EMLSAT00000007801, EMLSAT00000007801-703648 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000007801
Unique NameEMLSAT00000007801-703648
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, shorter eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
A F3 (IRP2) LsIRP1B female
  1. PreAdult2
  2. Adult
-Missing-
female reproduction, shorter eggstrings
23.01.2012 - 09:00
24.02.2012 - 09:00
Characterisation of iron regulatory protein 1A... more
B F2+F3 (IRP1+IRP2) LsIRP1B, LsIRP1A female
  1. PreAdult2
  2. Adult
-Missing-
female reproduction, shorter eggstrings
19.03.2012 - 09:00
18.04.2012 - 09:00
Characterisation of iron regulatory protein 1A... more
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
NAE F3 LsIRP1B unknown
  1. Nauplius I
  2. Copepodid
no phenotype
no visible phenotype
12.06.2014 (All day)
20.06.2014 (All day)
Characterisation of iron regulatory protein 1A... more
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s457supercontigLSalAtl2s457:64181..67196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000007801 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000007801EMLSAG00000007801-690567Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000034506EMLSAE00000034506-743434Lepeophtheirus salmonisexon
EMLSAE00000034507EMLSAE00000034507-743435Lepeophtheirus salmonisexon
EMLSAE00000034508EMLSAE00000034508-743436Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771136auto771136Lepeophtheirus salmonispolypeptide
EMLSAP00000007801EMLSAP00000007801Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000007801

>EMLSAP00000007801 ID=EMLSAP00000007801|Name=EMLSAP00000007801|organism=Lepeophtheirus salmonis|type=polypeptide|length=915bp
MKEGPSSGTMEDEDLLKDFQVGERSYKYYDVTQIQGYEELPYSLRVLLEC
AVRKRSETQGQVWKDVYERILRRVLLQDFTGVPALIDLAAIRESVSKSGG
CPDVVDSLCPADLVVDHCVQVDYNQIKQQLSSPPDPSPKTPVLGDDICPF
HQKMSYWADALRSNQTSEFERNKERFIFLKWVNSAFKNITVIPPGTGVMH
QVNLEYLARVVTCQGGVLFPDSVVGTDTHTTMINGLGVLGWGVGTLDAQA
VMFGHPVTLSFPRVVGIRIKGVISDYSTSTDLVLMITKKLRQAGVQGAFV
EFFGPSLKELSVADRATISNMCPEYGALVGFFPIDEITIQYLAQSGRDKS
HIETVEKYMKTVKMFRSSDENENIRFASIIEIDLSDIIPCVSGPKRTKDK
VSINEIAADFKSALHLKEGPKGYGLSQGQGHVAFSVNIDGEYFTVGHGTV
LLAAISSCTNTSNPSVMLGAGLLAKKAVECGLSVPKVVKTSLAPGSGVVT
SYLQESGVMPYLYMLGFEIVGYGCSTCSYNSGPNLPDSIVQAIKQGNLVC
CGLLSGNRNFEGRLDPDIRANYLASPLMVIAYAIAGRIDINLDREPLGFN
SHTGEAIFLKNIWPSRQEIQEIERKLVIPGIYRQVYSKVSVGNKHWDSLS
VPNSVDKFPWSSDSTYIKCPEYIKEIGSNARNWKNMRCLLKLGDNITSDH
ISPAGSITRSSPAAEYLSSLGLAPREYNSYGARRGNYHVMVRGTFSNMRL
QNHLLNKVGPYTLHLPSEVTTTIFEASERYKNDGVSLFAIGGKNFGRGTS
RDWATRGPFLLGVRAILAVSFDPTYRSNLVKTGILPLQITSISYESLKGT
ECLSIDIRDNITPKCLIDVVVGKAERSFKAVVRVDNDYETDVFHAGGVIA
QIVSKTKDKTTCETA
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mRNA from alignment at LSalAtl2s457:64181..67196+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000007801-703648 ID=EMLSAT00000007801-703648|Name=EMLSAT00000007801|organism=Lepeophtheirus salmonis|type=mRNA|length=3016bp|location=Sequence derived from alignment at LSalAtl2s457:64181..67196+ (Lepeophtheirus salmonis)
ATGAAAGAAGGGCCCTCATCAGGGACTATGGAAGATGAAGACCTTCTCAA GGATTTCCAAGTTGGGGAAAGAAGCTACAAATATTACGACGTAACCCAAA TCCAGGGCTATGAGGAACTCCCTTACTCCTTGCGTGTTCTCCTGGAGTGT GCCGTTCGAAAGCGTTCGGAAACGCAAGGACAAGTCTGGAAGGATGTTTA TGAACGGATTTTGAGTGTGTTGAGCGGATGTGAAGAGGACTNCTGAGGAA GATGACGATATCCTATTTCATCCAGGGCGAGTTCTTCTTCAGGATTTCAC AGGAGTTCCAGCATTGATCGATTTAGCAGCGATCCGTGAATCTGTATCCA AGTCCGGTGGTTGTCCGGATGTGGTGGACAGTCTTTGTCCAGCAGATCTG GTTGTAGATCACTGTGTTCAAGTGGACTACAACCAAATCAAGCAGCAACT GTCAAGYCCGCCTGATCCTTCTCCCAAGACCCCGGTTCTCGGGGGTTCGA TGCAGCCTTGTCCCACCGTGATCGTTCACTCCACTTTCCCTCCCCCTTTC CTGGCCTATCCTCCACCTCCGCCCATTTATACGCTCCCTGCATTCTACCC CATTTCAAGCTATCAAYCCAAGGTAGTGGCCCCTTCYCCGGCATCCAATA CTTCAAATCGCTCTGTTCCTCCAATGGACAACCCTGGACTTCCAATTCAA GATGATATTTGCCCATTTCATCAAAAAATGTCTTATTGGGCCGATGCTCT GCGTTCAAATCAGACATCCGAATTTGAGCGCAATAAGGAACGTTTCATCT TTCTAAAATGGGTTAATTCTGCCTTCAAAAATATCACCGTGATTCCTCCT GGAACAGGAGTGATGCATCAAGTGAATTTAGAATATCTTGCCAGAGTGGT GACGTGTCAAGGAGGTGTTCTCTTTCCAGACTCTGTTGTGGGGACAGACA CTCATACTACAATGATTAATGGGCTAGGTGTACTTGGATGGGGTGTTGGG ACTCTTGATGCACAAGCTGTTATGTTTGGACATCCTGTTACTTTGAGTTT TCCTCGTGTAGTTGGTATCCGTATAAAAGGTGTTATATCTGACTACTCGA CATCCACTGACTTAGTGTTAATGATAACGAAGAAGCTACGTCAAGCAGGA GTACAAGGAGCGTTTGTTGAATTCTTTGGTCCCAGCCTGAAGGAATTGAG TGTTGCTGATCGAGCTACGATTTCTAATATGTGCCCTGAGTATGGAGCAT TGGTTGGCTTTTTTCCAATTGATGAAATTACAATTCAATATCTTGCACAA TCTGGGAGGGATAAATCTCATATAGAAACTGTGGAAAAGTACATGAAAAC TGTCAAAATGTTTCGCTCCTCGGATGAAAATGAAAACATCAGATTTGCTT CTATTATTGAAATTGATTTGTCTGATATTATTCCTTGTGTATCTGGTCCA AAAAGGACCAAAGACAAAGTATCAATCAATGAAATAGCAGCGGATTTTAA GTCTGCATTACACTTAAAAGAGGGACCTAAAGGATATGGGTTATCACAAG GACAAGGTCATGTTGCTTTTTCTGTGAACATTGATGGAGAATATTTCACA GTAGGCCATGGAACTGTTTTACTAGCAGCTATTTCATCATGTACAAATAC AAGCAATCCTTCTGTAATGCTTGGAGCCGGTCTTTTAGCTAAAAAGGCCG TAGAATGTGGTTTGAGCGTGCCAAAAGTAGTAAAGACAAGTTTAGCACCT GGAAGTGGGGTCGTAACGTCGTATTTACAAGAAAGTGGTGTAATGCCTTA TCTTTACATGTTGGGATTCGAAATCGTGGGCTATGGATGCTCTACATGTT CTTATAATAGTGGGCCAAATCTTCCTGATTCAATTGTTCAAGCTATCAAG CAAGGAAATTTGGTATGTTGTGGCCTCTTGTCAGGAAATAGAAATTTCGA AGGTCGATTAGATCCCGATATTAGAGCAAATTATTTGGCCTCTCCACTTA TGGTTATTGCTTATGCTATCGCCGGTCGTATCGATATAAATCTTGATAGA GAACCATTGGGTTTTAACTCTCACACAGGAGAAGCCATTTTCTTGAAGAA TATTTGGCCTTCTCGACAAGAAATTCAAGAGATAGAGAGAAAACTAGTTA TTCCTGGCATATATAGACAAGTTTATTCAAAAGTATCTGTTGGCAATAAA CACTGGGACTCTTTGTCTGTACCTAATTCTGTTGATAAGTTTCCTTGGTC AAGTGACTCAACTTACATAAAGTGTCCCGAATATATTAAGGAAATAGGTT CTAATGCACGTAATTGGAAAAATATGCGTTGTTTGTTAAAATTAGGAGAC AATATAACATCAGATCACATCAGCCCTGCTGGAAGTATTACTCGTAGTAG TCCTGCTGCAGAATATTTATCGTCTCTTGGACTTGCTCCGAGGGAATATA ATTCTTATGGTGCTCGAAGAGGTAATTACCATGTTATGGTTCGTGGAACA TTTTCTAATATGCGTCTACAGAATCATTTATTGAACAAAGTTGGACCTTA TACACTGCACTTGCCCTCTGAAGTAACAACCACCATTTTTGAGGCTTCAG AACGCTATAAAAACGATGGAGTGTCTCTATTTGCTATTGGTGGTAAGAAT TTTGGAAGAGGAACTTCGAGGGATTGGGCAACTAGAGGTCCATTTTTATT AGGAGTTCGTGCAATTTTAGCCGTCTCCTTTGATCCAACATATCGCTCGA ATCTCGTCAAAACTGGAATTCTTCCCCTGCAAATTACAAGTATATCATAT GAGTCTCTTAAAGGAACTGAATGCCTTAGCATTGATATAAGAGACAATAT TACACCTAAATGTCTCATCGATGTGGTTGTTGGAAAGGCAGAAAGATCCT TTAAAGCTGTTGTTCGAGTCGACAATGACTATGAAACAGATGTCTTTCAT GCAGGGGGTGTAATTGCACAAATTGTCAGCAAAACAAAGGACAAGACGAC ATGCGAGACAGCTTGA
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