pan domain-containing protein, maker-scaffold84_size396325-snap-gene-2.37 (gene) Tigriopus kingsejongensis

Overview
Namepan domain-containing protein
Unique Namemaker-scaffold84_size396325-snap-gene-2.37
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of pan domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000004525 (supercontig:LSalAtl2s:LSalAtl2s236:424917:439012:-1 gene:EMLSAG00000004525 transcript:EMLSAT00000004525 description:"maker-LSalAtl2s236-snap-gene-3.15")

HSP 1 Score: 70.4774 bits (171), Expect = 6.591e-14
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 0 
Query:  131 ECCQELRLDATGMGDFYQGDRLGLYRKYVETSSGRNVYQQVGGEQFLYYLDS---GLWMVGDTVGNDLGGILNRGSAQCPEDL-TGDWEYWGGFDEWEEDWTMEATC 233
            ECC  L++ + G+   +Q  RLG+Y + V T S R +Y+     ++L+YL +   GLWM+G   G+  GGI NR    C E++ TG W+Y  G   W++D  +   C
Sbjct:   34 ECCSGLKVSSNGLSTRFQSSRLGIYHQ-VGTLSSRPIYKNEQRNEYLFYLTTRSRGLWMIGPNPGSFNGGIANRADHPCIENIPTGSWKYADG-SGWKKDSELSFEC 138
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BLAST of pan domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000000316 (supercontig:LSalAtl2s:LSalAtl2s1047:1859:17658:-1 gene:EMLSAG00000000316 transcript:EMLSAT00000000316 description:"maker-LSalAtl2s1047-snap-gene-0.10")

HSP 1 Score: 56.225 bits (134), Expect = 5.017e-9
Identity = 34/117 (29.06%), Postives = 55/117 (47.01%), Query Frame = 0 
Query:  131 ECCQELRLDATGMGDFYQGDRLGLYRKYVETSSGRNVYQQVGGEQ-FLYYLDS-----GLWMVGDTVGNDLGGILNRGSAQCPEDLTGDWEYWGGFDEW-EEDWTMEATCQNSGGTT 240
            +CC+ + + A G     Q   LG Y K  ++ +GR  Y++ G EQ ++ +  S      LW++G  +G  + GI N G   C      +W+Y      W ++D T+   C N   TT
Sbjct:  522 QCCERVIVKANGNAKLDQSLYLGAYNKISDSYNGRFAYEREGREQLYIXFFKSQADSLNLWVIGPELGQFIAGIRNDGQETCIHKTAQEWKYASRAGVWKDDDPTLAVECFNGETTT 638
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BLAST of pan domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000005311 (supercontig:LSalAtl2s:LSalAtl2s283:445721:453151:-1 gene:EMLSAG00000005311 transcript:EMLSAT00000005311 description:"maker-LSalAtl2s283-augustus-gene-5.10")

HSP 1 Score: 49.6766 bits (117), Expect = 5.638e-7
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 0 
Query:  136 LRLDATGMGDFYQGDRLGLYRKYVETSSGRNVYQQVGGEQFLYYL-DSGLWMVGDTVGNDLGGILNRGSAQCPEDLTGDWEYWGGFDEWE 224
            L L + G+   +Q D  G+YR  ++T + R  Y+Q  GE F+YY   S  WMVG  +G+      N G A+ P + +    +W  F+ WE
Sbjct: 1119 LVLKSEGLALEHQPDAFGVYR-LIDTFNNRPAYKQDEGENFIYYNGGSKSWMVGTRIGH------NYGWARVPNNTS----HWAPFNGWE 1197
The following BLAST results are available for this feature:
BLAST of pan domain-containing protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAG000000045256.591e-1436.45supercontig:LSalAtl2s:LSalAtl2s236:424917:439012:-... [more]
EMLSAG000000003165.017e-929.06supercontig:LSalAtl2s:LSalAtl2s1047:1859:17658:-1 ... [more]
EMLSAG000000053115.638e-734.44supercontig:LSalAtl2s:LSalAtl2s283:445721:453151:-... [more]
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BLAST of pan domain-containing protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pan domain-containing protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold84_size396325supercontigscaffold84_size396325:251112..252573 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:proteolysis
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold84_size396325-snap-gene-2.37-mRNA-1maker-scaffold84_size396325-snap-gene-2.37-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold84_size396325:251112..252573+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold84_size396325-snap-gene-2.37 ID=maker-scaffold84_size396325-snap-gene-2.37|Name=pan domain-containing protein|organism=Tigriopus kingsejongensis|type=gene|length=1462bp|location=Sequence derived from alignment at scaffold84_size396325:251112..252573+ (Tigriopus kingsejongensis)
ATGATTAAATGTCGGTTCGTCGGGCAAAAGCGATCCAATCCGCGAGGAGT
CATCTCATCGTTTGTGTGGCTTCTTTCCAGCCTAATTATGCGTCTCCTCC
TGACTTTTTGCTCGATCTGGGCCTTGGCCCAGGGCGACAGTTGCAATGTG
TTCGACACTGACTTTTCCGTAAGTGAAAGCATATTCAGTACACCCTTGAA
CTCGCATGTGTGAACCCCCAAAAAATTGAATTGATCCCTCCTTCAGGGCG
TGAACGTCAACAATGGGCTGGCCGATCGCGTGGATTCTGCGAGCGAATGT
CGCTCCCTGTGCGAGTTCAATAGCGCTTGTAACTTCTGGTCTTGGGTGGG
TCCTGAGTTTCAAGAGGATCTCAATTACATTCGGAGCTGCTGGCTCAAGG
CCGACCCACCCACCGTGATTTCCAAGAAGGGCGTGGTATCTGGACCCAAA
AATTGCGCTTCATCAACCGGTATTTTTTTTTCCTGACCACCTTAAAATAA
TATGCCGTTCTGATTGGTTTGCGGGTGGTTTCAGAGTGTTGCCAGGAATT
GAGGTTGGATGCCACGGGCATGGGTGACTTCTATCAAGGGGATCGATTGG
GCTTGTACCGAAAGTACGTAGAAACGTCCAGCGGACGGAACGTCTACCAG
CAGGTGGGAGGTGAACAATTCCTGTACTACTTGGATTCTGGACTCTGGAT
GGTGGGCGATACGGTGGGAAACGATTTGGGAGGCATTCTCAACCGAGGAA
GTGCTCAGTGCCCAGAAGGTCAGATTCAAGTCCAACCGTGCTGATTGGGT
CTCTCCCAGGAAATGGAAGGTCAATCTGACATTTTGGCGTAATTCCAGAT
CTCACGGGTGATTGGGAGTACTGGGGCGGTTTTGACGAATGGGAGGAAGA
CTGGACCATGGAAGCCACCTGCCAAAACAGTGGCGGGACCACTTTCCCAC
CCAATGCCGAGACGGTAAGCTTGGAACTTTCTTGAACAACTCATTTTCAC
AAACAACGCTACAAGTGATCCATCTACAACAATTGTGTCAGTATAAACGG
AAAATCGTGCTCTATTCTCGTCTCAATTCTTAAACAGTTGACACATAATA
ATAACATATTTCTTGACGGTAAAAATCATGGGCCCGTAGTCAAAGGAAAA
AACTTGTTTAGCATTTAATTTGCAGAGGGATCCGCTTTTTATCACTGAAA
GTGCATTGAACGCATCATTATGTCAGTATCCAACGTTATGTGTCTTGTTT
CAGTGCAACTATGGGACCATTTGCGAAAGCTGCAGTCACACCTCGGAGGA
GAATGGAATCCTTTACTGTTGCTCTGTCGATTGTAACTCCGGATGGATTG
AAACTGGCACTCAAAATGGAAATGCAGTATGCCGCTGTGGACACTAAAAG
CTTCTGCCAAATGTGTTCATAATCATTAACATGTTATTACATTATCTGTG
AATATATTTGAT
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Synonyms
The feature 'pan domain-containing protein' has the following synonyms
Synonym
Tk09689
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