EMLSAG00000000047, EMLSAG00000000047-682813 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000047
Unique NameEMLSAG00000000047-682813
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000047 vs. C. finmarchicus
Match: gi|592767768|gb|GAXK01186800.1| (TSA: Calanus finmarchicus comp1505433_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.574e+0
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 0
Query:    6 LLSKIESSGLQPLAEDTKIPTEKLMDILFWIWTSY---KLKNEGMSNSSYWY 54
            L+SKI SSG+QP+      P  +++D + W W  +   KL  E + N S ++
Sbjct:  220 LISKIRSSGIQPM------PDVEVLDYI-WDWKLFVLDKLTKEELRNHSNYH 354          
BLAST of EMLSAG00000000047 vs. C. finmarchicus
Match: gi|592954961|gb|GAXK01003592.1| (TSA: Calanus finmarchicus comp4366811_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.597e+0
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 0
Query:   36 IWTSYKLKNEGMSNSSYWY 54
            IW S+KL  +G+   S+WY
Sbjct:  183 IWISFKLSKQGLHQPSHWY 239          
BLAST of EMLSAG00000000047 vs. L. salmonis peptides
Match: EMLSAP00000000047 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:28271:28546:-1 gene:EMLSAG00000000047 transcript:EMLSAT00000000047 description:"maker-LSalAtl2s1009-augustus-gene-0.22")

HSP 1 Score: 136.732 bits (343), Expect = 1.892e-43
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query:    1 MESSYLLSKIESSGLQPLAEDTKIPTEKLMDILFWIWTSYKLKNEGMSNSSYWYYGAKLNSSGANATA 68
            MESSYLLSKIESSGLQPLAEDTKIPTEKLMDILFWIWTSYKLKNEGMSNSSYWYYGAKLNSSGANATA
Sbjct:    1 MESSYLLSKIESSGLQPLAEDTKIPTEKLMDILFWIWTSYKLKNEGMSNSSYWYYGAKLNSSGANATA 68          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000047 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000047 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592767768|gb|GAXK01186800.1|2.574e+034.62TSA: Calanus finmarchicus comp1505433_c0_seq1 tran... [more]
gi|592954961|gb|GAXK01003592.1|4.597e+047.37TSA: Calanus finmarchicus comp4366811_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000047 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000471.892e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:2827... [more]
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BLAST of EMLSAG00000000047 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000047 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000047 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000047 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1009supercontigLSalAtl2s1009:28271..28546 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1009-augustus-gene-0.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000047 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000047EMLSAT00000000047-695894Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1009:28271..28546-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000047-682813 ID=EMLSAG00000000047-682813|Name=EMLSAG00000000047|organism=Lepeophtheirus salmonis|type=gene|length=276bp|location=Sequence derived from alignment at LSalAtl2s1009:28271..28546- (Lepeophtheirus salmonis)
ATGGAGTCTTCATATTTGCTTTCCAAAATAGAGAGTAGTGGATTACAGCC CTTAGCAGAGGACACAAAAATACCAACTGAAAAACTTATGGACATACTTT TTTGGATTTGGACCAGCTATAAGTTAAAAAACGGTAGGGAAAAGATTCTT CCAAAAAAATAAACAAGGATTTAAATGTGTCTTAAATATATATTTTTTTT TTCAGAAGGGATGTCAAATTCAAGTTATTGGTATTATGGAGCAAAACTTA ACAGTTCTGGAGCTAATGCAACTGCA
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