t-cell surface glycoprotein cd3 epsilon chain-like, maker-scaffold490_size156733-snap-gene-0.21 (gene) Tigriopus kingsejongensis

Overview
Namet-cell surface glycoprotein cd3 epsilon chain-like
Unique Namemaker-scaffold490_size156733-snap-gene-0.21
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of t-cell surface glycoprotein cd3 epsilon chain-like vs. L. salmonis genes
Match: EMLSAG00000010968 (supercontig:LSalAtl2s:LSalAtl2s735:89985:91812:-1 gene:EMLSAG00000010968 transcript:EMLSAT00000010968 description:"maker-LSalAtl2s735-augustus-gene-1.11")

HSP 1 Score: 105.916 bits (263), Expect = 9.635e-27
Identity = 90/331 (27.19%), Postives = 141/331 (42.60%), Query Frame = 0 
Query:   25 LESTSTIMKFFWLLLVLPAALADNGARLCPDGYYYAGEDTPPGALNKSGFALEDRDVWYEEVDRSLLYSCYKAMGEK----MTFLKAMHRCWDDD------AQLVSTEDNFENIRIWNLFYRDSTRDKKNALFTSGMYMYDIEEWQWLGS------------------------AVPCGMEHEF---------------ICEARVQTVTYYAWFRGNWIDLLLGLLLVILFISLCVSLCSISSSGSASRGQAQRRGANPRRPRTTDPNS-EFTLSDLPPSYDTTVNIHQPIDQDKNQLPAKSAINGPVGNTRMEHIQNRGRELMGKLYVYR 305
            L+S    +  F+ LL        N  R CP GY YAGED+   + N+   +     V+YEEV RS +YSCYK +  K    +T+  A+  C D++      A+L+S +D+F  I+ +            + + TSG+ + +   + W  +                        A+     H+F               +CE RVQ VT+YAWF  N  +L+L   + IL I LC+       SG A R   +      RRP    P     +  D PP Y++ VN           LP K   N     +R+E I+N+G++++  + V++
Sbjct:    3 LKSGIIALTLFFTLLQFTLGNEVN-QRNCPSGYQYAGEDS---SNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCM-------SGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCA----HEGLPPKYDSNAQAP-SRLEQIKNKGKDILATVTVFK 317
The following BLAST results are available for this feature:
BLAST of t-cell surface glycoprotein cd3 epsilon chain-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000109689.635e-2727.19supercontig:LSalAtl2s:LSalAtl2s735:89985:91812:-1 ... [more]
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BLAST of t-cell surface glycoprotein cd3 epsilon chain-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of t-cell surface glycoprotein cd3 epsilon chain-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold490_size156733supercontigscaffold490_size156733:6903..8523 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold490_size156733-snap-gene-0.21-mRNA-1maker-scaffold490_size156733-snap-gene-0.21-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold490_size156733:6903..8523-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold490_size156733-snap-gene-0.21 ID=maker-scaffold490_size156733-snap-gene-0.21|Name=t-cell surface glycoprotein cd3 epsilon chain-like|organism=Tigriopus kingsejongensis|type=gene|length=1621bp|location=Sequence derived from alignment at scaffold490_size156733:6903..8523- (Tigriopus kingsejongensis)
CGTGAGAGAAATAGAACTCGGAGCCTTAATAGTATCATTGACTCTCAAAA
GGAGTCAACAAGTGCGCATATTCTAGAGTCGACATCAACCATCATGAAGT
TTTTCTGGCTCTTGCTCGTCCTGCCGGCCGCATTGGCCGACAACGGTGCC
AGACGTAAGTCATTTCAGACCATTCCAATTTGACACTCCAACATATTGCT
CTGCATTCCAAGTGAGGGCCTCCTCGAAGTTTAATCCCTGGATTAGCAAT
CCGGATCTGCGACAGCTAGCTGTTTCGGCCGCACTGGTCAATACTGGAGC
TGTCAAAATAACAACAAGAGATACTTCCAAGGTCGAGTTTTCTTTCCGAG
TGCGCCATGATCGAGTTCCAAAACGCCACTTTTAACGAATCAGTAATACC
TATAGGGATACCTATAGGGAGGGTTCTAATGAAAAGAGACGGCCGAAATC
AAAAAAACAGCAGGGCGACGTATTCCAGGTCCGTACTTTTGCGAATAGGA
TGCATACTTGGCAGCCTTCAAAACGTCGATTAACCCCGAGAAGTGGCCAT
GAAGTCCAGGAACATCTGAATAACTGTCCTTGGCCCTGGCACATTACGGT
CAAGGGCAGGACACTTTCGAATCCAGTGAATTTGGACCTGACTCATTCCA
GTTTGTCCCGATGGCTATTACTATGCTGGTGAGGACACTCCGCCCGGAGC
TCTCAACAAGTCTGGCTTCGCTCTGGAGGATCGAGACGTTTGGTATGAGG
AGGTGGATCGATCTCTATTGTACAGCTGCTACAAGGCCATGGGCGAGAAG
ATGACCTTTCTGAAGGCCATGCACCGTTGCTGGGACGACGATGCCCAATT
GGTGAGCACCGAGGACAACTTTGAAAATATCCGCATCTGGAATCTGTTCT
ACCGAGACTCCACTCGGGACAAAAAGAACGCTTTGTTCACCTCCGGAATG
TACATGTACGACATCGAGGAGTGGCAATGGCTGGGATCAGGTAATTAAGT
TGTTTAAGATTGAGCGCCGAAAAGGTCGAGATAACAAACGGGTGACACCA
TGGTCACCACATTCCAGAGAATGAGTTCAGGAGTGACTTGACGGTTTACG
ACAATATCCATGGCCCCGGGGGACCTGGAATCTTGACAACCCATCGGGAT
TGCCTTACCCTGACTCCAAATGGCCGTGGTTTCCGGCTATCAGCTGTTCC
CTGTGGCATGGAGCATGAGTTCATCTGCGAGGCCCGAGTCCAAACCGTCA
CCTATTATGCCTGGTTTAGGGGCAATTGGATTGACCTCCTCCTGGGTCTT
CTCTTGGTTATCCTCTTCATCTCCTTGTGTGTCTCCCTCTGCTCCATCTC
CTCGAGCGGATCGGCCTCTAGAGGCCAGGCCCAACGACGAGGCGCCAACC
CCCGACGACCCCGGACCACGGATCCCAATTCGGAGTTCACCTTGAGCGAT
CTGCCTCCCAGCTATGATACCACGGTCAACATCCACCAGCCCATCGACCA
GGACAAGAACCAACTCCCGGCCAAGAGCGCCATCAATGGCCCCGTGGGAA
ACACTCGAATGGAGCACATCCAAAACCGAGGCCGAGAGCTCATGGGCAAA
TTGTACGTGTATCGAAAGTAA
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Synonyms
The feature 't-cell surface glycoprotein cd3 epsilon chain-like' has the following synonyms
Synonym
Tk04107
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