unhealthy ribosome biogenesis protein 2-like protein, maker-scaffold156_size297567-snap-gene-0.25 (gene) Tigriopus kingsejongensis

Overview
Nameunhealthy ribosome biogenesis protein 2-like protein
Unique Namemaker-scaffold156_size297567-snap-gene-0.25
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. L. salmonis genes
Match: EMLSAG00000000944 (supercontig:LSalAtl2s:LSalAtl2s1166:164075:170496:-1 gene:EMLSAG00000000944 transcript:EMLSAT00000000944 description:"maker-LSalAtl2s1166-augustus-gene-1.26")

HSP 1 Score: 86.2705 bits (212), Expect = 3.631e-17
Identity = 68/227 (29.96%), Postives = 109/227 (48.02%), Query Frame = 0
Query:  184 VSICPGLTVLEWVQAFVREQVESAFPWTVTPAMVDLYTTLLRAHPQALEPHTGSLTSLFLFNHEHIDSDAFVVLALTSAGQTRQLPKLVSRALMAAKRH--VGF-LRFSPIRPAVHDKLALAIMGLPKAQVMELWKTLLYHFKTDLCPEEVPFVALADYFMGTFLANVTVLDHNVPTSVLRKIVPLIHETHTILEALAGPVRAQIPRTQQSLLSLAIFLQEYRHTQF 407
            V I    T L+WVQ  V++ +     +      V++ + LL+ +P   EP  G+ +   LFN E  D  A   L +    + R +PKL+++ L+   +H  VG       I  A  +KL     GL   Q +ELWKT  YH   D  P  + F+   D  M  FL+N  ++D +VP +V  K+  LI +T   ++ L        PR++ SL+ L++ L+  R  ++
Sbjct:  590 VEIFGDTTFLKWVQYLVKDLILQLDNY------VEVISKLLKMNPVIXEPLVGTYSCSLLFN-ELKDFSAEFSLLVDIYSKLRLIPKLMAKILIYLAQHPEVGADFDKKAISSATWNKLGTEFQGLVFGQCLELWKTFNYHLD-DNKPNSIAFL---DIVMDLFLSNCRLVDFSVPENVFPKVFELIKKTSLYIDKL--------PRSKGSLIDLSLLLKNVRGVEY 797          
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. nr
Match: gi|1325332195|ref|XP_023347950.1| (uncharacterized protein LOC111716708 [Eurytemora affinis])

HSP 1 Score: 66.2402 bits (160), Expect = 4.164e-7
Identity = 80/283 (28.27%), Postives = 126/283 (44.52%), Query Frame = 0
Query:  148 APFPRDLIPALSHLDFDEALRDVFRVLFLELGTPLTVSICPGLTVLEWVQAFVREQVESAFPWTVTPAMVDLYTTLLRAHPQALEPHTGSLTSLFLFNHEHIDSDAFVVL---ALTSAGQTRQLPKLVSRALMAAKRHVGFLRFSP-----IRPAVHDKLALAIMGLPKAQVMELWKTLLYHFKTDLCP-----EEVPFVALADYFMGTFLANVTVLDHNVPTSVLRKIVPLIHET-HTIL--EALAGPVRAQIPRTQ--QSLLSLAIFLQEYRHTQFPDLIN 412
            +PF   LIP LS  ++  +   + R+    L   L  SI   LTV   +   V+  +E    + +   M  L  ++   HP  L+P    LTSL L  +  +DS A ++     L  + + RQLPKL+SR  +       +LR S       RP        AI  +P+ Q +E+WK+LLYH   D        + +    +A   + T L N  + DHN+P  +  ++  LI  T + +L  E L    +A +  +    SL+ L   +  YR  +F DL +
Sbjct:  276 SPF---LIPLLS--NYKPSSDRLVRIFNHALPLDLKYSINEELTVNNLISGCVKFSIEK---YKMKSNMSQLLFSVFTHHPLILDP----LTSLILTRY-MLDSSAPILTFQTVLDLSLKLRQLPKLISRLFL-------YLRTSSDLTLSWRPTDLKLFGEAISQVPRVQSVEIWKSLLYHLSADCIKVLDTDKGIQVWRIAIPLLSTVLQNAHLSDHNLPAPLAVRVKDLISSTLNDVLKAECLDPARKADVLYSDLASSLIELVELITTYRGFEFEDLFS 538          
The following BLAST results are available for this feature:
BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000009443.631e-1729.96supercontig:LSalAtl2s:LSalAtl2s1166:164075:170496:... [more]
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BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of unhealthy ribosome biogenesis protein 2-like protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325332195|ref|XP_023347950.1|4.164e-728.27uncharacterized protein LOC111716708 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold156_size297567supercontigscaffold156_size297567:75852..79437 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold156_size297567-snap-gene-0.25-mRNA-1maker-scaffold156_size297567-snap-gene-0.25-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold156_size297567:75852..79437-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold156_size297567-snap-gene-0.25 ID=maker-scaffold156_size297567-snap-gene-0.25|Name=unhealthy ribosome biogenesis protein 2-like protein|organism=Tigriopus kingsejongensis|type=gene|length=3586bp|location=Sequence derived from alignment at scaffold156_size297567:75852..79437- (Tigriopus kingsejongensis)
AGCTCCTGGACTGAGCGGTGTGCGTTCAAGTGTTCGGCCCGACACGCGGA ACCCTTGAACCGCTCCAACTCCGTCATGTATCGCGGAGCCAGTCCGAGTG AGGCGGCCACCGACCCGGAGGACTGGGCCGAGGCGTGGCCCAGGCTCGAA GAAGACCCCCTCACCGAGGCCAGTCCGAGCCCGGTGCCCCTGAGCGTGGT GTGTCGGGCCGATCACCCGTTACGGGTGGCACCGGCCGATGTGCCCGCCT GGTGGGACTGTCTGGATCAGGCTCGAACCCGCCAACTCGAGCCCGAGCGC CTGGCTCAGAGCTTTCCGGCCGTTCACCGGTGGCTGGCGTGCGCCCGCCA GACCGAGGACGTGGGCCCGGGTCTGGTCGGGCTCTTGCGGGACCTGACCC GGGGCGACCGGGCGGCGGGCAGCCGTTACGGGGTGTGGGTCATGGCCTGG TCGGCCGCCTTGCTGGGCGTGGAGCCGCCGCTGCCCGAAGGCACGGCGCC GTTCCCCCGAGACTTAATCCCGGCCCTGTCGCACCTGGATTTTGATGAGG CCCTGCGGGACGTGTTCCGGGTCCTGTTCCTCGAGTTGGGCACGCCGCTC ACGGTCTCGATCTGCCCCGGCTTGACCGTGCTCGAGTGGGTCCAGGCTTT CGTGCGCGAGCAGGTCGAGTCGGCCTTTCCTTGGACCGTCACCCCGGCCA TGGTCGACTTGTACACGACGCTGCTCCGGGCCCACCCCCAGGCCTTGGAG CCCCACACCGGCAGCCTGACCAGCCTCTTCCTCTTTAATCACGAGCACAT CGACTCGGATGCCTTCGTGGTCTTGGCCCTGACCAGCGCCGGTCAGACCC GCCAATTGCCCAAGCTCGTGTCCCGCGCCCTTATGGCCGCCAAGCGTCAC GTGGGCTTTCTCCGCTTCAGTCCCATTCGCCCCGCCGTGCACGACAAGCT GGCCCTGGCCATCATGGGCCTGCCCAAGGCCCAGGTCATGGAGCTCTGGA AAACGCTCCTCTACCATTTCAAGACGGACTTGTGCCCCGAGGAAGTGCCC TTTGTGGCGCTGGCCGACTATTTCATGGGCACGTTCTTAGCCAATGTGAC TGTCCTGGATCATAACGTGCCCACGTCGGTCTTGCGGAAGATCGTGCCTC TCATTCACGAGACGCACACCATCCTCGAGGCCTTGGCTGGGCCCGTCCGC GCTCAAATACCCCGCACCCAGCAATCCTTGCTCAGTTTGGCCATCTTCCT ACAAGAGTACCGCCACACCCAGTTTCCCGACCTAATCAATGGGAGCAAGG CCCAAGAGCTGCTCGGTTCCACCCAGTTGCCCGAGGTCCAAACCGCGCTC GAGATCATGTGGGTCGAGGGTGAGCGGCCCAGCCCCAGTCCCACCGTCCG CCTTGAAGCGTTTCCGGCCCGCGCACTGTGGCACGACCTGGCCCAATTTG AGTCCCATTTCAACTTCGCCGATCTGGTCAGCTACATTGGCGTGTATCTG CCCGAGTCGGACCTACCCGGCTTCGCCTCTCGCTTCCGAGAAAACCACCG TCTGCAGACTGCACTAGTGCACGCCATCATCATTCGGGTCCACGATCAAA TGGATGTGGACGACACGTGCCAAACCGTTCTCCGACCCCTGTCTGTCCAC GACTATCGCTGGTTGAAATTGGCCGAGGATCCCGAACAGTTGGTCCAGGC CATCACTCAGTGCTACCAGATCCTGGCCCAAAACTTGATCGGATTGACGT CCAACCCCGCCTTGGATTACGTCTACTTCAAAGTCGTGCTCCATGCCCTC ATCGCCGTGCCCCTCAGTGCGATCGATCCCGTGCTAAAATCCCTCGCTTT CCTCGTCAACTATCTCCTTTTGGCCCTCTCCTCCTTCAACGACATGAGCC TCATCATCGCTGAGAACCTGGGCAAGATTTGTGACAGCACCTTCTCGCGA TTCCCCGGTTTCAAGTACATCAACGGCATTCAGCTCTACTTCAAATGTGT GGATTTCAAAATCGTGGGCCTCATGCAGAACTGTCCCGTCTGGGAAGGAT TCGCCGGCTTTGCCAAGGCCATCGTGAGTCGGATTCACGAGTATGAAAAG CTTCACGGGAACAGTCTCAAAGAGTTTCAAAAACTTTGCGAGTCTTCAAG GCCTCTCCAGGATGCTAAGAGTCGGAGACTCTTGATTATCTTCATGGATC AAATGGCTCGACCCATCGTTCAGAAGGACTCCAACGCGGAGAGAGTGGCC ATGTGTTGCAAATACTTCGAAGCCGGAAGGAAGTGTCTCATGGAAGTTCT CAAGCTCGAAGTCCAGAACGAACAGACCTACCTCCTCTACGCTCTCCTCA TCGAAGTCAATGCCGTTCTTAACCCAGGCCTCAACGAGAGGCTCGCGCTG AAGGCCGTTTATGAAGATATCAAAACCCAGGAACTGAATCCAGCCCTTCT CCGGCTTTTCACCGCCACCCTCAAGCATTGCCCCGACCTGGTTGTGGGAG TCCACGAACTTATACTTGAGCGCTTGAGTGGAGATGGCACCAAGTCTTCG GAGCCGGAGCACTTGAGTGCAATTTACATACTTCTTGTCGAGACGGTTCC ATTGAAGTCTCTGACGCCCTTGTTCGACATGCTGCCCAAGTTGGAAGACG TAAGGCCGTTAATTTGAATGATTGTTGATGCCCTGCTGTCAAGTGTCCTC TCTCTCTCTCTTGTTCAGCACCTCCCCTGTTTGCCCATTGAGTCCCTTCG CGTTTGGAAGTCTGTGATCAAGGCCAACCTGGACCCTGAGAGAAACGCTC AACGAGAGGAGTTCCTGGAGAAGTTTCTGCTCGCACTTTTGAACCACGCC AAGACGCATGGACGCGCAGACATCGTGCAATCGAAAGTCTTAAGCTTCTT CCTGCGAGTTGTCGCCGCCGACAAGGTAACCCCATTATTCTGCGCCAGCA GCATTTCATATCCCTAATGATGCCTTTTTCCCATAGCCCGTATGCTCGTC AGCCGTGGAAGCCGCGTGCCTGTCTCACTGCCTGAGTTTGGATTTGGGTG ACGAACGAGTTGGTTCTCGAAATTGGTTCATGGTCAACGAGATCCTGGGC ACAATTCTTCAGAAGCGATATCGCCGATTGGCGGTCAAGCGCATTGCTTT GATCTCGTCCGTGTTCTATCAGTTGGTATCGCACATTTCCCAGCCAACGA CTAGAACAGGCCCTAAGAAAGCCATGGCGTTGGAAAGGTAAGATAGGATT TCGACCCGCACGTTCTCCGAGTCGGTGCTTGACACCGTTCGTTGCTCTCC TCCTTTCAGGACCATGAACCTTTTGAAGAAGCACAAAGAGGACTTTGCGA GCATCGCTCCCAGTTGGGTGACCATGTTGGTTCAGGTCCTGGGCCAGCTG CCTTCCGACGCATTCCGCGAGAAGACCAAGCGACACTTGACGGCCTCGGC CTTCAAGATCATCGATCTCTGCTCCGATCACGCCTTTGCCTACATCGCCA ACGCCATCGATCCCAATGATATGTTGATGGTCAAGCAATTGATCAAGGAC TACAAACAGTTTCATCGTTACAAAGGCACCGTGTGA
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Synonyms
The feature 'unhealthy ribosome biogenesis protein 2-like protein' has the following synonyms
Synonym
Tk07668
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