probable ribosome biogenesis protein nep1, snap_masked-scaffold17_size721972-processed-gene-1.3 (gene) Tigriopus kingsejongensis

Overview
Nameprobable ribosome biogenesis protein nep1
Unique Namesnap_masked-scaffold17_size721972-processed-gene-1.3
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of probable ribosome biogenesis protein nep1 vs. L. salmonis genes
Match: EMLSAG00000000678 (supercontig:LSalAtl2s:LSalAtl2s1107:261868:262668:-1 gene:EMLSAG00000000678 transcript:EMLSAT00000000678 description:"maker-LSalAtl2s1107-augustus-gene-1.40")

HSP 1 Score: 287.73 bits (735), Expect = 9.896e-99
Identity = 153/261 (58.62%), Postives = 188/261 (72.03%), Query Frame = 0
Query:    1 MGKNRRKREQSESAAAETAAKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGR-GFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADS-SVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            MGK   KR+     A E AAKK K  TP D    + SRL         +  + RLIV+L  AHLE +KS +  F LLN D+H+G +RK  R  +  RPDITHQCLLMLLDSPLNRAG LQV+I TA+NVLIE+NPQTRIPRTF RF+GLMVQLLHK+S++A+DS  +KLLKVIKNPI+DHLP G  K+ MS+S+     P +++  P +  P+C+V+GAIAKGAI  DYTD+   +G+YPLSAALTC K+TSAFE AWGVF
Sbjct:    1 MGK---KRKLEREEAEEAAAKKQK--TPLDSGIKEVSRLA--------SKKEGRLIVILYAAHLEIIKSDKKSFDLLNSDQHTGFIRKTGRQLTDCRPDITHQCLLMLLDSPLNRAGLLQVYIQTAKNVLIEINPQTRIPRTFKRFSGLMVQLLHKFSVRASDSGGLKLLKVIKNPITDHLPPGIRKICMSFSSKEVVKPADII--PKNPEPICVVIGAIAKGAINPDYTDQDLRIGNYPLSAALTCTKITSAFEEAWGVF 246          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|32699982|sp|Q9W4J5.2|NEP1_DROME (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine-N1)-methyltransferase; AltName: Full=Ribosome biogenesis protein NEP1)

HSP 1 Score: 270.396 bits (690), Expect = 2.698e-90
Identity = 131/215 (60.93%), Postives = 157/215 (73.02%), Query Frame = 0
Query:   49 TAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDS-----HVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
             A ++RLI+VL GA LETVK    F LLN D+H+GI+RK  RD  S RPDITHQCLLML DSPLNRAG LQVF+ T  NVLIE+NPQTRIPRTF RFAGLMVQLLHK+ I+A DSS +L+ VIKNPI+DH+PVGC K  MS+S        +LVP  D        PV +V+GA A G ++TDYT+E   + +YPLSAA+ C+K+ SAFE  WGV
Sbjct:   37 NATEKRLIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNRAGLLQVFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKNPITDHVPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFSISNYPLSAAIACSKICSAFEEVWGV 251          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532172|sp|Q92979.4|NEP1_HUMAN (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine(1248)-N1)-methyltransferase; AltName: Full=18S rRNA Psi1248 methyltransferase; AltName: Full=Nucleolar protein EMG1 homolog; AltName: Full=Protein C2f; AltName: Full=Ribosome biogenesis protein NEP1)

HSP 1 Score: 269.24 bits (687), Expect = 4.845e-90
Identity = 139/230 (60.43%), Postives = 162/230 (70.43%), Query Frame = 0
Query:   30 DDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            D D + P R  R+   ++     +RLIVVL GA LETVK G+ + LLN D+H  IL K  RD   ARPDITHQ LLML+DSPLNRAG LQV+IHT +NVLIEVNPQTRIPRTF RF GLMVQLLHK S++AAD   KLLKVIKNP+SDH PVGC KV  S+S        ELVP  D   P+  VVGA A G +  +YT++   + +YPLSAALTCAKLT+AFE  WGV 
Sbjct:   21 DWDALPPKR-PRLGAGNK--IGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSD---PIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI 244          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532163|sp|O35130.1|NEP1_MOUSE (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine(1248)-N1)-methyltransferase; AltName: Full=18S rRNA Psi1248 methyltransferase; AltName: Full=Nucleolar protein EMG1 homolog; AltName: Full=Protein C2f; AltName: Full=Ribosome biogenesis protein NEP1)

HSP 1 Score: 266.159 bits (679), Expect = 9.439e-89
Identity = 136/230 (59.13%), Postives = 160/230 (69.57%), Query Frame = 0
Query:   30 DDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            D +   P +L R+   S+     +RLIVVL GA LETVK G+ + LLN D H  +L K  RD    RPDITHQ LLML+DSPLNRAG LQV+IHT +NVLIEVNPQTRIPRTF RF GLMVQLLHK S++AAD   KLLKVIKNP+SDH PVGC K+  S+S        ELVP  D   PV  VVGA A G +  +YT++   + +YPLSAALTCAK+T+AFE  WGV 
Sbjct:   21 DWETTPPKKL-RLGAGSK--CGGRRLIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKIGTSFSVEDISDIRELVPSSD---PVVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKVTTAFEEVWGVI 244          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532185|sp|Q9XX15.1|NEP1_CAEEL (RecName: Full=Ribosomal RNA small subunit methyltransferase nep-1; AltName: Full=18S rRNA (pseudouridine-N1)-methyltransferase; AltName: Full=Ribosome biogenesis protein nep-1)

HSP 1 Score: 237.654 bits (605), Expect = 1.112e-77
Identity = 112/205 (54.63%), Postives = 148/205 (72.20%), Query Frame = 0
Query:   55 LIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            L VVL G  LET K G  + +L+ D+H+  LRK  +D +  RPDI HQCLL LLDSPLNRAG+L+VF  T++NVL++V+PQ RIPRTF RF GLMVQLLHK SI+AA+++ KL+ V+KNP+S+HLPVG  K+LMS++        +LV  P++  P+ L++G IA+G I  DY D    + +YPLSAALTCAK+TS  E  WG+ 
Sbjct:   28 LYVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELTMANKLV-APETDEPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIWGII 231          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532182|sp|Q9P8P7.1|NEP1_CANAX (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine-N1)-methyltransferase)

HSP 1 Score: 233.032 bits (593), Expect = 2.267e-75
Identity = 117/215 (54.42%), Postives = 146/215 (67.91%), Query Frame = 0
Query:   53 QRLIVVLAGAHLETVKSGRG------FGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGA--IQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            QRLIVVL+ A LET K   G      F LLN D+H G+LRK  RD + ARPDITHQCLL LLDSP+N+AGRLQV+I TA+ VLIEVNP  RIPRTF RF+GLMVQLLHK SI++ +S   LLKVIKNPI+DHLP  C KV +S+ A      ++ V   D +  +C+ VGA+A+G      ++ DE   L  YPLSA++ C+K     E  WG++
Sbjct:   54 QRLIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMGRDIAEARPDITHQCLLTLLDSPINKAGRLQVYIQTARGVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKVTLSFDAELK-RVQDYVTTLDENESICVFVGAMARGKDNFADEFVDEKIGLSDYPLSASVACSKFCHGCEDVWGIY 267          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532165|sp|Q06287.1|NEP1_YEAST (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine(1189)-N1)-methyltransferase; Short=18S rRNA Psi1189 methyltransferase; AltName: Full=Essential for mitotic growth protein 1; AltName: Full=Nucleolar essential protein 1)

HSP 1 Score: 228.024 bits (580), Expect = 1.072e-73
Identity = 113/215 (52.56%), Postives = 146/215 (67.91%), Query Frame = 0
Query:   53 QRLIVVLAGAHLETVK------SGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGA--IQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            +R+IVVLA A LET K       G  + LLN D+H G+L+K  RD S ARPDITHQCLL LLDSP+N+AG+LQV+I T++ +LIEVNP  RIPRTF RF+GLMVQLLHK SI++ +S  KLLKVIKNPI+DHLP  C KV +S+ A      ++ +   D    +C+ VGA+A+G      +Y DE   L +YPLSA++ C+K     E AW + 
Sbjct:   39 KRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAP-VIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL 252          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|6016598|sp|Q10107.2|NEP1_SCHPO (RecName: Full=Ribosomal RNA small subunit methyltransferase mra1; AltName: Full=18S rRNA (pseudouridine-N1)-methyltransferase; AltName: Full=Multicopy suppressor of ras1-deficiency protein)

HSP 1 Score: 224.557 bits (571), Expect = 7.832e-71
Identity = 112/212 (52.83%), Postives = 144/212 (67.92%), Query Frame = 0
Query:   53 QRLIVVLAGAHLETVKSGRG----FGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGA--IQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
            QRLIVVL  A LE  K G+     + LLN D+H GIL+K NR+ + ARPDITHQCLL LLDSPLN+AGRLQV+IHTA+ VLIEVNP  RIPRTF RF+GLMVQLLHK SI++ + + KLLKVIKNP++D+LP  C K  +S+ A  T  P + +     +  VC+ +GA+A G       + DE   +  YPLSA++ C+K   + E   G+
Sbjct:  148 QRLIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSFDAP-TVPPRKYLETLQPNQSVCIAIGAMAHGPDDFSDGWVDEKISISDYPLSASIACSKFLHSMEDFLGI 358          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532174|sp|Q96UP2.1|NEP1_CANGA (RecName: Full=Ribosomal RNA small subunit methyltransferase NEP1; AltName: Full=18S rRNA (pseudouridine-N1)-methyltransferase [[Candida] glabrata CBS 138])

HSP 1 Score: 213.386 bits (542), Expect = 3.178e-68
Identity = 112/221 (50.68%), Postives = 145/221 (65.61%), Query Frame = 0
Query:   43 NGASRPTAADQRLIVVLAGAHLETVKSG-RGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSS-VKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKG--AIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            N +S     + RL VVL  A LET  S      LLN D+H GILRK  RD + ARPDITHQCLL LLDSP+N+AG LQV+I T +NVLIEVNP  RIPRTF RF+GLMVQLLHK SI++ +SS   LL+V+KNP++ +LP  C KV +S+ A     P+E +    S   VC+ VGA+A+G  +   +Y D+   + +YPLSA++ C+K     E AW + 
Sbjct:   13 NNSSVTKKQEPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGILRKMGRDIAEARPDITHQCLLTLLDSPINKAGLLQVYILTKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLSIRSMESSNTHLLRVVKNPVTKYLPADCRKVTLSFDA-EVMRPQEYLGDKQS---VCVFVGAMARGHDSFADEYVDDKIAISNYPLSASVACSKFCHGAEDAWAII 229          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|73921208|sp|Q5JI44.1|NEP1_THEKO (RecName: Full=Ribosomal RNA small subunit methyltransferase Nep1; AltName: Full=16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.234e-18
Identity = 54/186 (29.03%), Postives = 83/186 (44.62%), Query Frame = 0
Query:   74 GLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLP-VGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
             +L+   H   L+K        RPDI H CLL  L+S  N+ G L+V++HT  + +I + P+TR+PR + RF GLM  L  K    A    ++LL++ K P+   +  +    V + +       P        SH    +VVG    G            L   PL A    +++   FE+A G+
Sbjct:   38 AILDSTYHHAALKKLPDGDRRGRPDIVHICLLNALESIANKEGFLRVYVHTRNDEVIHIKPETRLPRNYNRFLGLMESLFKK---GAVPEGLELLRIEKKPLESLIEDINPDTVFIMHEEGELIRPRSFGEILASHQNPVVVVGGFPHGDFMRPIEGTKVSLYREPLMAWTVVSEVIVNFEAALGL 220          
BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Match: gi|20532164|sp|O50087.1|NEP1_PYRHO (RecName: Full=Ribosomal RNA small subunit methyltransferase Nep1; AltName: Full=16S rRNA (pseudouridine-N1-)-methyltransferase Nep1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.171e-18
Identity = 61/224 (27.23%), Postives = 98/224 (43.75%), Query Frame = 0
Query:   53 QRLIVVLAGAHLETV-----------------KSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHL-PVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
            +RL +++A A LETV                 K      +L+   H   LR+        RPDI H CLL  LDS LN+  RL+V++HT  + +I + P+TR+PR + RF GLM  L  K    A    ++LL++ K  +++ +  +    V + +       P+      D      ++VG    G  ++        L   PL A     ++  ++E  W V
Sbjct:    5 KRLHLIIADAELETVPPEILDHPAIVNYAKRRKKRPEKIILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLRVYVHTRNDYVIYIKPETRLPRNYNRFIGLMENLFEK---GAVPEDLELLRMEKKTLNELIEEINPDVVFIMHEEGELMIPKNFGKLLDKFKKPTVIVGGFPHGDFKSKVDGVKISLYREPLMAWTIVNEVIVSYE--WEV 223          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|1325283645|ref|XP_023326523.1| (ribosomal RNA small subunit methyltransferase NEP1-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 313.153 bits (801), Expect = 4.942e-105
Identity = 146/209 (69.86%), Postives = 173/209 (82.78%), Query Frame = 0
Query:   51 ADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            +++RLI++L GAHLET K+G+ F LLN+DEH GIL +  RDFS+ARPDITHQCLLML DSPLNRAG LQV+I TA NVLIE+NP TRIPRTF RFAGLMVQLLHKYSI AA+S+VKLLKVIKNP++DHLPVG  K+LMSYSA +   P  LV  P+   P+ +VVGAIAKGAI TDYT+E+  + +YPLSAALTC+KL  AFE AWG+F
Sbjct:   28 SEKRLIIILEGAHLETCKAGKEFSLLNIDEHRGILNRAGRDFSTARPDITHQCLLMLFDSPLNRAGLLQVYIRTANNVLIEINPSTRIPRTFKRFAGLMVQLLHKYSITAAESTVKLLKVIKNPVTDHLPVGSRKLLMSYSAEKAVRPSTLV--PEGEEPIVIVVGAIAKGAIVTDYTEENISISNYPLSAALTCSKLCDAFEQAWGIF 234          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|1153814571|ref|XP_020283141.1| (ribosomal RNA small subunit methyltransferase NEP1 [Pseudomyrmex gracilis])

HSP 1 Score: 296.204 bits (757), Expect = 3.275e-98
Identity = 145/259 (55.98%), Postives = 186/259 (71.81%), Query Frame = 0
Query:    1 MGKNRRKREQSESAAAETAAKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            MG+ R+KR+ SE         +  PA         PS L+           ++RL+VVL  A LE+VK G  F LLN D+H+ IL+K NRD  + RPDITHQCLLML+DSPLNRAG LQV++HT +NVLIE+NPQTRIPRTF RFAGL+VQLLHKYS++A+D  +KLLKVIKNP+SDHLPVGC K+LMS+SA +   P E+VPP D   P+ +VVGA+A G ++TDYT+++  + +YPLS A+TC+KL +AFE  WGV 
Sbjct:    1 MGQKRKKRDDSEY--------EYDPA---------PSHLQ----IGHIKNQEKRLVVVLESAQLESVKVGSTFELLNCDDHANILKKNNRDPGTCRPDITHQCLLMLMDSPLNRAGLLQVYVHTEKNVLIEINPQTRIPRTFKRFAGLIVQLLHKYSVRASDGPMKLLKVIKNPVSDHLPVGCRKILMSFSANKVINPREIVPPED---PITIVVGAMAHGQVKTDYTEDTFSISNYPLSGAVTCSKLCTAFEEVWGVL 235          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|749780041|ref|XP_011144495.1| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Harpegnathos saltator] >gi|307201554|gb|EFN81317.1| Probable ribosome biogenesis protein NEP1 [Harpegnathos saltator])

HSP 1 Score: 295.434 bits (755), Expect = 6.522e-98
Identity = 134/208 (64.42%), Postives = 169/208 (81.25%), Query Frame = 0
Query:   52 DQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            ++RLIV+L  A LE+VK+G  F LLN D+H+ IL+KYNRD  S RPDITHQCLLML+DSPLNRAG LQV+IHT +NVLIE+NPQTRIPRTF RFAGL+VQLLHKY+I+A+D  +KLLKVIKNP+SDHLPVGC K+LMS+S+ +   P ELVP   S  P+ +V+GA+A G ++TDYT++   +  YPLSAA+TC+KL +AFE  WG+ 
Sbjct:   31 EKRLIVILEYAQLESVKNGNNFELLNCDDHTAILKKYNRDPGSCRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLIVQLLHKYNIRASDGPMKLLKVIKNPVSDHLPVGCRKILMSFSSNKVQNPRELVP---SEEPIAIVIGAMAHGQVKTDYTEDIIAISKYPLSAAITCSKLCTAFEEVWGII 235          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|769866503|ref|XP_011645237.1| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Pogonomyrmex barbatus])

HSP 1 Score: 295.049 bits (754), Expect = 7.518e-98
Identity = 133/207 (64.25%), Postives = 168/207 (81.16%), Query Frame = 0
Query:   52 DQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
            ++RLIV+L  A LE+VK G  F LLN D+H  IL+KYNRD  ++RPDI HQCLLML+DSPLNRAG LQV+IHT +NVLIE+NPQTRIPRTF RFAGLMVQLLHKYS++A+D  +KLLKVIKNP+++HLPVGC K+LMS+S+ +   P ELVP  D   P+ +VVGA+A G ++TDYT+E+  + +YPLS ALTC+KL +AFE  WG+
Sbjct:   31 EKRLIVILENAQLESVKVGNSFELLNCDDHVSILKKYNRDPGTSRPDIAHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKYSVRASDGPMKLLKVIKNPVTNHLPVGCRKILMSFSSNKVLNPRELVPTED---PIAIVVGAMAHGQVKTDYTEETFAISNYPLSGALTCSKLCTAFEEVWGI 234          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|861635185|gb|KMQ91481.1| (ribosomal rna small subunit methyltransferase nep1-like protein [Lasius niger])

HSP 1 Score: 295.049 bits (754), Expect = 9.054e-98
Identity = 134/207 (64.73%), Postives = 166/207 (80.19%), Query Frame = 0
Query:   52 DQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
            ++RLIV+L  A LE+VKSG  F LLN D+H  IL+KYNRD  + RPDI HQCLLML+DSPLNRAG LQV+IHT +NVLIE+NPQTRIPRTF RFAGLMVQLLHKY ++A+D  +KLLKVIKNPISDHLPVGC K+LMS+SA +   P E VP  D   P+ +VVGA+A G ++TDYT+++  + +YPLS A+TC+KL +AFE  WG+
Sbjct:   31 EKRLIVILENAQLESVKSGNSFELLNCDDHINILKKYNRDPGTCRPDIVHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKYGVRASDGPMKLLKVIKNPISDHLPVGCHKILMSFSANKVLNPREFVPSED---PIAIVVGAMAHGQVKTDYTEDTISISNYPLSGAVTCSKLCTAFEEVWGI 234          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|951571486|ref|XP_014483947.1| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Dinoponera quadriceps] >gi|951571489|ref|XP_014483948.1| PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Dinoponera quadriceps])

HSP 1 Score: 292.352 bits (747), Expect = 1.037e-96
Identity = 135/208 (64.90%), Postives = 166/208 (79.81%), Query Frame = 0
Query:   52 DQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            ++RLIV+L  A LE+VK+G  F LLN D+H  I +KYNRD  S RPDITHQCLLML+DSPLNRAG LQV++HT +NVLIE+NPQTRIPRTF RFAGLMVQLLHKYSI+A+D  ++LLKVIKNP+SDHLPVGC K+LMS+SA +   P EL P   S  P+ +VVGA+A G I+TDYT+++  +  YPLSAA+TC+KL  AFE  WG+ 
Sbjct:   31 EKRLIVILEQAQLESVKNGNSFELLNCDDHPAIYKKYNRDPGSCRPDITHQCLLMLMDSPLNRAGLLQVYVHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKYSIRASDGPMRLLKVIKNPVSDHLPVGCRKILMSFSADKVQHPRELAP---SEEPIAIVVGAMAHGQIKTDYTEDTISISKYPLSAAITCSKLCIAFEEVWGII 235          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|1069808360|ref|XP_018328143.1| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Agrilus planipennis])

HSP 1 Score: 291.582 bits (745), Expect = 2.185e-96
Identity = 140/240 (58.33%), Postives = 174/240 (72.50%), Query Frame = 0
Query:   20 AKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
             KK K     DD+  DP     V G  +    ++RLIV+L  A LE+VK G  F LLN D+H+  L+K NRD  S RPDI HQCLLMLLDSPLNRA  LQV++HT  N+LIE+NPQTRIPRTF RFAGLMVQLLHK+S++A+D ++KLLKVIKNP++DHLPVG  K+ MS+S+ +   P ELVP  +   PV +VVGA+A G ++ DYT+E+  + +YPLSAALTC KL SAFE AWGV 
Sbjct:    2 GKKRKLKNKEDDNEFDPVPKHFVTGHIK--NQEKRLIVILEEAQLESVKVGNSFDLLNCDDHANFLKKSNRDPGSCRPDIVHQCLLMLLDSPLNRAALLQVYVHTNHNILIEINPQTRIPRTFKRFAGLMVQLLHKFSVRASDGNMKLLKVIKNPVTDHLPVGVKKICMSFSSNKVVNPRELVPQTED--PVVVVVGAMAHGKLEIDYTEETVAISNYPLSAALTCTKLCSAFEEAWGVL 237          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|1032752921|ref|XP_003425868.2| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Nasonia vitripennis])

HSP 1 Score: 291.197 bits (744), Expect = 3.433e-96
Identity = 142/259 (54.83%), Postives = 183/259 (70.66%), Query Frame = 0
Query:    1 MGKNRRKREQSESAAAETAAKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            MGK R+ R+ ++    + A K  + A   + +                    +RLIV+L  A LE+VK G  F LLN D+H+GIL+K +R+  S+RPDITHQCLLML+DSPLNRAG LQV+IHT +NVLIEVNPQTRIPRTF RFAGLMVQLLHKYS++A+D  +KLLK+IKNPI+DHLPVGC K+ MS+SA +   P ELVP  +   P+ +VVGA+A G ++ DYT+E+  + +YPLSAA+TC+KL S FE  WGV 
Sbjct:    5 MGKKRKNRDDNDETEFDPAPKHLQTAHIKNQE--------------------KRLIVILENAQLESVKVGSSFELLNCDDHAGILKKNSREPGSSRPDITHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEVNPQTRIPRTFKRFAGLMVQLLHKYSVRASDGPMKLLKIIKNPITDHLPVGCKKLGMSFSAKKVTHPRELVPADE---PIAIVVGAMAHGQVKADYTEETFSISNYPLSAAITCSKLCSGFEEVWGVI 240          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|826500104|ref|XP_012541838.1| (PREDICTED: ribosomal RNA small subunit methyltransferase NEP1 [Monomorium pharaonis])

HSP 1 Score: 289.271 bits (739), Expect = 1.759e-95
Identity = 141/258 (54.65%), Postives = 181/258 (70.16%), Query Frame = 0
Query:    1 MGKNRRKREQSESAAAETAAKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGV 258
            MG  R+KR++S+                  D G  P  L+           ++RLIV+L  A LE+VK G  F LLN D+H+ IL+K NRD  + RPDI HQCLLML+DSPLNRAG LQV+IHT +NVLIE+NPQTRIPRTF RFAGLMVQLLHKY ++A+D  +KLLKVIKNP+++HLPVGC K+LMS+SA +   P ELVP  D   P+ +VVGA+A G ++TDYT+E+  + +YPLS A+TC+KL +AFE  WG+
Sbjct:    1 MGNKRKKRDESDYEY---------------DSG--PKHLQ----IGHIKNQEKRLIVILENAQLESVKVGNSFELLNCDDHTNILKKNNRDPGTCRPDIAHQCLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKYGVRASDGPMKLLKVIKNPVTNHLPVGCHKLLMSFSANKVLNPRELVPDKD---PIAIVVGAMAHGQVKTDYTEETFSISNYPLSGAVTCSKLCTAFEEVWGI 234          
BLAST of probable ribosome biogenesis protein nep1 vs. nr
Match: gi|817181647|ref|XP_012275371.1| (ribosomal RNA small subunit methyltransferase NEP1 isoform X2 [Orussus abietinus])

HSP 1 Score: 288.886 bits (738), Expect = 2.217e-95
Identity = 138/259 (53.28%), Postives = 183/259 (70.66%), Query Frame = 0
Query:    1 MGKNRRKREQSESAAAETAAKKAKPATPADDDGVDPSRLERVNGASRPTAADQRLIVVLAGAHLETVKSGRGFGLLNVDEHSGILRKYNRDFSSARPDITHQCLLMLLDSPLNRAGRLQVFIHTAQNVLIEVNPQTRIPRTFPRFAGLMVQLLHKYSIKAADSSVKLLKVIKNPISDHLPVGCAKVLMSYSATRTCTPEELVPPPDSHVPVCLVVGAIAKGAIQTDYTDESACLGHYPLSAALTCAKLTSAFESAWGVF 259
            MG+ R+ RE  E                 DD G DP  + +    +     ++RLI++L  A LE+VK G  F LLN D+H+ +L+KYNR+  + RPDITHQCLLML+DSPLNRAG LQV++HT +N LIE+NPQTRIPRTF RFAGLMVQLLHK+S++A++ S+KLLKVIKNP+++HLPVGC K+ MS+S+     P ELVP  +   P+ +VVGA+A G +Q DYT+++  + +YPLSAA+TC+KL SAFE  WGV 
Sbjct:    1 MGQKRKNREAKE-----------------DDYGYDP--VPKHFQVAHIKNQEKRLIIILEQAQLESVKVGNNFQLLNCDDHTSVLKKYNREPGTCRPDITHQCLLMLMDSPLNRAGLLQVYVHTERNALIEINPQTRIPRTFKRFAGLMVQLLHKFSVRASNGSMKLLKVIKNPVTNHLPVGCRKIAMSFSSKVVKNPRELVPADE---PIAIVVGAMAHGQVQADYTEDTYSISNYPLSAAITCSKLCSAFEETWGVL 237          
The following BLAST results are available for this feature:
BLAST of probable ribosome biogenesis protein nep1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000006789.896e-9958.62supercontig:LSalAtl2s:LSalAtl2s1107:261868:262668:... [more]
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BLAST of probable ribosome biogenesis protein nep1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|32699982|sp|Q9W4J5.2|NEP1_DROME2.698e-9060.93RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532172|sp|Q92979.4|NEP1_HUMAN4.845e-9060.43RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532163|sp|O35130.1|NEP1_MOUSE9.439e-8959.13RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532185|sp|Q9XX15.1|NEP1_CAEEL1.112e-7754.63RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532182|sp|Q9P8P7.1|NEP1_CANAX2.267e-7554.42RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532165|sp|Q06287.1|NEP1_YEAST1.072e-7352.56RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|6016598|sp|Q10107.2|NEP1_SCHPO7.832e-7152.83RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532174|sp|Q96UP2.1|NEP1_CANGA3.178e-6850.68RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|73921208|sp|Q5JI44.1|NEP1_THEKO3.234e-1829.03RecName: Full=Ribosomal RNA small subunit methyltr... [more]
gi|20532164|sp|O50087.1|NEP1_PYRHO8.171e-1827.23RecName: Full=Ribosomal RNA small subunit methyltr... [more]

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BLAST of probable ribosome biogenesis protein nep1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325283645|ref|XP_023326523.1|4.942e-10569.86ribosomal RNA small subunit methyltransferase NEP1... [more]
gi|1153814571|ref|XP_020283141.1|3.275e-9855.98ribosomal RNA small subunit methyltransferase NEP1... [more]
gi|749780041|ref|XP_011144495.1|6.522e-9864.42PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|769866503|ref|XP_011645237.1|7.518e-9864.25PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|861635185|gb|KMQ91481.1|9.054e-9864.73ribosomal rna small subunit methyltransferase nep1... [more]
gi|951571486|ref|XP_014483947.1|1.037e-9664.90PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|1069808360|ref|XP_018328143.1|2.185e-9658.33PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|1032752921|ref|XP_003425868.2|3.433e-9654.83PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|826500104|ref|XP_012541838.1|1.759e-9554.65PREDICTED: ribosomal RNA small subunit methyltrans... [more]
gi|817181647|ref|XP_012275371.1|2.217e-9553.28ribosomal RNA small subunit methyltransferase NEP1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold17_size721972supercontigscaffold17_size721972:111068..111847 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:methylation
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold17_size721972-processed-gene-1.3-mRNA-1snap_masked-scaffold17_size721972-processed-gene-1.3-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold17_size721972:111068..111847+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold17_size721972-processed-gene-1.3 ID=snap_masked-scaffold17_size721972-processed-gene-1.3|Name=probable ribosome biogenesis protein nep1|organism=Tigriopus kingsejongensis|type=gene|length=780bp|location=Sequence derived from alignment at scaffold17_size721972:111068..111847+ (Tigriopus kingsejongensis)
ATGGGCAAGAATCGGCGGAAGCGCGAGCAGAGCGAGAGTGCAGCGGCCGA GACAGCGGCCAAGAAAGCCAAGCCCGCCACTCCGGCCGACGACGACGGCG TGGACCCGAGCCGGCTCGAGCGGGTCAACGGCGCGAGTCGGCCCACGGCC GCAGACCAGCGGCTGATCGTGGTCTTGGCCGGCGCCCACCTCGAGACGGT CAAGTCGGGGCGCGGGTTCGGCCTGCTCAACGTGGACGAGCACTCGGGCA TCCTGCGCAAGTACAACCGGGACTTCTCCTCGGCCCGCCCCGACATCACG CACCAGTGCCTGCTCATGCTCTTGGACTCGCCGCTCAACCGGGCCGGACG CCTCCAAGTCTTCATCCACACGGCCCAGAACGTGCTGATCGAGGTCAATC CGCAGACGCGCATTCCGCGCACCTTCCCACGCTTCGCGGGCCTCATGGTC CAGCTGCTGCACAAGTACTCGATCAAGGCCGCCGACTCCTCGGTCAAGCT GCTCAAGGTCATCAAGAACCCGATCAGCGACCACCTGCCCGTGGGCTGCG CCAAGGTGCTCATGAGCTACAGCGCCACGCGCACTTGCACGCCCGAGGAG CTGGTGCCGCCGCCCGACTCGCACGTGCCCGTCTGCCTGGTGGTGGGCGC CATCGCCAAGGGCGCCATCCAGACCGACTACACGGACGAGAGCGCCTGTC TGGGCCACTATCCCCTGTCGGCCGCGCTGACCTGCGCCAAGCTCACCTCG GCCTTCGAGAGCGCGTGGGGCGTGTTCTAA
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Synonyms
The feature 'probable ribosome biogenesis protein nep1' has the following synonyms
Synonym
Tk09954
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