQL 886
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832726|gb|GAXK01124818.1| (TSA: Calanus finmarchicus comp25430_c1_seq6 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 2.668e-5 Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 138 TLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELL----HMIESLNNELN---HCKTEL 223 +LE E+DSL VLDM+ DE +L+ ANN L ++ + L+ L Q+ +EM V++ K D +++L +M E L E++ C+ EL Sbjct: 650 SLEQEVDSLRKVLDMKKDETEQLKAANNSLMLEMERFAGLDLKLQVEMQKTEEMNVVINMKNDQLKQVLDEYDNMQEQLEVEVSAHLACQQEL 928
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592832729|gb|GAXK01124815.1| (TSA: Calanus finmarchicus comp25430_c1_seq3 transcribed RNA sequence) HSP 1 Score: 47.3654 bits (111), Expect = 2.778e-5 Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 0 Query: 133 SLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELNH-------CKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEK 263 S + + E+DSL +L+M+ E+ +LR N L L+ + LE L QRI+EME ++ K + ++L + L +L C+ ELE+ ++ +N ++NE R S ++ G++ DVV K Sbjct: 662 SPDVSPAQEEMDSLRQLLNMKKGEVEQLRAEKNSLMLELERFGGLELRLKVDKQRIEEMEAVISLKNEQLVQVLDKYDILQEQLEMEVSAHLTCEEELERCLVEKDN----CVEENEKRWREVASQKEKGLIVDVVNK 1063
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Match: gi|592755189|gb|GAXK01199224.1| (TSA: Calanus finmarchicus comp120064_c0_seq14 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 6.085e-5 Identity = 30/102 (29.41%), Postives = 56/102 (54.90%), Query Frame = 0 Query: 135 RIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELNHC--KTELEQTKLKFENRQ 234 ++ L+ EIDSL V+DMRT E+H LR +L +L+ + + + + K ++++++ + K D E++++ N L+H K E+ +L EN Q Sbjct: 258 KMTNLQQEIDSLKTVVDMRTSEVHELRAEKVKLEEKLEQFDQQQISIRKFTAQVEDLKEQLTAKCDIEQKIMEE----NRHLHHLVQKENFEKKRLSMENEQ 551
BLAST of EMLSAG00000001402 vs. L. salmonis peptides
Match: EMLSAP00000001402 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1237:32751:83993:1 gene:EMLSAG00000001402 transcript:EMLSAT00000001402 description:"maker-LSalAtl2s1237-augustus-gene-0.6") HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0 Query: 1 MATSFGYVLLCMRKELTKKRKGKRDKQQQHVVNNNKEAAGVETGTQTSAFKKECEECPKKENQLISLKVRLESLETENRRIIKDHRDNESVILTKYKKSNERLGEESQRLRNEAKNIKCSLSTELQLRDKAHSLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELNHCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSWMVQIPAAVNGK 280 MATSFGYVLLCMRKELTKKRKGKRDKQQQHVVNNNKEAAGVETGTQTSAFKKECEECPKKENQLISLKVRLESLETENRRIIKDHRDNESVILTKYKKSNERLGEESQRLRNEAKNIKCSLSTELQLRDKAHSLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELNHCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSWMVQIPAAVNGK Sbjct: 1 MATSFGYVLLCMRKELTKKRKGKRDKQQQHVVNNNKEAAGVETGTQTSAFKKECEECPKKENQLISLKVRLESLETENRRIIKDHRDNESVILTKYKKSNERLGEESQRLRNEAKNIKCSLSTELQLRDKAHSLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSERELLHMIESLNNELNHCKTELEQTKLKFENRQYLRTQKNEDYKRHEESNRDSGIVYDVVEKMDSVSWMVQIPAAVNGK 280
BLAST of EMLSAG00000001402 vs. L. salmonis peptides
Match: EMLSAP00000000829 (pep:novel supercontig:LSalAtl2s:LSalAtl2s113:291280:431117:1 gene:EMLSAG00000000829 transcript:EMLSAT00000000829 description:"maker-LSalAtl2s113-snap-gene-4.12") HSP 1 Score: 50.447 bits (119), Expect = 2.730e-7 Identity = 39/141 (27.66%), Postives = 78/141 (55.32%), Query Frame = 0 Query: 68 KVRLESLETENRRIIKDHRDNESVILTKYKKSNER-------LGEESQRLRNEAKNIKCSLSTE---LQLRDKAHSLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGK 198 KV +ESL+++ + I+ + + ++ YK+ ++ + E QRL++EA LS E + +K + + L+ EI+SL +V+DMRT EIH+LR+ R +L+ + + S L+K ++++++ ++ K Sbjct: 334 KVEVESLKSDYEKKIQAQKLDYENSISSYKERDDAWQLEKQDVFSEIQRLKDEANRFIAILSQEEDRYEDEEKMSPQKKQILQREIESLQLVIDMRTSEIHKLREEQTRHLQQLEEFEKTRSLLSKMQAKVEDLQAQLENK 474
BLAST of EMLSAG00000001402 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold37_size504123-snap-gene-4.14 (protein:Tk07377 transcript:maker-scaffold37_size504123-snap-gene-4.14-mRNA-1 annotation:"centrosome-associated protein") HSP 1 Score: 65.855 bits (159), Expect = 3.828e-13 Identity = 53/194 (27.32%), Postives = 88/194 (45.36%), Query Frame = 0 Query: 54 CEECPKKENQLISLKVRLESLETENRRIIKDHRDNESVIL------TKYKKSNERLGEESQRLRNEAKNIKCSLSTELQLRDKAHSLRIKT---------------------------------------LENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSE 202 CE C K++ + +L+ +L +LE E +I +S +L TK + NE L E + + E K +K + L+ RD+ H +I+ LE EI SL V+D+R E+H +R N L+ +L+ + LE +L+K QR++EM ++VQ K+ +E Sbjct: 8 CEACKNKDDLVQTLEEQLTALEEEQVQIRTQFAGTQSSLLEIVEHETKLRSENESLALEGAQTKYELKELKKEMHQALETRDQEHEQQIQVMTEKDQDWKQRQEALHYNLQNALRTNVDLSKFENMSRSQLEQEIASLRTVIDLRAKEVHDIRRINADLHQKLERHYWLEKELDKTRQRVEEMNIVVQNKMVAE 201
BLAST of EMLSAG00000001402 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold441_size170131-snap-gene-0.31 (protein:Tk02636 transcript:maker-scaffold441_size170131-snap-gene-0.31-mRNA-1 annotation:"microtubule-associated tumor suppressor candidate 2 homolog isoform x2") HSP 1 Score: 51.9878 bits (123), Expect = 1.010e-7 Identity = 35/129 (27.13%), Postives = 71/129 (55.04%), Query Frame = 0 Query: 77 ENRRIIKDHRDNESVILTKYKKSNERLGEESQRLRNEAKNIKCSLSTELQLRDKAHSLRIKTLENEIDSLHIVLDMRTDEIHRLRDANNRLNTRLDNYCRLESDLNKAGQRIQEMEVIVQGKLDSEREL 205 E+++++K+ + E +K+ + + E QRL++EA LS E + D R +TL E++SL +V++MRT E+HRLR+ + +L+ + L + ++++++ + K +ER+L Sbjct: 377 EHQQLVKEFKSQEDT----WKQEKQEVFSEIQRLKDEANRFIAILSAEDESDDHLSLERKQTLTREVESLQLVVEMRTQEVHRLREEQAKQQAKLEELDFTKDSLARMRAKVEDLQAQLVNKSANERQL 501 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001402 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001402 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000001402 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001402 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001402 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001402 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001402 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1237:32751..83993+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001402-684168 ID=EMLSAG00000001402-684168|Name=EMLSAG00000001402|organism=Lepeophtheirus salmonis|type=gene|length=51243bp|location=Sequence derived from alignment at LSalAtl2s1237:32751..83993+ (Lepeophtheirus salmonis)back to top Add to Basket
|