EMLSAG00000009363, EMLSAG00000009363-692129 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009363
Unique NameEMLSAG00000009363-692129
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000009363 vs. C. finmarchicus
Match: gi|592916567|gb|GAXK01041808.1| (TSA: Calanus finmarchicus comp2068442_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.583e-1
Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 0
Query:   19 IKSSLTETPSEGKYSGFFLEMADILHSIFPSTSSLAINKFTSSSGLGQ 66
            +KSSLTE  ++G+ +    E+ D+  S F S ++   N FTS S +GQ
Sbjct: 5798 VKSSLTEEVTKGRRN---YEVNDLAASYFDSETTELDNVFTSLSTIGQ 5932          
BLAST of EMLSAG00000009363 vs. C. finmarchicus
Match: gi|592800449|gb|GAXK01154119.1| (TSA: Calanus finmarchicus comp1387490_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.901e+0
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 0
Query:   14 ISSTFIKSSLTETPSEGKYS 33
            +SS FIK+SL E P  GKYS
Sbjct:  200 VSSIFIKNSLKEGPDTGKYS 259          
BLAST of EMLSAG00000009363 vs. C. finmarchicus
Match: gi|592856737|gb|GAXK01100807.1| (TSA: Calanus finmarchicus comp7421_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.815e+0
Identity = 19/53 (35.85%), Postives = 24/53 (45.28%), Query Frame = 0
Query:   32 YSGFFLEMADIL---HSIFPSTSSLAINKFTSSSGLGQIMDIASPGRKSGRAP 81
            YSG   +M  +L   H   P+ S           GLG + D+ASP R  GR P
Sbjct: 3607 YSGISRQMMTLL*VSHLTLPARS-------VKRGGLGALPDLASPFRLCGRWP 3744          
BLAST of EMLSAG00000009363 vs. L. salmonis peptides
Match: EMLSAP00000009363 (pep:novel supercontig:LSalAtl2s:LSalAtl2s599:281572:282228:-1 gene:EMLSAG00000009363 transcript:EMLSAT00000009363 description:"snap_masked-LSalAtl2s599-processed-gene-3.14")

HSP 1 Score: 183.726 bits (465), Expect = 3.867e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MIKKIITFFGGFLISSTFIKSSLTETPSEGKYSGFFLEMADILHSIFPSTSSLAINKFTSSSGLGQIMDIASPGRKSGRAPRGELTELKYLIKS 94
            MIKKIITFFGGFLISSTFIKSSLTETPSEGKYSGFFLEMADILHSIFPSTSSLAINKFTSSSGLGQIMDIASPGRKSGRAPRGELTELKYLIKS
Sbjct:    1 MIKKIITFFGGFLISSTFIKSSLTETPSEGKYSGFFLEMADILHSIFPSTSSLAINKFTSSSGLGQIMDIASPGRKSGRAPRGELTELKYLIKS 94          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009363 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009363 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592916567|gb|GAXK01041808.1|3.583e-139.58TSA: Calanus finmarchicus comp2068442_c0_seq1 tran... [more]
gi|592800449|gb|GAXK01154119.1|3.901e+065.00TSA: Calanus finmarchicus comp1387490_c0_seq1 tran... [more]
gi|592856737|gb|GAXK01100807.1|4.815e+035.85TSA: Calanus finmarchicus comp7421_c0_seq2 transcr... [more]
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BLAST of EMLSAG00000009363 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000093633.867e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s599:28157... [more]
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BLAST of EMLSAG00000009363 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009363 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009363 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009363 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s599supercontigLSalAtl2s599:281572..282228 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s599-processed-gene-3.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009363 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009363EMLSAT00000009363-705210Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s599:281572..282228-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009363-692129 ID=EMLSAG00000009363-692129|Name=EMLSAG00000009363|organism=Lepeophtheirus salmonis|type=gene|length=657bp|location=Sequence derived from alignment at LSalAtl2s599:281572..282228- (Lepeophtheirus salmonis)
ATGATCAAAAAAATTATTACCTTCTTTGGTGGATTCCTTATATCAAGTAC CTTCATCAAAAGTTCCTTAACAGAAACGCCATCAGAGGGTAAATATTCCG GCTTCTTCTTAGAAATGGCAGATATTTTACACTCCATATTTCCATCAACA TCGAGTCTTGCCATCAACAAATTCACCTCTTCCTCAGGATTAGGACAAAT AATGGATATTGCATCTCCAGGAAGAAAATCGGGAAGAGCTCCCAGGGTTA TTTCCAGTGTTCTTTTAAGAGCTCCTTCGCGGTTCAAAGGTCTGAACTTT ATCAGGGGAACCTGAAGCAGAGAAGGATCCTTTCCTCTATCTAACTCTAA AGAGGAAGCATATTTATTTGATACTAATTGAACCTTTAAATTTGATTTCG GACAGGAGGGTATATTCAAGTCCAAATTAGATAAGGAAGATGAAGTTTTT TTAAGATCCGACTCTAATGTCAAATCGTTAAATCCTTTCAGTAAATCATC CATCGCTCTCACTGAAATAAAACATTTAAACGAATGTATTAATTGTGTTT TTCTTTGTTTGTTTTTTCAAACTAAGGACTGACTATATTTGTTTATTTCA AAGTTATCATATTTTTAGGGAGAGTTAACAGAACTGAAGTATTTAATCAA GTCATAA
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