EMLSAG00000000046, EMLSAG00000000046-682812 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000046
Unique NameEMLSAG00000000046-682812
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000046 vs. C. finmarchicus
Match: gi|592802355|gb|GAXK01152213.1| (TSA: Calanus finmarchicus comp2622489_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 63.929 bits (154), Expect = 2.099e-9
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 0 
Query:   87 SNRSIEAYYRHLERFQVPRTTSWTNLRALLXXXXXXXXXXXSVMPIGCKNPPRILKPIRLVE--HNRDRSMWLFGNPWSLTEPKVLQ 171
            ++RS+ AYY+HLERF++ RT S  NL   + S                   P ILKP++L      R++ +W++GNPWS ++P+ L+
Sbjct: 1752 THRSVNAYYKHLERFKMERTKSLNNLNKSMRS-----------------GKPAILKPLKLWRPAQGREKMVWVYGNPWSESDPRYLR 1961
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BLAST of EMLSAG00000000046 vs. L. salmonis peptides
Match: EMLSAP00000000046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:13071:17756:-1 gene:EMLSAG00000000046 transcript:EMLSAT00000000046 description:"maker-LSalAtl2s1009-augustus-gene-0.21")

HSP 1 Score: 1787.7 bits (4629), Expect = 0.000e+0
Identity = 883/883 (100.00%), Postives = 883/883 (100.00%), Query Frame = 0 
Query:    1 MXLPPLGSTLVMGSSAPSLSTNEPFVTGYNYKQSKLHDNIMSSSIENRFPNENEYESNYFPTTFCSSTLGSIPDINPTTGLRKVLGSNRSIEAYYRHLERFQVPRTTSWTNLRALLNSDKNNNFENNSVMPIGCKNPPRILKPIRLVEHNRDRSMWLFGNPWSLTEPKVLQERPLLHGEEKDSLGSIEYLNTESFVPLNATFKGIYFDLSTILNSLKKNRFHNENKWDINEKRPATTFHNQFNRYSVVPPFTPSKKLKKHKEDKLKKSGDKVGDKKLFMDSIDTIENVFINFLNDNMELNYSSKPHQSPIDTSFERDQNNNQQTHIHSDDEEMNTEPYKPELRKSTSINNLSNDIDKGITSINPETGIESTSSEEKNVSSDEHKGDKTEIQSIKTSEKEDDSNSSPVKDTGALSTEPKSDKSKVHKRRQYRRSKKENQSSSSSDKISENDNSHRNETRGKSNSFPQKKRLSRRDTENNNDQAPKISRNKSYDDGKTRMNNEKVKSKEDRKAKRTSSLPGNKTRQVVNKWYTEESESSKSNKKHRHVSNNALSPKKQNKDSHNRVSTTKNRPDLNTYKMNRADSISSTLEKNNINTKNSRKLRRKEKLNQISTDGSSEEIESNITSSKGWESKKTSVSDKEDDSTPKNSFVTSGSSDELDLLNSCEKREKDDAQEVLDNKDEINDVTTFQISPLIKSKDQDSHEEEELNKNNTESRSLEVHDMEEEASPTQEKKDGEKMRPSDDNESVPTPSSPNIRKETNSVKASWFEELANSTSKDIISSAMTDLSGKFKEHFNSKRMVLFKMKSFDETAFKKSIKNLCDEIANKKILNTTDKETTIPESLLPMAFNKRPSFNFSYQEEPKFESNGVVVNAYRTPKKTSSAL 883
            MXLPPLGSTLVMGSSAPSLSTNEPFVTGYNYKQSKLHDNIMSSSIENRFPNENEYESNYFPTTFCSSTLGSIPDINPTTGLRKVLGSNRSIEAYYRHLERFQVPRTTSWTNLRALLNSDKNNNFENNSVMPIGCKNPPRILKPIRLVEHNRDRSMWLFGNPWSLTEPKVLQERPLLHGEEKDSLGSIEYLNTESFVPLNATFKGIYFDLSTILNSLKKNRFHNENKWDINEKRPATTFHNQFNRYSVVPPFTPSKKLKKHKEDKLKKSGDKVGDKKLFMDSIDTIENVFINFLNDNMELNYSSKPHQSPIDTSFERDQNNNQQTHIHSDDEEMNTEPYKPELRKSTSINNLSNDIDKGITSINPETGIESTSSEEKNVSSDEHKGDKTEIQSIKTSEKEDDSNSSPVKDTGALSTEPKSDKSKVHKRRQYRRSKKENQSSSSSDKISENDNSHRNETRGKSNSFPQKKRLSRRDTENNNDQAPKISRNKSYDDGKTRMNNEKVKSKEDRKAKRTSSLPGNKTRQVVNKWYTEESESSKSNKKHRHVSNNALSPKKQNKDSHNRVSTTKNRPDLNTYKMNRADSISSTLEKNNINTKNSRKLRRKEKLNQISTDGSSEEIESNITSSKGWESKKTSVSDKEDDSTPKNSFVTSGSSDELDLLNSCEKREKDDAQEVLDNKDEINDVTTFQISPLIKSKDQDSHEEEELNKNNTESRSLEVHDMEEEASPTQEKKDGEKMRPSDDNESVPTPSSPNIRKETNSVKASWFEELANSTSKDIISSAMTDLSGKFKEHFNSKRMVLFKMKSFDETAFKKSIKNLCDEIANKKILNTTDKETTIPESLLPMAFNKRPSFNFSYQEEPKFESNGVVVNAYRTPKKTSSAL
Sbjct:    1 MXLPPLGSTLVMGSSAPSLSTNEPFVTGYNYKQSKLHDNIMSSSIENRFPNENEYESNYFPTTFCSSTLGSIPDINPTTGLRKVLGSNRSIEAYYRHLERFQVPRTTSWTNLRALLNSDKNNNFENNSVMPIGCKNPPRILKPIRLVEHNRDRSMWLFGNPWSLTEPKVLQERPLLHGEEKDSLGSIEYLNTESFVPLNATFKGIYFDLSTILNSLKKNRFHNENKWDINEKRPATTFHNQFNRYSVVPPFTPSKKLKKHKEDKLKKSGDKVGDKKLFMDSIDTIENVFINFLNDNMELNYSSKPHQSPIDTSFERDQNNNQQTHIHSDDEEMNTEPYKPELRKSTSINNLSNDIDKGITSINPETGIESTSSEEKNVSSDEHKGDKTEIQSIKTSEKEDDSNSSPVKDTGALSTEPKSDKSKVHKRRQYRRSKKENQSSSSSDKISENDNSHRNETRGKSNSFPQKKRLSRRDTENNNDQAPKISRNKSYDDGKTRMNNEKVKSKEDRKAKRTSSLPGNKTRQVVNKWYTEESESSKSNKKHRHVSNNALSPKKQNKDSHNRVSTTKNRPDLNTYKMNRADSISSTLEKNNINTKNSRKLRRKEKLNQISTDGSSEEIESNITSSKGWESKKTSVSDKEDDSTPKNSFVTSGSSDELDLLNSCEKREKDDAQEVLDNKDEINDVTTFQISPLIKSKDQDSHEEEELNKNNTESRSLEVHDMEEEASPTQEKKDGEKMRPSDDNESVPTPSSPNIRKETNSVKASWFEELANSTSKDIISSAMTDLSGKFKEHFNSKRMVLFKMKSFDETAFKKSIKNLCDEIANKKILNTTDKETTIPESLLPMAFNKRPSFNFSYQEEPKFESNGVVVNAYRTPKKTSSAL 883
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BLAST of EMLSAG00000000046 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold18_size714446-snap-gene-5.16 (protein:Tk08483 transcript:maker-scaffold18_size714446-snap-gene-5.16-mRNA-1 annotation:"hypothetical protein X777_10637")

HSP 1 Score: 60.8474 bits (146), Expect = 1.768e-9
Identity = 56/196 (28.57%), Postives = 86/196 (43.88%), Query Frame = 0 
Query:    1 MXLPPLGSTLVMGSSAP-----------SLSTNE-PFVTGYN--------YKQSKLHDNIMSSSIENRFPNENEYESNYFPTTFCSSTLGSIPDINPTTGLRKVLGSNRSIE-----AYYRHLERFQVPRTTSWTNLRALLNSDKNNNFENNSVMPIGCKNPPRILKPIRLVE--HNRDRSMWLFGNPWSLTEPKV 169
            M LPPL ST ++ SS             S+S  + P + G             S  H  I      +R  + +  ES+  PTT   ++L  +     +T  ++ +   RS+E     AYY+HL RF+VPRT SW +              N    P G  N   +LKP+++V      D+  W++GNPWS+ + K+
Sbjct:    1 MALPPLASTTMLSSSGSHGFNGGLSRYNSVSQGDLPMLIGAGEHGTWTNPMLMSSRHGGISRPKFMSRRQSTSTSESSK-PTTMSKTSLDMM---ELSTWDKERVSYGRSLECRVMGAYYKHLARFKVPRTESWLDF-------------NTQTPPQGRAN---VLKPLKIVPPLSKADKPKWIYGNPWSMPDKKL 176
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000046 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000046 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592802355|gb|GAXK01152213.1|2.099e-935.63TSA: Calanus finmarchicus comp2622489_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000046 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000460.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:1307... [more]
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BLAST of EMLSAG00000000046 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000046 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000046 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000046 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold18_size714446-snap-gene-5.161.768e-928.57protein:Tk08483 transcript:maker-scaffold18_size71... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1009supercontigLSalAtl2s1009:13071..17756 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1009-augustus-gene-0.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000046 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000046EMLSAT00000000046-695893Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1009:13071..17756-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000046-682812 ID=EMLSAG00000000046-682812|Name=EMLSAG00000000046|organism=Lepeophtheirus salmonis|type=gene|length=4686bp|location=Sequence derived from alignment at LSalAtl2s1009:13071..17756- (Lepeophtheirus salmonis)
ATGKCTCTTCCGCCACTTGGAAGCACCCTTGTTATGGGATCCTCTGCTCC
TTCATTATCAACAAATGAACCCTTTGTCACCGGATACAATTACAAACAGT
CCAAGCTCCATGATAATATAATGAGTAGTTCAATTGAGAATCGATTTCCG
AATGAAAATGAGTAAGTGATTCTGTATATAATATAATACTCTAAGACTTC
ATTTTATACATTGAACAAAAAGGTATGAAAGTAATTACTTTCCGACTACT
TTTTGTAGTTCAACTCTGGGCTCAATCCCTGATATTAACCCAACAACAGG
GCTAAGAAAAGTACTTGGATCCAATCGAAGCATAGAGGCCTACTATCGTC
ATTTAGAGCGTTTTCAAGTTCCAAGAACAACCTCTTGGACCAATCTTCGT
GCCCTTCTCAACAGTGATAAGAATAATAACTTTGAAAACAACTCAGTGAT
GCCAATTGGATGTAAAAATCCACCTCGGATTCTCAAACCAATTAGGTTGG
TGGAACATAACAGGGATAGGAGTATGTGGTTATTTGGGAATCCGTGGTCC
TTAACTGAGCCTAAAGTCCTCCAAGAGCGTCCTCTTCTTCACGGAGAAGA
GAAAGATTCTTTGGGGTCCATTGAGTATTTAAATACTGAAAGTTTTGTTC
CTCTTAATGCTACTTTTAAAGGAATCTACTTTGATCTATCAACCATTTTG
AATAGCTTAAAAAAAAGTAAAAAAAGGACGCTTATCCATGTTCCTTCTTT
TTGAGAAATTTGAGGCTCCCTCAAATAGCCTTTAATTCCAACAAAGGGAA
TTTTTAATCTTGTTTTTAAATAAGTAAAATCCTTTTGTGTTTTGTCCCCA
AAAAAAGAACTTTTTTTAAAATAAAAAATATATCGCTAGTATGTTCACTA
GTCCTGAATGGCGTTCCATTGCCTTTCTTAGATAAAATCACATGTAAGGT
GATTATATCAATTATAAACGCCTTGGGCTCTGTGATATTTTACAAAAGTA
TATATTGTATTGTGTCTGTCGTAATTTATTTGGTCCTGTCCAGTCTTAAG
ATTGGTCATTAACACTGTCGGTACTTCGGACTGTCAGTGCTAGAACTGAT
TAAAGTCGACTAAAATCAGCAAGGATCAAACTTTATAAGTTTTAGATCTG
ATATCCAGGACTTTACAGGCCCTATATTGAAGTGGACGGAACTGAAGTCT
TCTGTCCTAAATCAGGTCCGGCACAATAGTAAAAAAAACATAAAAGTCAA
AAGGAACCAGGGATTACCCTACCAGTGTTCTCAACATTGATTCTTCGAAT
TTAAATGACTTCAAGTGTTAAGTTGTTAATAAATTTCAACAACGATTAAA
TAAAAAATCCATACATGGTAGATATTAGCCATCTACTACAAATTAATTGG
GAAACTTTATTTTTCAATTTTTTTTTTCAAGGAAAAGTTGTAAGATAAGA
ATGAAGGTAACGACGTCTACAATGCTCAGTCTCACTCTTCCCTTCTTCTT
GCACTTCACAAAATGCCCACTTGGCATGAAATATTTTATGTGCTCGAAAA
CTACAAAATCATTTTCTACAATATTAAAGTTAACTTTGTTTTGATCTTGA
ATTTTTCACATTTTTTTAATGTTTCAGTCATAACTTTTGTTTAAAATCCT
ACTGAGTTATGCCACGACACTAGCGTCTCGCATTAGCTGACCATACATGC
CGTACGTTAAAAAGTAGCCCTATTGGTTATTCTTGTACATCACGCAGTCC
GAATAATCAAATTGTTGCGTGACTATGACGTACTTTTTAGATAGAGCATT
ATTCCGCTCAAGAAATCCTGACTACACTCCCGCTCAGTTACTAATTTCGT
AAGCGTACTCTCGCTCGTTTTTAAAGCAATGAGGGCGCTCTCGCTCAATA
AAAAATTAGTGGGGTTCATTTTTTAGGCTCGTATAGGTGTATTTAAATTT
GATAACTTTTTTAGAACACAATTAAACTCAATTTATTAGAAGTTCATATG
TGCCATACGATTTGTGACAACCATACATTATTTTCAGTGGCTTATAATAA
TCCAATTGATTGGTTTAATTAAAATATGTGTGTCAAGAAATTATTATTTG
TCTTTTGGTCTGCTTTGGACACAAAATTTTTGGCAACCACTGTCTTAGAG
GGCATGCATTTACGAGGTTTCGTGCGAAATCGTTCTGTCAAGCCTGATAA
TTAGATTGAGCTTGTAATTTTTTGAACATTTGCTTGCATGAGATTTTGTG
TAAATTTACTACATAAAAATATAAGAGAATTCGTTCACAAAAAAAGAAGG
TTTATTTTCCAAATGTATCTCCGCAAAGGAAGGAGCTGGAAGTGTCTCTA
GGGGAACGGATAGCTGAGTCTGAGMCAAGGMGATGTTGATTATTCTCCAT
TTTGGTCTAAATAGAGGTAGAAACTGAAAAAGTAATAAAATCTTAAAATG
AGCGAAAATTTGAGTGATTTTAATGCTCTTATTAAAGGATTAGCGCACTC
CGGTTTTTAATTGAAACAATGAGCGCACTACTGCGCTAATGCTTTTCCAT
TAGATAATCCTTTCCCCACTTAAAAATACATTCTGACACTGCTGAGCCCA
TTTTTGGTTGCTCCACATCCTGCATTTTGTGAAGCATTTATTTACAGTAG
TTCATCTGGGAAAAAGATTGACAAAGTAGATTCCTTTGTTAGATCGATTT
CATAATGAAAACAAATGGGACATCAACGAAAAGCGCCCTGCAACAACTTT
TCACAACCAGTTCAATCGCTACAGTGTCGTTCCACCCTTCACCCCATCCA
AAAAACTCAAAAAGCATAAAGAAGACAAACTCAAAAAATCTGGGGATAAA
GTTGGTGATAAAAAACTCTTTATGGATTCCATTGACACAATTGAAAATGT
ATTTATTAATTTTCTAAACGACAATATGGAACTTAATTATTCTTCCAAGC
CACATCAAAGTCCTATTGATACTTCCTTCGAAAGAGATCAGAATAACAAT
CAACAAACACACATCCATTCCGACGATGAAGAGATGAACACAGAGCCCTA
TAAGCCTGAATTGAGAAAAAGCACGTCCATCAACAATTTGTCAAATGATA
TTGACAAAGGAATTACATCAATAAATCCAGAAACCGGAATTGAGAGTACC
TCTTCTGAAGAAAAAAATGTTTCATCAGATGAGCACAAAGGAGACAAAAC
TGAAATACAAAGTATTAAAACTTCAGAAAAAGAAGATGATTCGAATTCTT
CCCCTGTGAAGGACACTGGAGCTTTAAGTACGGAGCCTAAATCAGATAAA
TCCAAAGTGCATAAAAGACGACAATATCGGAGATCCAAAAAGGAGAATCA
GAGTTCATCCTCCTCCGATAAAATATCTGAGAACGATAACTCACATAGAA
ATGAAACCAGAGGGAAAAGTAATTCTTTTCCACAGAAGAAACGGCTTTCC
AGACGGGACACTGAAAATAATAATGATCAAGCTCCGAAAATTTCACGAAA
TAAGTCGTATGATGATGGTAAAACACGTATGAACAATGAAAAGGTTAAAT
CAAAGGAGGATCGAAAAGCAAAGCGCACTTCCTCCCTCCCTGGAAACAAA
ACTCGTCAAGTCGTTAATAAATGGTATACAGAGGAGAGCGAATCTTCAAA
AAGCAACAAAAAACATAGACATGTGTCAAATAATGCATTAAGTCCAAAAA
AGCAAAACAAAGACTCACACAATCGCGTGTCAACTACTAAAAATAGACCT
GATTTAAATACTTATAAAATGAACAGAGCAGATTCGATATCCTCTACTCT
GGAAAAGAACAACATTAATACAAAAAACAGCAGGAAACTTCGTCGAAAGG
AAAAATTGAATCAAATATCAACGGATGGATCTTCAGAGGAGATCGAAAGT
AATATTACCTCAAGCAAAGGATGGGAATCCAAGAAGACATCTGTCTCTGA
CAAAGAAGATGATTCAACGCCTAAGAATTCATTTGTCACATCAGGATCTT
CTGATGAGCTGGATCTTCTCAACTCTTGCGAAAAGCGGGAAAAAGACGAT
GCGCAGGAGGTTCTTGACAATAAGGATGAGATCAACGATGTTACTACATT
TCAAATATCTCCTCTAATTAAGAGTAAAGATCAAGATAGTCATGAGGAGG
AAGAACTCAATAAAAATAACACCGAAAGTCGTAGCCTGGAGGTACATGAC
ATGGAAGAAGAGGCAAGTCCAACGCAGGAAAAGAAGGATGGCGAGAAAAT
GAGRCCATCCGATGATAATGAATCAGTCCCAACTCCATCATCACCAAATA
TCCGAAAAGAGACAAATAGTGTTAAGGCTTCTTGGTTTGAGGAACTTGCA
AACAGTACTTCCAAAGACATAATTTCATCAGCAATGACGGATCTTTCAGG
TAAATTTAAGGAACACTTTAACTCCAAACGAATGGTTCTATTCAAAATGA
AAAGCTTCGATGAGACGGCTTTTAAAAAATCTATTAAAAATCTCTGTGAT
GAAATAGCCAATAAGAAAATACTCAATACTACGGATAAAGAAACCACCAT
TCCTGAGAGTTTGCTTCCTATGGCCTTTAACAAGAGGCCCTCATTTAATT
TTTCATATCAGGAGGAACCTAAATTTGAATCTAATGGTGTGGTAGTAAAT
GCTTATCGTACTCCGAAAAAGACATCATCTGCATTA
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