EMLSAT00000004174, EMLSAT00000004174-700021 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000004174
Unique NameEMLSAT00000004174-700021
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
K F80 Thyro g12693 female
  1. PreAdult2
-Missing-
no visible phenotype
03.04.2013 - 14:49
13.05.2013 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s220supercontigLSalAtl2s220:369739..371271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000004174 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000004174EMLSAG00000004174-686940Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000018067EMLSAE00000018067-726995Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto776980auto776980Lepeophtheirus salmonispolypeptide
EMLSAP00000004174EMLSAP00000004174Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000004174

>EMLSAP00000004174 ID=EMLSAP00000004174|Name=EMLSAP00000004174|organism=Lepeophtheirus salmonis|type=polypeptide|length=510bp
MDLFSFSCFPPSSESSPMSIGLDIGELDSYLNNTFTSTPLELHHQNNLQH
HQPQHIFPPPFDFPEYQIRNYHYQLSSTEGPINGIDYGYNLVNNNEIEDF
TILNAVPLPESPIPSLIEVKEEPKKRKRRPEPMTDVCRICGDIAPPHNHY
GAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFC
RYRGCLSAGMXPSYVTTAEERLQKKKNSKRGKKLVIKLDIKEEIDYGDFP
TFRVIADINIPLTSSGSYPTMCFMIEQNRRVEHRIQCRNFTWHSIAVGVS
LMMELIRVGSKCLAPSNDIEIEVQFNENNKSIISGVTNIPNTDPVLRVNV
SSVFSARVGLKEQLLETIGSKDYIVQKTPYPNMAQDTILSMKQVFTNPWG
DGGLSRDCVNKFDNILEKMEKLNLDRKIECLLSVIPFFAGTDNPYETELL
SKVQEEINMVLFQHVYESAGPRDGKTLFSKIMSIIVDLQEIVTLCRKKAL
DFKIASCGIS
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mRNA from alignment at LSalAtl2s220:369739..371271-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000004174-700021 ID=EMLSAT00000004174-700021|Name=EMLSAT00000004174|organism=Lepeophtheirus salmonis|type=mRNA|length=1533bp|location=Sequence derived from alignment at LSalAtl2s220:369739..371271- (Lepeophtheirus salmonis)
ATGGATCTCTTCTCATTTTCTTGTTTTCCTCCTTCTTCGGAGAGCTCACC CATGAGTATTGGCCTTGACATTGGTGAATTAGATTCCTACCTCAATAACA CATTTACTTCAACACCTTTGGAGCTACATCATCAGAACAACCTACAGCAT CATCAACCTCAACACATCTTTCCACCACCTTTCGATTTCCCTGAGTATCA AATACGAAATTATCATTACCAATTAAGCAGTACCGAAGGCCCAATTAACG GTATTGACTATGGCTATAATCTTGTAAACAATAATGAAATTGAGGATTTC ACCATTCTAAATGCAGTCCCACTACCGGAAAGTCCTATTCCATCCTTAAT TGAGGTAAAAGAGGAACCCAAGAAAAGAAAACGACGGCCAGAGCCCATGA CGGATGTTTGCAGGATATGTGGGGATATTGCGCCCCCTCATAATCACTAC GGTGCAATTGCTTGTTTCTCATGTAGAGCTTTCTTCGGAAGAACAGTGCA TAAAGGAACCCAGGAAAGATTTCGCTGTGTAAGAGGTAATCCAGATGAAT CCGGACAGTGTATGATCACTAAAGCCACAAGAACACATTGTCAGTTTTGT CGTTATCGCGGATGTCTTTCTGCCGGAATGAAMCCCTCCTATGTCACAAC TGCCGAAGAGCGACTGCAAAAGAAGAAAAATTCGAAACGAGGTAAAAAAC TTGTGATTAAGCTTGATATTAAGGAAGAGATAGACTATGGAGACTTCCCC ACATTCCGTGTCATAGCAGACATAAATATTCCATTGACCTCATCAGGATC CTATCCAACTATGTGTTTTATGATAGAGCAAAACAGACGGGTTGAGCATA GAATACAATGTAGAAACTTTACATGGCATTCAATCGCTGTAGGAGTAAGT CTGATGATGGAACTCATTCGTGTAGGTTCAAAATGTCTTGCTCCTAGTAA CGATATTGAAATCGAGGTGCAATTTAACGAAAATAACAAATCCATTATCA GTGGTGTTACCAACATTCCAAACACTGACCCCGTATTACGAGTTAATGTA AGCTCTGTGTTTTCAGCACGTGTGGGACTCAAAGAGCAGTTGTTGGAAAC CATAGGATCAAAGGACTACATTGTGCAAAAGACACCATATCCTAATATGG CACAAGATACAATCCTTTCAATGAAACAAGTTTTTACTAATCCTTGGGGT GATGGAGGTCTGAGTCGAGACTGTGTTAATAAATTTGATAATATCCTAGA AAAAATGGAAAAATTGAATTTAGATCGTAAAATTGAGTGTCTTTTGTCAG TTATACCTTTTTTCGCGGGAACGGATAATCCTTACGAAACGGAACTTTTA TCGAAGGTTCAAGAAGAAATTAACATGGTACTATTTCAGCATGTCTATGA ATCCGCTGGACCTCGGGACGGGAAGACATTGTTTTCAAAAATTATGAGTA TAATTGTTGACTTACAAGAAATAGTGACTCTTTGCAGAAAAAAAGCACTA GACTTTAAAATTGCCTCATGTGGAATTAGTTAA
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