• Browse the L. salmonis genome in GBrowse2
• Run BLAST search
• Collections of potential errata in the annotation.
• Report a potential erratum in the genome annotation
• Gene Ontology analysis of term enrichment for specific gene-sets:
  • All developmental stages vs. previous stage
  • All tissue specifc samples vs. all other tissues
  • Several interesting contrasts

Highly Useful External Links

• The i5k workbench, a large database of draft genomes mostly insects but also some other arthropods
• Up-to-date List of RNA Sequence Analysis Training/Courses/Papers
• EMBOSS Tools at EBI (Sequence alignment, translation)
• KEGG - Kyoto Encyclopedia of genes and genomes, database containing high level functional annotations and pathways. Use with KEGG analysis report
• AmiGO 2 - Search for Gene Ontology terms, use with GO analysis report
• NCBI Blast+ at EBI
• NCBI Blast at NCBI
• Xfam, and overview site of all the famous Family sites: Pfam, Rfam, TreeFam, etc.
• Design primers: Primer3 (recommended)
• Alternative primer design tool: eprimer3 (cannot deal with ambiguity symbols except N)