EMLSAG00000000039, EMLSAG00000000039-682805 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592870200|gb|GAXK01087362.1| (TSA: Calanus finmarchicus comp1173644_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.924e-1 Identity = 24/87 (27.59%), Postives = 42/87 (48.28%), Query Frame = 0 Query: 3 QRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYIS----KDDVIFMSSLDKN-YSNWSLRMAHGTFKTCLHPFKQI 84 +R RK++ P +P +F D+ P SL+ T + L I ++ +F+S + + S+ + GTF + HPF+QI Sbjct: 943 ERGRKKLQK-FPPIPRTFPDMSSTYPDSLRGTKSNSVFLRHEGCIVGSNYENSWLFVSDVGVDQLIRSSVWVMDGTFASAPHPFRQI 1200
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784744|gb|GAXK01169824.1| (TSA: Calanus finmarchicus comp1184_c10_seq16 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 8.826e-1 Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0 Query: 18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80 L ED++ L+P+ + E TG RLLL + + M RMA G++K P Sbjct: 141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592832149|gb|GAXK01125395.1| (TSA: Calanus finmarchicus comp25636_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 3.318e+0 Identity = 19/64 (29.69%), Postives = 28/64 (43.75%), Query Frame = 0 Query: 15 SLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCL 78 S P S ++ + S TST R L A ++ D + SL + S W H + +TCL Sbjct: 354 STPTSPGPLMSMSLPSCSSTSTSGRGCLKAMTVTGVDRLTRESLPRLSSRWDTDSPHSSSRTCL 545
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784750|gb|GAXK01169818.1| (TSA: Calanus finmarchicus comp1184_c10_seq10 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 6.616e+0 Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0 Query: 18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80 L ED++ L+P+ + E TG RLLL + + M RMA G++K P Sbjct: 141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784748|gb|GAXK01169820.1| (TSA: Calanus finmarchicus comp1184_c10_seq12 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 6.984e+0 Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0 Query: 18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80 L ED++ L+P+ + E TG RLLL + + M RMA G++K P Sbjct: 141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784757|gb|GAXK01169811.1| (TSA: Calanus finmarchicus comp1184_c10_seq3 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 8.030e+0 Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 0 Query: 18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFK 75 L ED++ L+P+ + E TG RLLL + + M RMA G++K Sbjct: 141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWK 311
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784754|gb|GAXK01169814.1| (TSA: Calanus finmarchicus comp1184_c10_seq6 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 9.104e+0 Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 0 Query: 18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFK 75 L ED++ L+P+ + E TG RLLL + + M RMA G++K Sbjct: 141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWK 311
BLAST of EMLSAG00000000039 vs. L. salmonis peptides
Match: EMLSAP00000000039 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:40005:40323:-1 gene:EMLSAG00000000039 transcript:EMLSAT00000000039 description:"maker-LSalAtl2s1006-augustus-gene-0.26") HSP 1 Score: 176.022 bits (445), Expect = 2.220e-58 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 Query: 1 MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI 84 MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI Sbjct: 1 MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI 84 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000039 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000000039 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000039 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000039 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000039 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000039 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1006:40005..40323- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000039-682805 ID=EMLSAG00000000039-682805|Name=EMLSAG00000000039|organism=Lepeophtheirus salmonis|type=gene|length=319bp|location=Sequence derived from alignment at LSalAtl2s1006:40005..40323- (Lepeophtheirus salmonis)back to top Add to Basket
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