unhealthy ribosome biogenesis protein 2-like protein, maker-scaffold156_size297567-snap-gene-0.25 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. L. salmonis genes
Match: EMLSAG00000000944 (supercontig:LSalAtl2s:LSalAtl2s1166:164075:170496:-1 gene:EMLSAG00000000944 transcript:EMLSAT00000000944 description:"maker-LSalAtl2s1166-augustus-gene-1.26") HSP 1 Score: 86.2705 bits (212), Expect = 3.631e-17 Identity = 68/227 (29.96%), Postives = 109/227 (48.02%), Query Frame = 0 Query: 184 VSICPGLTVLEWVQAFVREQVESAFPWTVTPAMVDLYTTLLRAHPQALEPHTGSLTSLFLFNHEHIDSDAFVVLALTSAGQTRQLPKLVSRALMAAKRH--VGF-LRFSPIRPAVHDKLALAIMGLPKAQVMELWKTLLYHFKTDLCPEEVPFVALADYFMGTFLANVTVLDHNVPTSVLRKIVPLIHETHTILEALAGPVRAQIPRTQQSLLSLAIFLQEYRHTQF 407 V I T L+WVQ V++ + + V++ + LL+ +P EP G+ + LFN E D A L + + R +PKL+++ L+ +H VG I A +KL GL Q +ELWKT YH D P + F+ D M FL+N ++D +VP +V K+ LI +T ++ L PR++ SL+ L++ L+ R ++ Sbjct: 590 VEIFGDTTFLKWVQYLVKDLILQLDNY------VEVISKLLKMNPVIXEPLVGTYSCSLLFN-ELKDFSAEFSLLVDIYSKLRLIPKLMAKILIYLAQHPEVGADFDKKAISSATWNKLGTEFQGLVFGQCLELWKTFNYHLD-DNKPNSIAFL---DIVMDLFLSNCRLVDFSVPENVFPKVFELIKKTSLYIDKL--------PRSKGSLIDLSLLLKNVRGVEY 797
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. nr
Match: gi|1325332195|ref|XP_023347950.1| (uncharacterized protein LOC111716708 [Eurytemora affinis]) HSP 1 Score: 66.2402 bits (160), Expect = 4.164e-7 Identity = 80/283 (28.27%), Postives = 126/283 (44.52%), Query Frame = 0 Query: 148 APFPRDLIPALSHLDFDEALRDVFRVLFLELGTPLTVSICPGLTVLEWVQAFVREQVESAFPWTVTPAMVDLYTTLLRAHPQALEPHTGSLTSLFLFNHEHIDSDAFVVL---ALTSAGQTRQLPKLVSRALMAAKRHVGFLRFSP-----IRPAVHDKLALAIMGLPKAQVMELWKTLLYHFKTDLCP-----EEVPFVALADYFMGTFLANVTVLDHNVPTSVLRKIVPLIHET-HTIL--EALAGPVRAQIPRTQ--QSLLSLAIFLQEYRHTQFPDLIN 412 +PF LIP LS ++ + + R+ L L SI LTV + V+ +E + + M L ++ HP L+P LTSL L + +DS A ++ L + + RQLPKL+SR + +LR S RP AI +P+ Q +E+WK+LLYH D + + +A + T L N + DHN+P + ++ LI T + +L E L +A + + SL+ L + YR +F DL + Sbjct: 276 SPF---LIPLLS--NYKPSSDRLVRIFNHALPLDLKYSINEELTVNNLISGCVKFSIEK---YKMKSNMSQLLFSVFTHHPLILDP----LTSLILTRY-MLDSSAPILTFQTVLDLSLKLRQLPKLISRLFL-------YLRTSSDLTLSWRPTDLKLFGEAISQVPRVQSVEIWKSLLYHLSADCIKVLDTDKGIQVWRIAIPLLSTVLQNAHLSDHNLPAPLAVRVKDLISSTLNDVLKAECLDPARKADVLYSDLASSLIELVELITTYRGFEFEDLFS 538 The following BLAST results are available for this feature:
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold156_size297567:75852..79437- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold156_size297567-snap-gene-0.25 ID=maker-scaffold156_size297567-snap-gene-0.25|Name=unhealthy ribosome biogenesis protein 2-like protein|organism=Tigriopus kingsejongensis|type=gene|length=3586bp|location=Sequence derived from alignment at scaffold156_size297567:75852..79437- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'unhealthy ribosome biogenesis protein 2-like protein' has the following synonyms
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