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Associated RNAi Experiments
Homology
BLAST of YTP1 vs. L. salmonis genes
Match: EMLSAG00000003292 (supercontig:LSalAtl2s:LSalAtl2s180:493171:494827:-1 gene:EMLSAG00000003292 transcript:EMLSAT00000003292 description:"maker-LSalAtl2s180-augustus-gene-4.19") HSP 1 Score: 49.6766 bits (117), Expect = 3.227e-7 Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0
Query: 163 MAGIKERLSRYFGSITIEPAIFLYMLGGVIVGGAALN-SNLLIQKVCLQEFNYNATICDHLELEENEYFENNVQTRVNNFQMNAQWIGSVPTLVYSLFA 260
M I ++ +IT+EP +FL+ G+ G ++ +L I KVC N++ TICD ++ ++E + VQ V+ Q ++ +P ++YSLFA
Sbjct: 1 MTSIWKKTRYILDNITLEPVVFLF---GLSHGLYSITVQSLYISKVCAVNLNHSLTICD--DIYQHEEIQTEVQKYVSQLQAYNFFLQGLPAVIYSLFA 94
BLAST of YTP1 vs. nr
Match: gi|961375172|gb|ALS04330.1| (proton-coupled folate transporter-like protein [Acartia pacifica]) HSP 1 Score: 69.3218 bits (168), Expect = 8.141e-10 Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 0
Query: 163 MAGIKERLSRYFGSITIEPAIFLYMLGGVIVG-GAALNSNLLIQKVCLQEFNYNATICDHLELEENEYFENNVQTRVNNFQMNAQWIGSVPTLVYSLFA 260
MA + ++++R ITIEP + LY V VG + SNL+I K+CL + NYN+TICD+L + N +++ VQ V +++ + +P ++Y L A
Sbjct: 1 MAALCDKINRLRFPITIEPLVLLYT---VSVGLNEVIRSNLIISKICLSKLNYNSTICDNLSEDNNTQYQDEVQKHVTDYESVYSSLAFIPRILYGLLA 96
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold345_size201316 | supercontig | scaffold345_size201316:4517..14181 - |
Analyses
This gene is derived from or has results from the following analyses
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold345_size201316:4517..14181- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >maker-scaffold345_size201316-snap-gene-0.10 ID=maker-scaffold345_size201316-snap-gene-0.10|Name=YTP1|organism=Tigriopus kingsejongensis|type=gene|length=9665bp|location=Sequence derived from alignment at scaffold345_size201316:4517..14181- (Tigriopus kingsejongensis)
AATCCACCATGAAGAGCTTCATCTATCCCATTCTCCTGGCTTTGGCCGCC
TTTGCCTACTTGGGTGGAGCCTCTCCAGCCGAGCCCGAGGATCCCATTCC
TGAGGACTTTCAAAAGTTTGTCCAAACCGAGGTCACTCTCAGCGAGGATG
AGGAACCCGATATGGACGAGGATGAAGAGGACAGGAACGATATCGCCATG
TCTGGATCCGAGAACAGGTACCCACATTTAAGAGCTTTGGGCTGATTACA
TGGAACACGGAGGAAAACTTTTTTTCCCCTGGGTGTCTACATCTGATGAC
TTGGCTTGTATTATAAATAGCACAGAGAGGTAACATGATCGATCCATAGG
GGAGAAGGCGGCCGGTACTTAATGCCCTTGTGCTGGCGCCTGTTCGCTCA
GCCAGCTTTGGTTCCCTTGGAACATAATTTGCCCTCAAAGCTGTTATAAG
AGTTTGGAATGAGATTGGTAAAGGCTTCACTACCAACCGCATGGATTGTC
AATTGTGAATTATATGGGTCTTTGCTTGCATTGGTTGTATCTAATGGCTT
TCACTTTCCAGGATCTTGCCCCGCCTGTGGTGTCGTCTGAAGTGTGCTCC
CATTTGCATCGCCAATCCCAATGCCACTTGCGTTTGCACCAAGACCTTTT
TGGGCATCTTCCCGCTCTTCACCATTCGACTGCCTTGTTGCTAGACTGTT
TCAACCATTCCCACTAGGATTGATTAGCCCAAATCATGGCAATTAGGATG
CACATCCATGTTCAATGTCAATGCTTAATTTTGTTACTGCATTAAATACC
AGGTCATATGCGTCCCACAGGCAAAATTATATTCAACGAATGAGCCAAGT
GCTCTACCAAAAATCAAGGCTTGGAAGTCGATTAGGCGGAACTAACCAGA
CTGACAAAGAGTGGCGACGATCGAACCAAATTGGACGGGATATCAAAAGC
AGAAATGGGTAATAGCTGGTCGCGGTAGTCAAACATAAAATGCTTGTTTT
TCGTAGCTATTTGTATTGAAAATTTGGCATACCTACTGTACAGTGTGAGT
CCAAACACGAAAAGCCTCGCCCATATAAATTCATGAGCAATGTTTATCAA
GGAATTCAAAGGACTTCTAAGAAAGTGACAAAAGGAACGAATTTTAGAAA
TCCATACATTCTTTATTCAATCGTGGTTGATGAGGCTCGCAATGATCGAC
CTCGTTTCATCCATGACGAGTTCGTGGTTTTAATTAATTTTGTTTCGTAA
AGTAATGAAGTTGAATTTTTAATGGTTTCTAGTAAGTAAGTAAGTAATTT
CGACAACAGTCCCAGGACAAAAGATAAGCATAGCTTGTTTTCACTTTAGC
CCCTGGAAAATGACACATGGAGGTTGATGGTATAATACGAACACATTAAA
GCACAGAAAGGATAGGGGAAAAATTGTCCGACGATGCAGGGATGTAAAAG
GAGAAGAAGACGTCTACAAATGACAGAAGATATTGAAATATTTTCGGCAC
TAAAGTCCCAAACACGATAAAATTCAGAGCTAATACAATACCGTATACAA
AAAACTTCTGCTGGGAAAATACAGCCCATGGCACACTAGAATAATATAAG
GTTTGACGGGAAAAAAGAACACCAGCAAATGTACGATAAATACTGTATAA
GACCCCACCAGTGCCACATGACAAGAATGGTTACGTTTGTAAGAATTACA
ATCTAGGATATTACAAACTTCAACAGGGCTTTGGTGTTTGGACTCACCCT
GTAGTTCCTCAGTGTTAATAATCAACGATCGGGTATATTATATGCATAGT
AGGTTCCTATATCGTTGTATTGCATTACTTTTAACATGTGTACTGTATAT
ACTTATAAATGGCCCTAACACTATTGGCTGGCATTCGTTGGCTAAGTGTT
GACTCCCGGGCATAAACCAAATTTTTCTATAAACGATTACACACACTCAA
CAAAGAGATCAGGAGCAAGAAATATTCATACCCAATTCGCTTAATTGTTA
AAGATTTGTTTATCCTTGAGGGTGAAAAAGCTAGCCTCTTTGAAGCCAAA
TGAATCCCAACACCAGGAATTCGGGTCACTTTCGATACAAAAATCCAAAG
CGCGTTTAAGACCATTTGATAACTGCTTATTGGCCAAGCATGCCCGGCAA
TTTTAGTCACCAGTTAGTTGGGGTATGAATTTAGTAGAGCCTTGTGATTG
AAAAAGGATATAGAAAAACTAGTTCTTACCTTTTTGGTGGTCCTAAATGA
GTCTTCCCTGGGCACGTATTGGATGTCATAGACGAGAGTATTGTTGGGCA
GGATATCTTGAGCCTTGTTGATCTTGTAGACGGCATATTTGAAGGCCAGC
TCCGTGGGACTGTCTTTCTGGTCGTCTGAGAGACACAATTTCCATTTTAA
AGAGTGTCCGTAATGGGGTTGAGTCAAGATAATTTAACTCACCAGTGAAG
ATGGCCCCGATCCTGATTTGGGATGGCAATGTAATGGCCTCACGAATGCA
TCCCAGCATCAGAGGGCAGAGCAGGGCCAATCGATGGAACAGCATGGTTG
TTGGTGCCGATTGACTTAATTCCAGACTGAAGCCATATCAAAGTGTCGTA
AAATCTCCGGTCGGGGTATCACCCAGCGTGGCCACGAAGCACATTACAAT
TTCATGCCATCCCACCAATGAGGCTCATTTCACAACACACAATGGGCATA
GGCAAGTCCACTCCGTCCACTTGCTCCTCTCCAACGACTACTGCCCTTGT
TGATGCCTCACAGTCTTCTCGGAGAACCATCCATCCTTGCCCTGGCTGTC
AGATCTAAGTTTGCCTCCCGCCAAATCCGTCCAGCTTTTCTTGAATGTCT
TGCTTCCAGGGGAGGCGAGCCTGCCACCAGTTCCAACCGGGAGGGTATTT
CCACAATGGGACCAGGATGTTCCCAGGTGGGAACCTTGGAACAGACGTAC
CAAGTCATAGTTCGTTTCGAGCTCGCAACCCCCTCACGAGGTTGACCTCT
CTGGGTTGTAGTGATAAACTGAGGCTTGTATTGATGAAAATCAATAAGAA
TCCTACGTCTTAAAAAACAAAAGATCTTTATATTAAAAAAAAAACTTTTG
TGGTACCGCTTATTTATTTTACCCTCCTCACGTCTTGGGTATTCACTTTT
GTACTCGACTAGTTGAACGTAAATTATATTATTAAGGTTGAACTAAGCAA
GTTCAAAGCTAAATTTGCTTTGCGTGGATTTTGGAGACACTTTAAAATTT
CTGTAACTTAATTCATTTGAACCCAAACCTATGTGAACACATCCAAAATG
TTGCCAAGTAAGTTGACTTCTCGAAGAAGGGGCCAACTCGAAAACCTAAC
GAAATTATCATGGCAGAAGATGACATCAAACTGCATCGTTTTTTATGCCA
ATGGATCCAATACAAGACTTAGGAATGGAACAAATATTTTTTTGTAATTG
ATTCACAATGCTCGATCAGCCATGCCATGTCCATGAAGTTGCAATTCGTT
CTGTCTAACTGACAATGATTGGCATTGTTGTCGAAATACACCGCCTTGCT
TGGCTATGAAAGGCAAAAAGAACCTTGAGGAACCAACCTAGGATGCATGA
GCTCAAGAACAAGCCGTGAGAGGAGCGAACAACTTGACGGGACCAAGGCA
AGACGAGTAGTTCCCAGTGGGGCCAGGCACACCGAACTCTGTTCTCCCAA
GAAAGGAACGAAGGCGGCTTCTCTATATATAGAGAGATAGAGTCAAAGAA
GGGGAGAGGACGAGGGAAGACCAGCAAGGAGATGGGAAAGAGGAACAAGG
ACCACGGGCCATAAACTTGAAGCCTAACGCCCTCGGTGGTGGATGTCTCC
TTGTCTACCAGGAGCAGACTAGCAAAATTCTGTTATTGTACGTAATATTT
ATTTGATGTTGCCAGAATGTTGAAAAGATTTATACAAATTGGGAGCAACC
AGGATCCTAGGTAAGCGTAATAGCTTGTTTTCACTAGGTCCTTCATATTA
TAGAAGATGATACAGATGGAGTATGGATATAATGGCGTAATACAATACCA
ATACAATGTTTCGAAATACGTAAAAAGCAATAAAAGAAAAATGAGTACGA
CGAGGCAATACAATAGTACATGTGAAGTAAAAAACCATGTTCATAGATGG
AAAACAAAATGGACTCATTCGACTCTCTGACATAAAGGCAAGGCTGGGTT
TGAAGGTCAACATTTCAATATTTACTTGTATACGTAGACGGCACCCGGTT
ATGGAGATTGAATGGTGAAGTGGTCAGCGAAGAAGTCTCCCGTTCTGAAA
GGCCGCAGATCAATTCCCGGGCCCGGCGGATCAATAAATTTTCGCCATCC
CAGACTTTCTTCTACTGAGGGGAGTGAATGACGACTCCCTGTAACCTTAG
TCGTTCAAGGTCAGCAAAAACAGGTCCGGCCACATCTTGAGGAAAGGGCC
CGTCTGGTTCCCCACAAATTAAAGTAGTGATTGGAGCTGGATTGTACGGG
GCTGCACGCTTACTAGCTACTAATAGCTAATTACATCAGTGGGTCCTGTG
TTCACCATGGGGGTTCTATGGTGTAGAACACGAAACCTCCGGAAGGTGCG
ATTACACACACACCCTATGCATTTGGCATGGACGAGCTCAGTGTTGTTGG
CTATGCCGATAATGTGGTCCTCTGGGTGAGTGGGAAGGACCCCACAGTGG
TGGCCTCCCAGCTGGCTTGACATGCATCAAACTTTGCCTGCTTTTCCTGC
CATCTTCCTTGTGGCAGATATCTATCCCTCCTGGCTAAGGGTATTGTCCT
CGGAAAGGTAGGCTACGCCACTGCAGCCGTCTCTGCCCCCAGGCTGGAGG
GTAATCTGTCTGCTTCTACCACCAATCAGGGGGCAATTCAGATTGTCCTT
AATGACGTGGCCAGGTCCTTAACTGGCTGCAAGAGGAAGGACCACGTGAG
GCTGCTTGATCTGCTCGGCAGGGCCGGCATCCTGCGCCTCAATGCCATTT
CCGTCAAGGCAACTGCCGTGGAGGCGTGAAAGGCTCACAAGAGTAAGGAC
GGGCCCAACGGATCCTGCAACCCTGTTGGCAACCTACTCTTTGCCAAGAA
CTCCAGCAGGGCCACCAGAACCGGGACGGCTGGTAGTGTCCAATTCCCTC
TCCGCACTGCAGCAGACACCTTTGTCTGGCACTCTGCCACTGTGTGGAAC
CACAGCAAGGCACTGAGGGAGGCCCCTCAAGAGGAGCAGCAACCAGGGTG
GCAAATGAGCTGGCTGCAAAGGCCGCAATCTAGTCATTTTTTGTCAAACT
TTTATTTTGTCCCCACTTGTTTGGCTGTGTTTTTCAATTTTATTCAACTT
TTGTTTAAACTGTGTCCTGACACTACAACCAGCAAGTGCTTGCTAAGTGT
CTTAAATTGGGCTTATTAATCCAATGGGCTCTTAAATTTGGAGCATTAAT
GGGCTGAACATGGCCAGCCTGTCAGAGTCAGCAATGTTTTCGTTAATGGA
AAACCAGCTCCAGCTTTTTAATGCTGGATTTCCAGTTTGCAAATTTGGTC
ACTTTTGAGTTTGGCCCCAAGTCTGGCAATGTAAAATCGTGAGTAATACG
TCCAGTTGTACAGAGTTCCGTGGGTTAATGAAGTCCTTTGCAGTGTGCAC
TGTTAGTGTGAGCAAAAGGAATAGGATCAGTGTTTGATTGGTGAGAATGG
GAGTGAGAATAAGTGGGGATAGAGCCTCCTGGATACAAACCCTGTTGAAA
TTCTTCTAATTTGGCATTGAACTGTTTGCAGTAAAGCCACACAGACCTTG
TAGATGGCGCATAAAAAAGCTTGGGATCAGCTGGCTCACTAACCCAGCTG
GATGGCCAGGTTTCGAGAAATTCCACAAATCTAGACAAAATCCTCCACGA
ACTGAGACCCAAACGGGCGTTTGTGAAATTAAAACAAAAGTTAATTTTTA
AAACTGGGATGGAGAAATGCTCTTGTGTTTTTTGTGGCGTGATCAAATGC
AATATTCAACATTTCTTCCCAAAACTAAGAGATATGCTTTGTTCGTTGGC
AACGCCATCTCGGAGAATGGTTCAATCCTTTGTTGCTTTTCAGTGTCCAA
GCGAAATTGTATTTGTAAACAAAACATGATGTGTCAACAAAATCAAAGTC
TACACATAAAGAAAATAACATGTTTTGTGCCTTGATTTTTTGGGGGGGAA
TTATCTGGTAAATTTTGGACCCCTAATAAATTCTAGTGAAAAAACAGGTG
AAGTTCAGGACTGTTATAGTGATATTTTAAGACAACCCATTGCAACACTG
AGTCACTTGTGTAATGGAATCCGAGCAGATTCAATTTGCCAATTTGCCCT
TATGTATAACCAGGATACGAATGCCCAAAAGTGTTCAAGGTGGTATCACA
ACCTACAATGAAAAATGCCGCGTCGTATCCAGGGAGGTTCGAAATATCCA
TGCCACTCTCTGTCCCAGCCTGGCGTTCACTTTTCGTTATGTTCATCATA
AAGTCTCTCTCGTACTTCTTATCCCTCTGGTGAGGAATATTACGGCTGCC
CATTTTGGAGTACAAATGGTGCAGAGGGCTTTCGACGGACATAATGAAAA
GAAAATATTAAGAAGTACGGAGACGACAAAAAATGAACTTTTGTAAATCT
TCATTTTTTTATAATTTGCGTCCGAGATTTGAAAATTGCAGGGGTTTCAT
TGTCGACTGTGCTCCACTGGCCAAGCCAAGAGGCCCCCCTGCTATTCTCT
TCGACTGACAAAGTTACCATCAGTATCCCTTATGGCGTCAAAAACATTGA
ATATATTTCTAAGGTGGCAGCTGCAATTTTGGAGATAATTTGCCAGGTAA
ACCAATGTAAGGACGCAAATACGCTATACCTCCTTCTTTACGCTATACCT
CGAATCTCAATGCTAAAACTCTTATTATCAGATGAACTTTGCCCATTCAT
TCCATGGGCATTTTTTCTCGAAGTGTTCAAGGTGGTTTTAAACTAGGGGG
TTAACGGAATCGGTTGAGAAATGTGTCGGTATATCTCGAGAGAAATCGAG
AAATTAAAAATCTTGCACTAAAAACCTACGCTTGGGACGGGAACAAAAAA
TTAAAGATAAATTACCTAATTCGTGCCGATTGATCACAGGCTCTCCCACT
TTTATCCCGCCAGGGAAATACACATATAGCTAATTTGTGTGTGTGTGGGT
GATCGCTTATTTCAGTCAACAATATTCAACAATAACGAAACCCCTTAGGA
AGGCATACTAGTTATGCTGAGTTTCATGAATATGTGAGAGGAAAAAAGTG
AAGAATTAAACCACGTGAGAACGTTCAGTGGAGGTTCGGCACAGCAATGG
CCAGATGTTGAGCCACAAAGCTCTGCTTCCTCTGTGACTCCTCTAGGTGT
TTTTGCTCCCTTAGGCTGCAACGGGCTTGACGGAGAGCAGGTCACTCCTC
CGCCCGTTGCTGTTACCCGATGGAGTGGTTCTGCTGGGCCTTGAGTGCCA
AAGGCCGCACACCGACTTGCCTGCTCGGTCCTTGATGCTACAAGTGTCAT
GTTTCTTCGGGCATTCGTGCCTGTCGCATTTGAGGTCTCTGAAGAGGGAG
CCACAGAAACCATGGGGCTTGGCAAGCTTGACCTTGTTCGCCTTGGGGTT
GAAGTCAATGGTGGTATCCATTGCAGGGGTCACGCTGGGGGTCGCAATGG
GGGTCATGGTGGGGGACATCAGAATCTTGGTAGGTGTTCCTGTTCATAAG
GAGTCGACCCGGCTGGGCGACACAGGGCCAGGGGGTGGAAGTTCACCGAC
CGAGGCCACCTCCATGGCCGGCTTTCCTTTAGACTCCAGCCACTCAATGG
CCCTGTTCCTATTGCTCCAGTTCTCGAGCATGAAGGCCAGAGTTATGCCA
ATCACTTCTTTTGTACAGCGTGCCGACCAGGTGCTGAACGAGACGGTCTT
GGTCAGCTGTAACAGCTCCAGGGTCTTATTGGGTCAGATTGCCCCATGAT
CTGTCTTCCATTTGAAACGCCAAACTTTCACGAGCACAAAATGAGTCACA
GAAATGCCTTAATTAGGACATCGCATAAGACATGTGTGTCTTTCATCTTC
CTTTGGTTTTGTGTTCGCACCATGGACAGGCATCCATGGGAACACAGGCC
CCCCTGATGTTACTAGCTAATTTAAGCTAATCCCTGTGCAGCCCTGTACA
ATCCAGTTCCAACCACTATTTTAATTTGTGGGAAACTAGAAGGGACCCTC
CCTCAAGATGTGGCAGCACCTGTGTTCCTGACCCCCAAGGAAGTAGGGTT
ACAGGGAGACGTCAGCTCCCCTCATTAGCTGAAAGTCTGGAATGGGGAAA
AATTCTTTATCCGCCGGGTCTGGTAATCAATCTGCGGCTCTGGAGGACCG
CAGACCTCATTGCTGACCAGTGTACCATTCAGTGCCACCCAATTAAGCCA
AGATGCCAAGTTCACAGTTATTGTAAAAAATTGAACCATTCATGACGTGT
TGTTTCACATCAGCATTAGGCTGCGTGACCTCTCTCTGCCTTAAAACGCA
AATTCTTTATGTCACGTGACCTTTTCAGGAGCCTGCCGCTCCCGTTTCTT
ATGTAGAGTTCCTTAACTGGTGTCAAAATTTGAAGCAGTGGATTTTCAAC
TTTTCTCCGAGTCTGACATGGTTTTAAATCATATCCTGTGTCAAGTATTG
TAATTTGCTTTCCGGTTCTATTTCTTGACAATTCTACTAGCATCTTTTTG
ACCACATAATTAAAATTATTTTTTCGACGGCCGGGAAAAAATGTTTTTTT
ATTTATACAGGTACAATAGGTTTTAGTTATTTTTAGCCAATGTTGATTAT
AGCCTCTAGCAAACGTGGAAGTCAACTCTGCAAGGCCAAAAGGCTATAAG
GCCAAAATAATGAAAACGTAGGCAAAAAAATGATTATTTCAAGCAAAAAT
TACAGAGAGAGAAGAGTTACATAACAAGGCTTTCCAGCGATCGATTATAG
AATTCGAAAATGGAATCAGGATTTCAAATTTCGATTATCGATATTCCATT
TACGATGTATTGGTCGATATTTGAGACACGCGCATAATCAGCTTTCATTG
GTCTATATTTGTAATTTTCCAAATTTTGCTTCTCCAATCTGTATTTTTCG
GTGGAGGTAGTTGCTTGACAGGTTTTTGAGCTTCTTTGCGCCAATGCAAT
GCACTCAATAAGACTGAATGTGATGAGTAACATAATGAATATGAGCTCAA
GTGAAAAGTTAAGCAATAATGAATTCCCATGTCATCACCAAGTGAGGAAA
TTTGTTCTTGCTTCATATTAACATATGCTTTGGATCTCACTGGGCCTTTC
AGTGGCCTGGTTGCACTCATCATGGCTGGAATAAAGGAACGCTTGTCTCG
ATACTTTGGCTCCATCACCATCGAGCCAGCCATTTTCTTGTACATGCTTG
GTGGTGTCATTGTTGGCGGAGCAGCCCTGAATTCCAACCTCTTGATACAA
AAGGTGTGCTTGCAAGAGTTCAATTACAACGCTACCATTTGCGACCATTT
GGAGTTGGAGGAGAATGAGTACTTCGAGAACAATGTTCAAACGCGAGTGA
ACAACTTCCAAATGAATGCTCAATGGATTGGATCCGTCCCAACATTGGTT
TACTCCCTCTTTGCG back to top
Synonyms
The feature 'YTP1' has the following synonyms
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