EMLSAG00000000039, EMLSAG00000000039-682805 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000039
Unique NameEMLSAG00000000039-682805
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592870200|gb|GAXK01087362.1| (TSA: Calanus finmarchicus comp1173644_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.924e-1
Identity = 24/87 (27.59%), Postives = 42/87 (48.28%), Query Frame = 0
Query:    3 QRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYIS----KDDVIFMSSLDKN-YSNWSLRMAHGTFKTCLHPFKQI 84
            +R RK++    P +P +F D+    P SL+ T +    L     I     ++  +F+S +  +     S+ +  GTF +  HPF+QI
Sbjct:  943 ERGRKKLQK-FPPIPRTFPDMSSTYPDSLRGTKSNSVFLRHEGCIVGSNYENSWLFVSDVGVDQLIRSSVWVMDGTFASAPHPFRQI 1200          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784744|gb|GAXK01169824.1| (TSA: Calanus finmarchicus comp1184_c10_seq16 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 8.826e-1
Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0
Query:   18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80
            L  ED++ L+P+ + E  TG RLLL    +     + M            RMA G++K    P
Sbjct:  141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592832149|gb|GAXK01125395.1| (TSA: Calanus finmarchicus comp25636_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.318e+0
Identity = 19/64 (29.69%), Postives = 28/64 (43.75%), Query Frame = 0
Query:   15 SLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCL 78
            S P S   ++ +   S   TST  R  L A  ++  D +   SL +  S W     H + +TCL
Sbjct:  354 STPTSPGPLMSMSLPSCSSTSTSGRGCLKAMTVTGVDRLTRESLPRLSSRWDTDSPHSSSRTCL 545          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784750|gb|GAXK01169818.1| (TSA: Calanus finmarchicus comp1184_c10_seq10 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.616e+0
Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0
Query:   18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80
            L  ED++ L+P+ + E  TG RLLL    +     + M            RMA G++K    P
Sbjct:  141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784748|gb|GAXK01169820.1| (TSA: Calanus finmarchicus comp1184_c10_seq12 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.984e+0
Identity = 19/63 (30.16%), Postives = 28/63 (44.44%), Query Frame = 0
Query:   18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHP 80
            L  ED++ L+P+ + E  TG RLLL    +     + M            RMA G++K    P
Sbjct:  141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWKELTFP 326          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784757|gb|GAXK01169811.1| (TSA: Calanus finmarchicus comp1184_c10_seq3 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 8.030e+0
Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 0
Query:   18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFK 75
            L  ED++ L+P+ + E  TG RLLL    +     + M            RMA G++K
Sbjct:  141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWK 311          
BLAST of EMLSAG00000000039 vs. C. finmarchicus
Match: gi|592784754|gb|GAXK01169814.1| (TSA: Calanus finmarchicus comp1184_c10_seq6 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 9.104e+0
Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 0
Query:   18 LSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFK 75
            L  ED++ L+P+ + E  TG RLLL    +     + M            RMA G++K
Sbjct:  141 LVMEDLVLLLPKRM-ELCTGKRLLLMERGLGSTATLIMMERPSPSDTQLARMASGSWK 311          
BLAST of EMLSAG00000000039 vs. L. salmonis peptides
Match: EMLSAP00000000039 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:40005:40323:-1 gene:EMLSAG00000000039 transcript:EMLSAT00000000039 description:"maker-LSalAtl2s1006-augustus-gene-0.26")

HSP 1 Score: 176.022 bits (445), Expect = 2.220e-58
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI 84
            MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI
Sbjct:    1 MIQRRRKRINGGLPSLPLSFEDVIQLMPQSLKETSTGVRLLLFADYISKDDVIFMSSLDKNYSNWSLRMAHGTFKTCLHPFKQI 84          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000039 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000039 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592870200|gb|GAXK01087362.1|1.924e-127.59TSA: Calanus finmarchicus comp1173644_c0_seq1 tran... [more]
gi|592784744|gb|GAXK01169824.1|8.826e-130.16TSA: Calanus finmarchicus comp1184_c10_seq16 trans... [more]
gi|592832149|gb|GAXK01125395.1|3.318e+029.69TSA: Calanus finmarchicus comp25636_c0_seq1 transc... [more]
gi|592784750|gb|GAXK01169818.1|6.616e+030.16TSA: Calanus finmarchicus comp1184_c10_seq10 trans... [more]
gi|592784748|gb|GAXK01169820.1|6.984e+030.16TSA: Calanus finmarchicus comp1184_c10_seq12 trans... [more]
gi|592784757|gb|GAXK01169811.1|8.030e+031.03TSA: Calanus finmarchicus comp1184_c10_seq3 transc... [more]
gi|592784754|gb|GAXK01169814.1|9.104e+031.03TSA: Calanus finmarchicus comp1184_c10_seq6 transc... [more]
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BLAST of EMLSAG00000000039 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000392.220e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:4000... [more]
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BLAST of EMLSAG00000000039 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000039 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000039 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000039 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:40005..40323 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-augustus-gene-0.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000039 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000039EMLSAT00000000039-695886Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:40005..40323-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000039-682805 ID=EMLSAG00000000039-682805|Name=EMLSAG00000000039|organism=Lepeophtheirus salmonis|type=gene|length=319bp|location=Sequence derived from alignment at LSalAtl2s1006:40005..40323- (Lepeophtheirus salmonis)
ATGATTCAAAGGAGGAGAAAGAGAATAAATGGAGGTCTTCCCTCATTGCC TCTCTCATTTGAAGATGTTATCCAGTTAATGCCTCAATCACTCAAGGTAA CTTATTTTACTGCAAATATTTATTTATAGATTTTTCCATCATATATTTTT TCTATTGTAGGAGACATCGACTGGGGTTAGATTGCTGCTTTTTGCAGACT ACATCAGCAAGGATGATGTTATTTTTATGTCAAGTTTGGACAAGAACTAC TCAAATTGGAGTCTAAGGATGGCTCATGGAACTTTCAAGACGTGCCTACA TCCATTCAAGCAAATATAA
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