EMLSAG00000002795, EMLSAG00000002795-685561 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002795
Unique NameEMLSAG00000002795-685561
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002795 vs. C. finmarchicus
Match: gi|592895362|gb|GAXK01063013.1| (TSA: Calanus finmarchicus comp543544_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.408e+0
Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 0 
Query:  141 MYGTCVKGQQGLKYFRLPNRLVKHKGSGSSTQSYSINV 178
            ++GT  +GQ+ L+Y+ +P     HK SGS    +SI +
Sbjct:  257 LFGTYRQGQKVLQYYPIPWIFQIHKESGSFPLQHSIQI 370
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BLAST of EMLSAG00000002795 vs. C. finmarchicus
Match: gi|592764979|gb|GAXK01189589.1| (TSA: Calanus finmarchicus comp2860145_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 6.700e+0
Identity = 19/54 (35.19%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:   19 VFLISSQEVIST----NKCCPENHVLNSDLSDCVPYSSN----TSSMEFHGLRL 64
            V ++  +EV +T    +KCCPEN V N   + C P   N    T   +FH   L
Sbjct:  329 VAMVCLKEVCTTEFCVSKCCPENEVFNQIDNQCAPMIKNGYLWTYDGKFHDQNL 490
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BLAST of EMLSAG00000002795 vs. L. salmonis peptides
Match: EMLSAP00000002795 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1614:56313:63192:1 gene:EMLSAG00000002795 transcript:EMLSAT00000002795 description:"maker-LSalAtl2s1614-snap-gene-0.5")

HSP 1 Score: 368.622 bits (945), Expect = 3.295e-131
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 
Query:    1 MKNNHASSLLWWVELLISVFLISSQEVISTNKCCPENHVLNSDLSDCVPYSSNTSSMEFHGLRLQYKGSFSPSLLPLLSRCPIKKRFEYAILNYNRHKDVIVLKEPDGFEGPFLYSCSNVGVEYQGSIQKCCSIGYVVDTMYGTCVKGQQGLKYFRLPNRLVKHKGSGSSTQSYSINVL 179
            MKNNHASSLLWWVELLISVFLISSQEVISTNKCCPENHVLNSDLSDCVPYSSNTSSMEFHGLRLQYKGSFSPSLLPLLSRCPIKKRFEYAILNYNRHKDVIVLKEPDGFEGPFLYSCSNVGVEYQGSIQKCCSIGYVVDTMYGTCVKGQQGLKYFRLPNRLVKHKGSGSSTQSYSINVL
Sbjct:    1 MKNNHASSLLWWVELLISVFLISSQEVISTNKCCPENHVLNSDLSDCVPYSSNTSSMEFHGLRLQYKGSFSPSLLPLLSRCPIKKRFEYAILNYNRHKDVIVLKEPDGFEGPFLYSCSNVGVEYQGSIQKCCSIGYVVDTMYGTCVKGQQGLKYFRLPNRLVKHKGSGSSTQSYSINVL 179
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002795 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002795 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592895362|gb|GAXK01063013.1|6.408e+036.84TSA: Calanus finmarchicus comp543544_c1_seq1 trans... [more]
gi|592764979|gb|GAXK01189589.1|6.700e+035.19TSA: Calanus finmarchicus comp2860145_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002795 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000027953.295e-131100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1614:5631... [more]
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BLAST of EMLSAG00000002795 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002795 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002795 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002795 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1614supercontigLSalAtl2s1614:56313..63192 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1614-snap-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002795 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002795EMLSAT00000002795-698642Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1614:56313..63192+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002795-685561 ID=EMLSAG00000002795-685561|Name=EMLSAG00000002795|organism=Lepeophtheirus salmonis|type=gene|length=6880bp|location=Sequence derived from alignment at LSalAtl2s1614:56313..63192+ (Lepeophtheirus salmonis)
ATGAAGAATAATCATGCATCATCCCTACTTTGGTGGGTTGAGCTCCTTAT
CTCTGTTTTCCTCATCTCATCACAAGAAGTCATCTCCACAAACAAGTGTT
GCCCAGAGAACCATGTACTCAACTCTGATCTAAGCGACTGTGTTCCTTAC
AGCTCAAATACATCTTCCATGGAGTTTCATGGACTTCGTCTTCAATATAA
AGGGTCCTTTAGTCCAAGTCTCTTGCCTCTTTTGAGTCGTTGTCCCATAA
AAAAACGCTTTGAGTATGCCATTCTTAACTATAATCGCCATAAAGACGTC
ATCGTTCTCAAGGAACCGGATGGATTTGAAGGTTTTAAAAAAACAAGAGA
TGGATGGCAGCGAGGGAAGTGTGTGTGTGGATGTGGTCTTGGGTTATATG
AACGAATTGGAAGGTAAGATACAACAATCAATATGTTCTTATTCATTACA
ATTACTATAAAACTATATATATATATAATCTTGTATTAGTAGTGTTGAGT
CAGTCCTTATTTATACGGTCCAGTCCAGTGTTAGGACCGGTCCTTAAGAC
CTTCCAGACTGTCAGTACTAAAACTAATTAAAAAAGAAGAAATAAAGTAG
AGTGATGTCATCAAGGACCAAATTTTATCAGTTTTAGTACGGAACTGGAC
GGGACTTTTACACTGGAAAGTTCAGCTCCCTCTTTTCAACCTGAGGCAAG
CTCATCCAAAGACAACTTCATTCCGAGGAAAAAACATATTTTTGTATACA
ATAACTTTTAACTATTAGAGAAGGTAAAATGAGTGCGTTGTATAATGTGT
ATGTACAAGTTCAAATATATTGAAAAAATATAAAATATAAGTCTAAATAA
TTTTAGAGAATCGTCACAAGGAGTGATAATTAAATTAGTAAATATCTACC
TATATTCATTTAGGGAGATAAAAATATCTTATAACAATGTAGCAAATGTA
TTGCAATCTGGTGTTAAAGATTTAATAAAGTGTTGCGTTGAGCATAATTT
CTTATTCAAATTAGGAACTTCTTTAATAGGATAATGAGTATATTATTGAA
TGATTAAATCTTTGTATTAAAAAGTAGCATAAAATACTCTATCACAGTTG
ATTTGTTTCACTTAGTTATTTTCCAAATAAATGTATTATTGGAGATGAAT
TTTCCTTTGGATAAACTTGTTTTGGGATGAGCTTTCATGCTTCAGGAAGA
CCTTATCTTGGGGTCAAAAGAAAGAGGTGAACTTTCCGTTGGTGCAAGGA
TTTTCTGTAAACGACAGTTAATGTTGTGTTAGTTCTTATTTATTCGGCAA
AGTCCTGTTTAGTATCTGGACGGATTTTATCAGTCCTTGAGATCGGTCTT
TCATTATGTCAGTCCAGTCTTAGGTCAAGATCTATCAGGTATTCAGACCG
TCAGTACTTTGACTGATTAAAAAAAAAAATTGATTGAGGTCATCAAGGAC
AGAAGTTTTTAGAACCTATAAGTAAGACTGAACTCGACTGGACTGATACT
GAGATGGAAGGGGCTGCAGTCTTCCATCCTAAATAAGGACTGACAGAGCT
CTAATGACAGTTGCAACAAGAACTGCAATTTTTTTTCGTTTCTTCTGAAT
TATTTTATATCTTTGCTAGGGCACAGTCCTGATGATGCTTTGAAGATTGA
ATTTAATATAAATCTTAATATACTATAATTCAATAAAATTTAATAAATCA
ATAAAAAAAGATTATTTAATGCATTCTTTTTTTAATTTTAACTCAAATTC
GATATTTTTAACTGTTGCAACTGTCCATAACTACGGGAAANTTATTTAAT
GCATTCTTTTTTTAATTTTTAACTCAAATTCGATATTTTTAACTGTTGCA
ACTGTCCATAACTACGGGAAAGGTTGTAATATCTAACGAGTCACAGTTAA
GTGTAACTTTAGCACAAATTTTTAACTGATATAACCATTAAATATATACA
AATAACAGCAGCATATTTAAGTATGTTTTGTCAAAGTTTGTCGAGTCTAA
ATCAACCCAACTCAGAGTAATTGAGCCAAATAAAAGTGTTACAACTGTCC
CTAGTTTTAAACTAACTAAACTTATAAAATATGCTCTACATTCACAAAAA
AAAAAAGTGACACCATATTGAAGATAAATTAGTAGAATTTCAACTATAAC
ATATAGGAATAGGTATAACATACCATAAAAAAATTATTCTTTTGATAAAT
AAAAACTATTGAGCCTTTTACTTTGTAGAAAAATTTGCCAAATTATATTT
TTTTCCCTTTTATCTTTGATAAGATAAATCCAATTCATTATAGTATTTAT
GTATATTCCTATCGGACAATTAGAGCAGGAGTTATTAAGAGAAATAGTTT
TCAAAAAAACGAAATGCCGCTATTCATGTTTATAAACTGATATGCTTAAT
CAAACTAATGACATCATTTATATATCTTCTTTATCTAAAAATACAGACTG
TTTGTAAGCAGTGGATGATGTGCTTATAAAAAACATTCGATGCTAATCAA
TTGAGTAACTTATTATTGAGAATGAATCAATAATAGTTATTGATGGAATA
ACATTCCTAGCTGAGCTATTTCGATATTAATTAATATTCTAGTCAATGAG
GAAAACAAACAAAAAAACCATCATGCAATCTGCTTTGATTAGTGCTGTCA
CGATACCATTATTTTCGTACGGATCATGGTACCAAAACTTATACCTGTAT
TTCGATACTTTTACATACTTCTTTGGTAAAAATCGAAAAAAAATGTTGTT
AAGGCCGTTCAAATGTATTTACAAAAGTGTACTTTTGTTAAACCCTAAAG
TCCATTTGACCCATTTTTTCATTTCTTTGAGCCTATTGGTCCCAGCCAAC
TATAGTTTTCTATATATATTTAATTAAACAAAGGGTTTTTTTTATTTCCT
CAGTATAATATTATATTTGAGTAGTATAAGTTCCCATATTTACAAGGAAT
AAAGATCAACTAATTCAAAAATTTGTCCAAATACGCTACAAAAGGTAACT
AATGTTGCTTCTCCAACAAGTATTTAGCTACTAATAGCGAAAAAAGGAGT
ATTTTATTGTTGCATTATTTCTTTGCTCTTTCGGATTTGAATCGATTAAT
CCATAAATAGGGTGAGCGAGCCATCTATGACTTTTTTAGATAGCTTGTTC
AACCTTGCACCAGTTTGAAAAATATGAAATCAATGGATGAAGCCGTTGTC
CCAAAAGGAACCGAGCTCTCCTTGGAATCCGTGCAGGGAGCGACAACCCG
ACACACTCAGTTAGATTTTACAAGGATGTGCCCACGTCATGGTGTTTGGG
GAGTGGGGGGTTAGCTCCAAAGGCCAAGCCTGCCTCCTCATGTGTTCTTC
CAAGTTATCAAGTTTAACACTGATGTCTACTTGGGCGTGCTAAAGACCAA
GATGAAACTTTGGATTGGCATATTTACAAATGGGAGGCCTTACATATGGA
AGCAGGGCTCCACTCCCTGTCATACCTAATAAAAAGTAACAAATGGCTCC
AAGACAATTTTGACGACTTTATCTTGACGGACTTTTGAGCTCCAATCTCC
CCAGATCTAAATTGGATTATTTTTTGTGATGCGCAACCAACAAACCAAGG
CCCGTCCAATAAAAAATACGAASTTATCAGTCGGTTTCCAGGATTTGCCA
AGGTACCAAGTGGCGAAGGCCTTCCTGCACTTTCAGCCTCGTATAGAGAC
TGTAATTGAGGCTGGAGGTAATTTATTAAATAAAATAAAACAGAATCTAT
CAAGCTCTATGGAGTTTCCGAGAAAGGCATAAAAATATATCGAAGAATAG
ATCCTGGCGCTGTTTTACGTTCAGAAAATTGTCTGAATTTGATGGGTTAT
AAAAGACAGTTTTGATTCTTGTTTTTTTGTTATGTCATCGATAAGGTGAT
ATTTTTATGACTTAATAGTTTTGAAAGTACTGGTTGGGAACACAATTTAG
TATAGAAGCGTTTTAAAATCGTCTGCTATACTAATATAACAGACAACACT
AGTTCTGATCAAAAAAACATGCATTGAAGAGGAATTCTTGTTACTATACT
GATATGAATTTTGCACAATTTTAATAAAACTGAGAATGAATTTGTTGTCA
TGTAATAGCTACATCATATGGTTTAATTCATCAACATTTATTTTTCGAAG
AATTTACTGTTGTTATGATGCACAACAGTGTCACCTCGCTAACATAAAAA
TTACACGGTATTTTGTCATCAGATGTGAATTTTTTGACTCCCCCACCCTT
ATCCGTGTTCTAAACATTGATTTATGGAATCAAAATTAGCTTTTGTGAAG
ATATAAGGAAGAATCCCCAACAATTTTTAATGGTAGTTCCATAGTTGAGA
TTAATTGGTCAACTGATACCAGCTAATTTTGAGTTTCTTTTCTATATCGT
TTCAAAGATAAAATTGCAAAATACAATAAAGATAACAATATGACTATAAA
AATTTCCTTCCRTTTTATAAAAAATAATCTTCTATTTGGGAAAAATTGGT
TACGTTGAGTCTCTTTCTTTTCTATTTGGGTAAAAGAGATATATTTTATA
ACTTGATAATTACAAAACTATTTTCCTGTGGATCACTTTGAGAACCTCGG
TTTTAATACATTCAACTCACAAATTTGAGATCAGTTGTAAAAGAAAGTTG
TGTTTAAATTTGAAGGAATCATTCAATGGAATATGGAATAAACAACTCTG
CGTTGTTGCATTGAAAATGTCCCTTCAAAATACATGCACATATTATATGA
CTGTGCATGTATTATTCAATAGACATATGATTGAAATAGTGTAAATATAT
GTGGAGTGCGCAAATCAATCAAAATATTGATTCCTCATTCTTCAATATCA
AAGATTGAAAAATGAGCGTTATATAATTTACACATAATGCAAATATTCCT
GTGCCACTGAATTTTTTGAATGTTCAATCTATGTTTAGGTATGTTAGTCA
CAAAGAGGGCGGGTGCTTTCAAAATTATTCTCATTGATTTCTATTATTTT
TTTGAGTCAACTTTAATGGAAATATATTGACTATTGGATTCATTTTATTT
AAAGAAAAGTGTATATTTGACTTTATTCTATTTCAATGATTTTGTAATTT
AATCTTTTTTACCATTAATTGAAGTTATATAATATGAACTATGATATATT
ATTAAAGGAGTTATATGATTCTAAAAATACATTATAAAAACCATCATTGA
TTGTTAAAGTAATAAATATTAAAACTTTATCGTTAATTCAACTGTTTTCT
ATCAAATAACGTTAATATTAATCATATTTATTAACTTAGAACACAACGAC
GCCATCTACATTGAATATTCATAGAGAGGAGAAAAAATCGCTTTTCGAAA
AGTGACGATTTATCTTTTTGTATCTGAAGGAACTGTTTTTTTTTTTTTGT
GTGATATCGTTTAAACTCTACAAAAAAAAATATTTTTTTACTAGTCATTT
AGTGTTGTATGATTCTATATTTACTTGGTCCAGTCAAGTCTTAGTATCTG
TCCTATCAGCCCTTGAGACCGGCCCTCCACACAGTCAGTACTTAAACTAA
AATAAATAATAGATAAAGTTAAGTGACTTTCTCAAGGACCAAACTTTATC
AGTTTTAAACTGATAGGTGTCTATGTTTCTTTTGATTTGCCCATAATTAG
TGTTCTGAGTTTTGATTGGTTGAATTAGAAATAGCTCTTGTTAAGCTGTA
GGCCTCCTATGGTACGGAGTTGTACTGCAGTTMGGTACGTTGTTACTCTC
GGTGCGGTACGTATATATAATCATATATTAAATATTTTGATATTATAAAA
TTTTGGATATTTGAATCATCAACCCCTGATGAGGATCGTCCCCTATTAAA
AAATGGCCGAAATATTCGGTGATACTTACGAATCTGCGTAAAAAGAAATA
AAAAATTATACCAAAAAAAAATGGAAAATGAGATAATGACTTAGAAAATA
ATAAAATGCAGTGAGCAAGACGTAGTATTACTTATAGTGATTAATGTAAG
CAAATAGGTTGTCTCTGGAAGATACCCATGTTTTTATGTCATTCTTTCTG
ATTTGGTTTTTACTCTCACCTCAATAAAGACAATATTCCAAATCGCACCC
TTTATACTTGAAGATAAGCTATCTAATTATAAAGATTATTATGTATAATT
ATAATTCGAGTGCATGAGATGCTAAATGATGGAAAGTAATATATTTCGTC
TACAAACTATAGGCTCTGTATTTAAATTGCTGGACGTTTTAAGATACGGA
AGAATCTTAATTTTAGTTTAAATACTATATTTGAAAGGGAAGTTTCCACG
AGTTTAATAAGAATAATTTTTTGATAGAACTAGACTATAATTATTTGTTG
AAGTATACAAATGTTATACAGAGACAAGATATTTTAGCCTGCTTATGTGT
TGACGCCTCAATTTTGTATCTATTTTGGATCGTAATAGCTGTCTACAAAT
TATTTGTATATGATTTTTAATTTTACTAAAACGAACATGTACTTTTATAT
TTTGTGAGTACATACATTAAAAAAGTCACACGAAATAAAAGTACTCAAGG
GGCTTTGAAATAAATAAAAAAGGACAATTAAAAAATAAACTTTAAGCAAA
CTAAGTACTGAGCGATTTTTTATTTTTTTTGGTTACCAATTAATTTAATG
ATTCRTCTCATATTATATTTACAGGGCCCTTTCTGTATTCGTGTTCAAAT
GTTGGAGTTGAATATCAAGGAAGTATTCAAAAATGCTGCTCAATAGGCTA
CGTTGTCGATACAATGTACGGAACGTGTGTCAAAGGTCAACAAGGACTAA
AGTATTTCCGTCTTCCAAATCGCCTTGTGAAACATAAAGGATCCGGAAGC
TCCACTCAAAGTTACTCCATAAACGTACTT
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