intraflagellar transport protein 25 homolog, maker-scaffold405_size181423-snap-gene-0.33 (gene) Tigriopus kingsejongensis

Overview
Nameintraflagellar transport protein 25 homolog
Unique Namemaker-scaffold405_size181423-snap-gene-0.33
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of intraflagellar transport protein 25 homolog vs. L. salmonis genes
Match: EMLSAG00000000065 (supercontig:LSalAtl2s:LSalAtl2s100:464017:469858:-1 gene:EMLSAG00000000065 transcript:EMLSAT00000000065 description:"maker-LSalAtl2s100-snap-gene-4.25")

HSP 1 Score: 50.447 bits (119), Expect = 1.653e-7
Identity = 27/108 (25.00%), Postives = 50/108 (46.30%), Query Frame = 0
Query:   23 RTGTKPWISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            ++  KPWISTG++PQ IV+ F     +    +K Y VKE E   S      +F ++  + I +        +  +  +    +   ++  I  G+D+   +Y +S+ G
Sbjct:   31 KSTNKPWISTGLFPQFIVIQFPDTMTVQSCEIKCYKVKECEFLRSQG--KGQFLSIERKVIDMDPIRTDSPLYLDFKDFEEFDTDSVKFLIHSGYDAVVGVYSISVMG 136          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|919060983|ref|XP_013412156.1| (intraflagellar transport protein 25 homolog isoform X3 [Lingula anatina])

HSP 1 Score: 77.7962 bits (190), Expect = 3.593e-14
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGSDADHS 136
            W++TG+YPQ  V+TF  L  I+ V ++S+NV+++ V  S +++ TEF  +  + +  + G  QE+ I C GN    + AQHL+  I  G+D F  I+Q+ + G +A HS
Sbjct:   12 WVTTGLYPQEFVITFQALMNINTVRIQSFNVRKITVGRSVSNEPTEFELLREKDVESTDGQLQEEEIHCGGN----LTAQHLKFTIQSGYDHFATIHQVHVDG-NAVHS 115          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|919060977|ref|XP_013412153.1| (intraflagellar transport protein 25 homolog isoform X1 [Lingula anatina] >gi|919060981|ref|XP_013412154.1| intraflagellar transport protein 25 homolog isoform X2 [Lingula anatina])

HSP 1 Score: 78.5666 bits (192), Expect = 4.772e-14
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVI-CNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGSDADHS 136
            W++TG+YPQ  V+TF  L  I+ V ++S+NV+++ V  S +++ TEF  +  + +  + G  QE+ I C GN    + AQHL+  I  G+D F  I+Q+ + G +A HS
Sbjct:   37 WVTTGLYPQEFVITFQALMNINTVRIQSFNVRKITVGRSVSNEPTEFELLREKDVESTDGQLQEEEIHCGGN----LTAQHLKFTIQSGYDHFATIHQVHVDG-NAVHS 140          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|926616282|ref|XP_013773252.1| (intraflagellar transport protein 25 homolog [Limulus polyphemus])

HSP 1 Score: 75.485 bits (184), Expect = 5.627e-13
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGS 131
            W +TG+YPQ  V+ F    ++D V++  YNVKE+ +  S++++  EF  V  + +  S GA Q+  I + +      A++LR  I  G+D FCA+Y++ + G+
Sbjct:   45 WTTTGMYPQCFVVAFPSTSSVDSVIISCYNVKEIRLEKSTSNEPVEFEKVGQKELTASSGALQKDTIHSES----FEAKYLRFVITSGYDHFCAVYKIQVSGT 143          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|573877880|ref|XP_006627179.1| (PREDICTED: intraflagellar transport protein 25 homolog [Lepisosteus oculatus])

HSP 1 Score: 71.633 bits (174), Expect = 1.455e-11
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGS 131
            WISTG++PQ  ++ FSG + I +V ++SYNVK +++  S+   AT+F  +    I   F   + Q+  N   +    A HLR  I  G D F +++++ + GS
Sbjct:   37 WISTGMFPQEFIIRFSGTQKIRLVTIQSYNVKNLKIQKSTFSDATDFEGI----IDKEFEHTEGQLQSNDFALNGTRATHLRFIITSGFDHFVSVHRVMVEGS 135          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|676424580|ref|XP_009044253.1| (hypothetical protein LOTGIDRAFT_208671 [Lottia gigantea] >gi|556117056|gb|ESP05708.1| hypothetical protein LOTGIDRAFT_208671 [Lottia gigantea])

HSP 1 Score: 68.1662 bits (165), Expect = 2.475e-10
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRGS 131
            W + G+YPQ  V+ F+ L  I+ V +  YN++++++  +S+D +  F+ +  +    S  APQ +    GN    + AQ+LR+ I  G+D FCA+Y++++ G+
Sbjct:   37 WATCGLYPQEFVIRFTSLVNINSVSITCYNIRDIKLEVNSDD-SQNFKTIEQKEFQSSDSAPQIEDFSFGN----VKAQNLRVVIESGYDHFCAVYKITVNGT 134          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1129964090|ref|XP_019741336.1| (PREDICTED: intraflagellar transport protein 25 homolog [Hippocampus comes])

HSP 1 Score: 68.1662 bits (165), Expect = 2.549e-10
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQL 126
            W+STG++PQ  ++ F+ +  +  V L SYNVK ++V  ++++ A+ F  V  + + L+ G  Q   I     +G  NA HLR  I  G+D F A++++
Sbjct:   37 WMSTGMFPQEFIIRFAEMTNVSSVTLDSYNVKHLKVEKNTSENASHFEFVEEKELKLTEGQLQTNSI----SLGGSNATHLRFIITSGYDHFVAVHKI 130          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1025307161|ref|XP_016382975.1| (PREDICTED: intraflagellar transport protein 25 homolog [Sinocyclocheilus rhinocerous])

HSP 1 Score: 65.4698 bits (158), Expect = 1.639e-9
Identity = 32/102 (31.37%), Postives = 55/102 (53.92%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            WISTG++PQ  ++ F     I  V + SYN+K + +   ++D A +F AV+       F   +  +  N   + V N  HLR  IL G+D F +++++S++ 
Sbjct:   37 WISTGMFPQEFIIRFPDNMNIFTVSIHSYNIKRLRIEKGTSDDADKFEAVA----DTEFEHTESSLQANDVSVNVSNTTHLRFLILSGYDHFVSVHKISVQS 134          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|957836175|ref|XP_014668252.1| (PREDICTED: intraflagellar transport protein 25 homolog [Priapulus caudatus])

HSP 1 Score: 65.855 bits (159), Expect = 1.841e-9
Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEI-GVINAQHLRLNILGGHDSFCAIYQLSIRGS 131
            W +TG++PQ  VL+FS   AI  + + +YN+K + V  S+  +A  F+ ++ + +  + G+ Q Q+I    E+     AQHLR  I   +D F A+Y++S+ GS
Sbjct:   37 WATTGLFPQEFVLSFSSPVAISNIHIYTYNLKNIMVMRSTEHEAGAFKMLTKKELERTSGSLQSQLI----EVPKATVAQHLRFIIESAYDHFVAVYRVSVDGS 136          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1024938898|ref|XP_016333258.1| (PREDICTED: intraflagellar transport protein 25 homolog [Sinocyclocheilus anshuiensis])

HSP 1 Score: 65.855 bits (159), Expect = 2.931e-9
Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            WISTG++PQ  ++ F     I  V + SYN+K + +   ++D A +F AV+       F   +  +  N   + V+N  HLR  IL G+D F +++++S++ 
Sbjct:   76 WISTGMFPQEFIIRFPDNMKIFTVSIHSYNIKRLRIEKGTSDDAEKFEAVA----DTEFEHTESSLQANDISVNVLNTTHLRFLILSGYDHFVSVHKVSVQS 173          
BLAST of intraflagellar transport protein 25 homolog vs. nr
Match: gi|1025151669|ref|XP_016416661.1| (PREDICTED: intraflagellar transport protein 25 homolog [Sinocyclocheilus rhinocerous])

HSP 1 Score: 65.855 bits (159), Expect = 2.989e-9
Identity = 32/102 (31.37%), Postives = 56/102 (54.90%), Query Frame = 0
Query:   29 WISTGIYPQSIVLTFSGLKAIDMVVLKSYNVKEMEVASSSNDQATEFRAVSIQTIPLSFGAPQEQVICNGNEIGVINAQHLRLNILGGHDSFCAIYQLSIRG 130
            WISTG++PQ  ++ F     I  V + SYN+K + +   ++D A +F AV+       F   +  +  N   + V+N  HLR  IL G+D F +++++S++ 
Sbjct:   76 WISTGMFPQEFIIRFPDNMKIFTVSIHSYNIKRLRIEKGTSDDAEKFEAVA----DTEFEHTESSLQANDISVNVLNTTHLRFLILSGYDHFVSVHKVSVQS 173          
The following BLAST results are available for this feature:
BLAST of intraflagellar transport protein 25 homolog vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000000651.653e-725.00supercontig:LSalAtl2s:LSalAtl2s100:464017:469858:-... [more]
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BLAST of intraflagellar transport protein 25 homolog vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of intraflagellar transport protein 25 homolog vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|919060983|ref|XP_013412156.1|3.593e-1437.61intraflagellar transport protein 25 homolog isofor... [more]
gi|919060977|ref|XP_013412153.1|4.772e-1437.61intraflagellar transport protein 25 homolog isofor... [more]
gi|926616282|ref|XP_013773252.1|5.627e-1333.98intraflagellar transport protein 25 homolog [Limul... [more]
gi|573877880|ref|XP_006627179.1|1.455e-1133.98PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|676424580|ref|XP_009044253.1|2.475e-1032.04hypothetical protein LOTGIDRAFT_208671 [Lottia gig... [more]
gi|1129964090|ref|XP_019741336.1|2.549e-1033.67PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|1025307161|ref|XP_016382975.1|1.639e-931.37PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|957836175|ref|XP_014668252.1|1.841e-934.62PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|1024938898|ref|XP_016333258.1|2.931e-931.37PREDICTED: intraflagellar transport protein 25 hom... [more]
gi|1025151669|ref|XP_016416661.1|2.989e-931.37PREDICTED: intraflagellar transport protein 25 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold405_size181423supercontigscaffold405_size181423:5368..7677 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold405_size181423-snap-gene-0.33-mRNA-1maker-scaffold405_size181423-snap-gene-0.33-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold405_size181423:5368..7677+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold405_size181423-snap-gene-0.33 ID=maker-scaffold405_size181423-snap-gene-0.33|Name=intraflagellar transport protein 25 homolog|organism=Tigriopus kingsejongensis|type=gene|length=2310bp|location=Sequence derived from alignment at scaffold405_size181423:5368..7677+ (Tigriopus kingsejongensis)
ATGGAGGAGATCGCTTTAGAAGACGCGGGTACGAGAGTAACCTATGCGAC CAGCCACCATGGACGATATCCTCCCGCTAATCTTCTGGAAGAGTGAGTGT CCTTAATCGTTCTATGGTCAGTACAAAAGATTCACTCCAAACGCTTCCAA TGCACTGCCAGAACCGGGACGAAACCATGGATCAGCACAGGGATCTACCC TCAGAGCATCGTTCTCACCTTCTCCGGCCTGAAAGCCATCGACATGGTGG TGCTGAAAAGCTACAATGGTACGCCAGAGCCTGAAGGTGTTCAGTCCATT TTTTGAATCATCTTTCGCCCCTTCCAGTCAAAGAGATGGAAGTGGCCAGC TCCTCCAATGACCAGGCTACCGAGTTCAGGGCAGTGAGCATTCAAACCAT CCCATTGAGCTTTGGAGCACCACAAGAGCAAGTCATTTGCAACGGCAATG AAATCGGAGGTGAGGCGCTTCCAGAAGCATTTACACTGCCTCTCTTGTCT TTTAATTGAGTCTTCATCACTCCCGTATTCCAGGACATCCTCATGATGTG AATTGACCCAACGGGAAGGAATGCGTCATTTGCAGGGGTCGGAAAACGTT ATGAAAAACTTGGAAGTGAAGTTTTCACGTTATTTACGCTTTTGGGCAAA CAGATTGACATTTTTCACACCTTTCGCGCTCTACTGGGCTTTTTCCTTTT GTGGGGGGCTTTCCGCAACTTTTTCCCTTTAAACGTATAGTCTTTGCATT TTTTGCTTGTGAACGTAATTAAGAAAAGAGGCCCCAATCGACTTAACTCT GTGGTAAAAAGTTTACAAGAGCAACACAATATTCTGCAGGGTGTGTGGAA AGCCATTCTTTGACTATTCAAAGTGAAAGATACAGTATATAATAAAGTAG GATGGCAATAATCTGCATTATGATAGGCTGTATGTAGCCTTTGAGACATG GAACACATTTCTTAACAATTAAATTATCACGTTTTAGCAAACAATCTTTT TTCTTCAAAACATTTGCAATCTTCAGATCATGTTCGAATGATTTGAACAC CTAATTTTAACGATTTTTACAACATTTGTTGCTCATTTACTTCCCCTGAT AAACCCATTTGTTGCCAATCGTTTTTGACTTTTTATTCCAACCCCTAGTC ATTAGCGACCGATTGTCAGACTCCCCCCACCGTCGAGTGTAAAGTATATG CTATGTTGCATAGCACGCATACAAACATGATTCTAAATATATCACAGGGC ACTAGATTCGATTGTCAGTCGAAGTTAATGGATACCTTCGGGGACCCAAT TCAGCCCCTTATTGCTGGGGCGACTGCATCTTTATGAGATCGCCAACGCA ATTGTAATACATCTCTACCCTGCTTTATTGAAGTTTTTATAGGTGGACGC CGTACTTGGCGAGGCAAGAGTACAAGTATACAAGTACTTGGCGAGACTAA CGTAGTAAAATAGTCGACCTCGAGGAACTTCCCAAACACGACTCAGGTCA GACACTTCTTTACAGTGATCAATGCTCAACATCTCCGATTGAACATCCTG GGCGGTCATGACAGCTTTTGCGCCATCTACCAACTCTCGATTAGGGGATC CGACGCCGACCATTCGGTCAACTTCAAGCCGTCTCACAGGTAAGACTTGA TGCAAGTACTTAGTAAGGACGACCGCCCGAAAGCCGAGTTTTACCCCTGC ACATGAGCTTTCTTGCCCATTCAGTGCCCAGTTGCCGATCCGAGACGATG TCCAGACACCGACCTCATGGCCCCTCGGAGCCGGCCCTGGAGAGGGAGAC GATCCTGGTACAACGGAAGCGCGGAAATTCGAGTTTTCCTTCGGCCAGCC GAAGCCCAAACCATCCAGTGAGCCCTTTGTGTTCAACTCGAGCCAGGAGG AGGCCGTGGCGAAAGCGGCGGAAAACTTTGGATTCCGGGTCCCAACGGCC AAGCGACGCCTGGCCACTCGGGAGGAGGAGAGCGAGGACGAGATGGAGAA CGATAAGATCGTGAACTTTGACGAGATGCCTTTACCGGCACCCACCACGC ACAATCTCGAGGGGCCATACGAGGGCGAGCTCGAGGAGAGCAACGACTCG GACTCGGAGTTGGGTGGGAACTGGAAGGAGAGCGTGTACGAGGATGAGGC GCCTCCTCAGATGCCCTTGGCTACCAATCCGGAGCTGTTCCCACTTCAAG ACGACGAGTCCGACGAGGCGGAGGAAGAGGGCAAGAGTCAGGAGGAAGAT CGCGTGCAAACCTTTGGTGAAGTGTTCAACATGCTGGATCAGGTGGCGGA TTCGGATTAG
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Synonyms
The feature 'intraflagellar transport protein 25 homolog' has the following synonyms
Synonym
Tk08177
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