vascular endothelial growth factor a-a, maker-scaffold176_size284796-snap-gene-1.24 (gene) Tigriopus kingsejongensis

Overview
Namevascular endothelial growth factor a-a
Unique Namemaker-scaffold176_size284796-snap-gene-1.24
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of vascular endothelial growth factor a-a vs. L. salmonis genes
Match: EMLSAG00000012376 (supercontig:LSalAtl2s:LSalAtl2s906:63861:86606:-1 gene:EMLSAG00000012376 transcript:EMLSAT00000012376 description:"maker-LSalAtl2s906-augustus-gene-0.12")

HSP 1 Score: 76.2554 bits (186), Expect = 2.224e-16
Identity = 51/129 (39.53%), Postives = 63/129 (48.84%), Query Frame = 0 
Query:  100 YRKELCSCQCRDLSAVQECYESGRVWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCIPEESNEITL--RKERSQDVPGSA--LLPSLELLIIGALLLGVL-FFVILTCSLWRHVHRLKTRLRRSAEVL 223
            YRKELCSCQC+DLS VQ CY SGRVWDPS                          KCIPEE+NE+    R ERS + P +    +   E++ I  L L VL  FV L     R  H     +RR  +++
Sbjct:  151 YRKELCSCQCKDLSEVQACYNSGRVWDPS--------------------------KCIPEETNELEAGERIERSHESPKTVKDAIFRWEIVAIACLTLLVLCLFVALIFVSQRRDHHRAVMIRRHDDIV 253
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BLAST of vascular endothelial growth factor a-a vs. L. salmonis genes
Match: EMLSAG00000012106 (supercontig:LSalAtl2s:LSalAtl2s868:259044:273007:1 gene:EMLSAG00000012106 transcript:EMLSAT00000012106 description:"augustus-LSalAtl2s868-processed-gene-1.7")

HSP 1 Score: 75.0998 bits (183), Expect = 2.974e-16
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:    1 MSEQEAKRQRVPDLLDAEVDPKRISEIVGVSERTVRNIRAAKKIGNGVERKEGSGGNGLKGNEAFLKSLEAKIKADPTASMRRLADEFDVDEITIRRA 98
            MSEQEAKRQ + D+L+A V+  RI +IV      V  +   KK G  + +K GSG   LK +   L +LE KIK +PT SM  L + F V   TIR+A
Sbjct:    1 MSEQEAKRQPISDILEAVVEVARILDIVKRPRSLVFKVANMKKNGEYLSKKAGSGRXNLKKDLEILSNLEKKIKDNPTKSMNHLVNNFFVAARTIRKA 98
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BLAST of vascular endothelial growth factor a-a vs. L. salmonis genes
Match: EMLSAG00000005891 (supercontig:LSalAtl2s:LSalAtl2s319:177085:177378:-1 gene:EMLSAG00000005891 transcript:EMLSAT00000005891 description:"augustus_masked-LSalAtl2s319-processed-gene-1.7")

HSP 1 Score: 52.373 bits (124), Expect = 2.200e-9
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 0 
Query:  124 VWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCIPEESNEIT 165
            +WD  +CMC CP+ST   CS+ + FDF ++C C+P  +N  T
Sbjct:    2 LWDMKRCMCMCPISTWTACSTGYSFDFLDTCICLPINNNAST 43
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BLAST of vascular endothelial growth factor a-a vs. L. salmonis genes
Match: EMLSAG00000000061 (supercontig:LSalAtl2s:LSalAtl2s100:182217:183023:-1 gene:EMLSAG00000000061 transcript:EMLSAT00000000061 description:"augustus_masked-LSalAtl2s100-processed-gene-1.11")

HSP 1 Score: 53.1434 bits (126), Expect = 1.334e-8
Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:  100 YRKELCSCQCRDLSAVQECYESGRVWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCI 157
            Y    C C+C D  A  EC  SG++W+   C C CP S+ + C +  +FD+  +C C+
Sbjct:  146 YDASSCKCKCNDRIARTECLRSGKLWNERNCGCICPQSSWRPCGTGFIFDYRETCTCV 203
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BLAST of vascular endothelial growth factor a-a vs. nr
Match: gi|961100537|ref|XP_014775258.1| (PREDICTED: uncharacterized protein LOC106872695 [Octopus bimaculoides])

HSP 1 Score: 93.2041 bits (230), Expect = 2.122e-18
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:    1 MSEQEAKRQRVPDLLDAEVDPKRISEIVGVSERTVRNIRAAKKIGNGVERKEGSGGNGLKGNEAFLKSLEAKIKADPTASMRRLADEFDVDEITIRRA 98
            +S +E+K QRV DLL+A V PK IS IVGVS +TV N++    +   + RK GSGG   K  +AF+K+L++K+  DPT SMR++A E +VD  TIR A
Sbjct:   16 VSNKESKCQRVCDLLNALVTPKEISRIVGVSIKTVYNVKNRMAMSKTITRKSGSGGINKKRTKAFIKALKSKVLKDPTKSMRKMAIELEVDNKTIRNA 113
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BLAST of vascular endothelial growth factor a-a vs. nr
Match: gi|961127171|ref|XP_014784635.1| (PREDICTED: uncharacterized protein LOC106879525 [Octopus bimaculoides])

HSP 1 Score: 88.1965 bits (217), Expect = 4.159e-17
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:    3 EQEAKRQRVPDLLDAEVDPKRISEIVGVSERTVRNIRAAKKIGNGVERKEGSGGNGLKGNEAFLKSLEAKIKADPTASMRRLADEFDVDEITIRRA 98
             QE+K QRV DLL+  V PK IS IVG+S +TV N++    +   + RK GSGG   K  +AF+K+L++KI  DP  SMR++A E +VD  TIR A
Sbjct:   31 NQESKCQRVCDLLNGLVTPKEISRIVGMSIKTVYNVKNRMAMSKTITRKSGSGGINKKRTKAFIKALKSKILKDPAKSMRKMAIELEVDNKTIRNA 126
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BLAST of vascular endothelial growth factor a-a vs. nr
Match: gi|1325258493|ref|XP_023325911.1| (uncharacterized protein LOC111699457 [Eurytemora affinis])

HSP 1 Score: 75.0998 bits (183), Expect = 1.025e-11
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 0 
Query:   99 EYRKELCSCQCRDLSAVQECYESGRVWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCIPEESNEITLRKE-RSQDVPGSALLPSLELLIIGALLLGVLFFVILTCSLWRHVHRLKTRLRR---SAEVLVPGGTILRGSHSGYPHHPPGS 244
            ++R +LCSCQC D+   Q C + GR WD S C C CPL   Q+C+   VF    SC C     +++ +  E RS + P S   P+LE +II  L L ++    +  +L   + +L  R+R    S   L      ++  H G P +  GS
Sbjct:  150 DFRPDLCSCQCLDILGRQSCLDRGRSWDESSCTCGCPLH--QQCAPGLVFQ-DASCSCSAPGLDDVQVFGEKRSGEEPQS--FPTLEHIIIAVLALVIIILFFILANLAVKIRKLSARIRFHPGSPNPLTDSDLEVKQLHPGNPVYGEGS 294
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BLAST of vascular endothelial growth factor a-a vs. nr
Match: gi|1325306654|ref|XP_023334938.1| (uncharacterized protein LOC111706322 [Eurytemora affinis])

HSP 1 Score: 63.5438 bits (153), Expect = 5.047e-8
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:   99 EYRKELCSCQCRDLSAVQECYESGRVWDPSKCMCRCPLSTLQECSSKHVFDFTNSCKCI 157
            +Y  + C C C ++     C E   +WDP  C C CP  TLQ CS+ +VFD + SC+CI
Sbjct:  168 QYNAQACRCVCTNVEERTACLERDMIWDPYSCSCSCPRHTLQHCSTGYVFDLSKSCRCI 226
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BLAST of vascular endothelial growth factor a-a vs. nr
Match: gi|918315744|gb|KOF85195.1| (hypothetical protein OCBIM_22020685mg [Octopus bimaculoides])

HSP 1 Score: 58.9214 bits (141), Expect = 6.787e-8
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0 
Query:    1 MSEQEAKRQRVPDLL--DAEVDPKRISEIVGVSERTVRNIRAAKKIGNGVERK 51
            M+ QE KRQR+ DL+   +EVDPKRIS IVGVS RTV N++    +GNG++RK
Sbjct:   29 MTAQEDKRQRMCDLVRRGSEVDPKRISNIVGVSLRTVCNVKKRMDMGNGIQRK 81
The following BLAST results are available for this feature:
BLAST of vascular endothelial growth factor a-a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000123762.224e-1639.53supercontig:LSalAtl2s:LSalAtl2s906:63861:86606:-1 ... [more]
EMLSAG000000121062.974e-1644.90supercontig:LSalAtl2s:LSalAtl2s868:259044:273007:1... [more]
EMLSAG000000058912.200e-945.24supercontig:LSalAtl2s:LSalAtl2s319:177085:177378:-... [more]
EMLSAG000000000611.334e-836.21supercontig:LSalAtl2s:LSalAtl2s100:182217:183023:-... [more]
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BLAST of vascular endothelial growth factor a-a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of vascular endothelial growth factor a-a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 5
Match NameE-valueIdentityDescription
gi|961100537|ref|XP_014775258.1|2.122e-1850.00PREDICTED: uncharacterized protein LOC106872695 [O... [more]
gi|961127171|ref|XP_014784635.1|4.159e-1748.96PREDICTED: uncharacterized protein LOC106879525 [O... [more]
gi|1325258493|ref|XP_023325911.1|1.025e-1133.33uncharacterized protein LOC111699457 [Eurytemora a... [more]
gi|1325306654|ref|XP_023334938.1|5.047e-842.37uncharacterized protein LOC111706322 [Eurytemora a... [more]
gi|918315744|gb|KOF85195.1|6.787e-858.49hypothetical protein OCBIM_22020685mg [Octopus bim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold176_size284796supercontigscaffold176_size284796:175014..178300 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold176_size284796-snap-gene-1.24-mRNA-1maker-scaffold176_size284796-snap-gene-1.24-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold176_size284796:175014..178300-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold176_size284796-snap-gene-1.24 ID=maker-scaffold176_size284796-snap-gene-1.24|Name=vascular endothelial growth factor a-a|organism=Tigriopus kingsejongensis|type=gene|length=3287bp|location=Sequence derived from alignment at scaffold176_size284796:175014..178300- (Tigriopus kingsejongensis)
ATGAGCGAACAAGAGGCCAAAAGACAAAGAGTACCCGACCTTCTTGACGC
CGAAGTTGACCCCAAACGGATTTCGGAAATTGTCGGCGTGTCTGAGAGGA
CGGTCCGCAACATCAGGGCGGCCAAGAAGATCGGCAATGGTGTCGAGAGG
AAGGAGGGAAGTGGAGGAAATGGTCTGAAGGGGAATGAGGCGTTTCTCAA
GTCCTTGGAAGCCAAGATCAAGGCCGACCCAACAGCATCAATGCGCCGCT
TGGCTGACGAGTTCGACGTGGACGAGATCACAATCAGGAGGGCGGTTCAC
GACGACCTTGGTTTTACGAGCTAGAGAGATAAACAGAAGCACTGTACTCA
CCATGATTAGAGCTAAGAATGTTTTATATCTGGAGCGAGTGAATGCAGGC
AAGCAGCCGCAAAAGAGAAGCGACAACCGCATTTGCTGATGTACGACTGA
AAACGGCGAGGCGTTGCCTGCGCTTGTGACAGCTTGCCCGGCTTGTCCCC
CNATACTTTTTTAGATAAATAAATGGCCAAATAATGGAGTTTGTCGCTTT
ACTACCGTATGCTACGAGTTTGGACCGAATTTCATGATGATTCCTCCGAT
ACGTAAAGCGACAAACTCCATTATTTGGCCATTTATTTATCTAAAAAAGT
ATGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGCCTGGACATTGTGATTTGTGATGGAGACAATCTCCGGTTGT
CGGCTGATGATTTGCAATGTCAACACAGCCAAAACAAAATTCTTTGAAAT
CCAGCAAGGGATTTCAGACAATCGAACAACTTTTTCACTTTAGCTCACTC
CCTGGTCCTTGGTTCACTCGATTCTGGAACGTTGAAATTTAATATCACAA
TCACTAGTTAAATCAGAAAGGGTGAAGAAGGCGACGTTAGAAATTGCCAC
CAGTTTTCTTGTTTAAGAGGCCTACGTATGCTTTATCCAAGCTGATCTTC
TCCGGCCAGAATTACACGGGCTCCTCTGTGATTTATTATCACAGTCTTAA
CGAAGTCAGGTTTCGACATCTCCCTTTCTCCCGTGTGGAATGAGATCAGC
TGCAATATTATCTGCCCAATGTTTGGAAGAAGTCGAGGGAATAAGCTCCA
CGTTCGTTATTGAGTTTTCTCATTTACCCCTTCCAACAATCGAAAGTTGA
GCAGGCTTGAACCTCCACCCTCGGGAGAAAATGCAGGCTATGAAGGTGTC
GCCTCCCCAGGACGATGAAATGCCAAAGCACATTTTATAACCCGTTTAAT
GATTCCTAATGTGAATTCGTCTATTCCAGGAGTACCGCAAGGAGTTGTGC
AGCTGCCAATGCCGTGATTTATCGGCTGTCCAAGAGTGCTACGAATCCGG
GCGTGTCTGGGATCCTTCCAAGTGCATGTGCCGATGTCCTCTGTCCACTC
TTCAAGAATGTTCCTCGAAACACGTGTTCGATTTCACAAATAGCTGCAAG
TAAGTTGGGTTATTTTTCTTTGCAGACACACCAATCGGAAGCGAAATGGC
TTCTCAGTATTCACGAGTCCAATCAACCCAAGATAAACAGTACCAAGTTT
ACTCAGTAACCCCTCCCGCAGACAGATGAGGGCATTGATCTGATTGGCTG
GCCCATTGATTTCGGCTTCATATGCATTGATTGGGTTAGTTGGTCATAGT
CATATTCGTACAATTTCCTCATTAGCCCGATAGTTAGGCACCAGCCATGG
TGGTTAATCAGGCTTTTGTGGTTCAATACCGCTCTGTTGATCTTGAGATG
TTGCTTCCTTCTCGGAGAGGAACAAACACTTGAGCTCTGTAACCAGATCC
AATCATGATTGGTTCAGGGACCTTATCAGCCAATCCTGCATGGAGTGTAC
GTCGACTAATACTGCACACTGTAGATACTGATGTAATGATGTATATTATT
TTGTAATTTAATTGGAACATGTCATCAGTAAAAGAGTGCACCTTGCTTAA
TAATCGGTTAGGAATGGTGGCATTGGAAACCTGTACTAGCTGATTTAAAG
AAAGGCGAATCTACGCTTGCAACCCCTCTGATCAAGTGAAAAGAATGGTC
AGAATATTTATCATAGCAACTTTTTTCTGAATGGGCCAAATCATTGACAG
CAAAACAAGAATCCTGTCTTCCCAATAATATAGACAATAAAGCATAGTTC
ACATCACTCAAGTTGTCGAGTGTCTAAACGAACACTAAAACATACAAGAT
CGGAAGTAAAGTCAAACATTTTTATCCTTTTAACTTTACATAAGATTTTT
TGAACCCCCGACTCAAAATATATTTGATGGATTTCAAATGGACTTTGCTT
TGAACCCAAATTATGTTACTGATATAAGTTGCAGTTTCCTTGTTCAATTG
TCACTCATGGTCGCATGGCCGATTAAAACAAGGGGTTGTTTTTTATTTTC
ACGATTTCGGGCTAGTTTCCTGCCATCCTTTTTTTTTGTTTTTACGATTA
TATTTATATGCACTTCTTAAATTCTTTAGTGTGTTGTCGTGCTTTTATAT
GCCTGGATAGGATTACTCAAGTGCTCTCTGGGTAGTGTTCTTATATTAAG
ATTGATTATTTCATATTGCCAGTATGTAGATCATTAAAAACCTATGAAAT
ATTGGAGTGTCTGGATATTTGTGTATAATATTAACTAATAATAATAAAAA
CCAAACAAATACTGGATTTTGACATAAACCTAAGCAAAATAAAGGACCTT
TAAACTCGAGCTTCTTTGGAATTGACTCAATGACTATTTGACTCGAGTTA
GGTAAATACTAATCAACTTCAGCATTGCAGATCAATGTGATTGACCCGCT
TCCCTTTCTCTTTTTCAGGTGCATACCCGAGGAGAGCAACGAGATCACCC
TCCGGAAGGAGCGCTCCCAAGATGTTCCAGGCAGCGCCCTCCTGCCCAGC
TTGGAGCTATTGATCATCGGGGCCCTCCTTTTGGGCGTTCTCTTCTTTGT
CATACTAACCTGCAGCCTTTGGCGCCACGTCCATCGGCTCAAGACCCGTC
TGAGGCGCTCAGCCGAGGTTCTCGTGCCCGGTGGAACCATCCTGAGGGGT
AGCCACTCCGGATATCCGCACCACCCGCCTGGCAGTCTCATGAACGGCCA
CGCCCAGCCCCATGGGAGTCCCACCTAGGGATTCGGGGGGCGGTATAGGA
GATACTCAATCGAACAAGAAACCGCCTTGGCGGCCTCACCCCTGCAGCCC
ACCTACGACGAGGCCGAAACCACGGCCATGATCTCAG
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Synonyms
The feature 'vascular endothelial growth factor a-a' has the following synonyms
Synonym
Tk06862
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