EMLSAG00000000112, EMLSAG00000000112-682878 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000112
Unique NameEMLSAG00000000112-682878
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592821199|gb|GAXK01133369.1| (TSA: Calanus finmarchicus comp1333006_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.412e-1
Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 0
Query:   58 EFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQ 99
               I N  RHS+++ +    P I + P N+   S +T S+ +
Sbjct:  182 NLFIENGLRHSIMNVKTCGLPKITNAPENLTLDSGDTASICR 307          
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592821200|gb|GAXK01133368.1| (TSA: Calanus finmarchicus comp1333006_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.640e-1
Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 0
Query:   58 EFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQ 99
               I N  RHS+++ +    P I + P N+   S +T S+ +
Sbjct:  189 NLFIENGLRHSIMNVKTCGLPKITNAPENLTLDSGDTASICR 314          
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592918833|gb|GAXK01039542.1| (TSA: Calanus finmarchicus comp2977606_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.414e+0
Identity = 15/32 (46.88%), Postives = 18/32 (56.25%), Query Frame = 0
Query:   21 ISFTPLIIAVSLCFQLGITLIEAQSQSFPFNT 52
            I FT  I+AVSLCF+L   +       F FNT
Sbjct:   74 IDFTNFIVAVSLCFRLQFVI------GFWFNT 151          
BLAST of EMLSAG00000000112 vs. L. salmonis peptides
Match: EMLSAP00000000112 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:277045:280924:-1 gene:EMLSAG00000000112 transcript:EMLSAT00000000112 description:"maker-LSalAtl2s101-snap-gene-2.11")

HSP 1 Score: 224.557 bits (571), Expect = 1.192e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV 113
            MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV
Sbjct:    1 MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV 113          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000112 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000112 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592821199|gb|GAXK01133369.1|7.412e-128.57TSA: Calanus finmarchicus comp1333006_c0_seq6 tran... [more]
gi|592821200|gb|GAXK01133368.1|7.640e-128.57TSA: Calanus finmarchicus comp1333006_c0_seq5 tran... [more]
gi|592918833|gb|GAXK01039542.1|6.414e+046.88TSA: Calanus finmarchicus comp2977606_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000112 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001121.192e-76100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s101:27704... [more]
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BLAST of EMLSAG00000000112 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000112 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000112 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000112 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s101supercontigLSalAtl2s101:277045..280924 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s101-snap-gene-2.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000112 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000112EMLSAT00000000112-695959Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s101:277045..280924-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000112-682878 ID=EMLSAG00000000112-682878|Name=EMLSAG00000000112|organism=Lepeophtheirus salmonis|type=gene|length=3880bp|location=Sequence derived from alignment at LSalAtl2s101:277045..280924- (Lepeophtheirus salmonis)
ATGATTGTTTTTTATCCACGAAAAAAAGGTATATTATTTGGTTTCTGATG AAGCATTTTTGAATCAGTCGTGAAATAATATTGTATTAGTGCATTTGGAT ATTCTCCAGGGGATATTTGAGAATTGGAATTTACAACCTTGTTTACTCTC TTTTTTATAGATAGATAGCCACTCTGTGTATTTATGCATAAAGGCTACAT AAAAATTGAAGAAGAAAATAAGGAATTCAGATTTCTCAAGTCACCGAAAT AATATTGTTTGTAGATACGACAAGGAACCCTAAGGTAATTAATCAACATG CGCTTGTAACTAACAATGAGTATCATTAAGAGAGGGCCAAAGTTATAGCC TATTGTCATTACATGGCTATACATATATGTAATTAAGTCTCATGACTTGT TATCGTACATTCTTTTGCAAATCATTGACTTTGATTAACGTCAACTTTTT ATGTATGTACTTATATAAATATTCGAGCCATCCTTGGTCAAATAATTAGA GCGTAGTGCTCTCATCATATACTTAGAATAAAAGTTCAATATGACTAAAC GATCTTTTACCGTTGCTTTTCACATTAAAAGAATAATAAAACATTACAAC ACACACATATATATTATAATGTGAACCATTCTAGTTTGATTCCCAGGGGT CAAGCCCAATTTTTATCTTCTTTGAAAATATGATGATGCAATCTCCTAAT GGTTACATATGTATGCCGTATTCATATTCTAAAAGTTCATAATGGATAAC ATACATCATTTATTTTTAGAAAGAGAAAGAAAATGACTTCATTCTTGTTG TTTGACCTTGAAATACTGACTTGGTTTTTAAAATGTCCTTTTTATGTACC TATTCCTTGTTATGGTTCTTCTTCTATCATAATGATAGGTAGAATGTACA TATGTACATCAGTGGTTCTCAAACGTACTAATGGAGGCTGGCATGGGCGA TGTTATAAAAAAGATGAGAAAAAAAAAAAAGGCATAATTACCTCCGAATA TTTTGGTCAAAATTAAAGTTCCCCTCCTAAAAAATATTCATCTTTTTCAT CACGAGTGATTATCAACTTTTGTACCACAGAGACCCTATAGGCGCCATTT TATTTGAGAGGGAGTAGCTAATTTGGCCCGAATATTTGGCTCTATGATTA ATTTATAAACATATAATTTTTTTGAATTTTTAAAGACTTTTTCGCGGAAA AGACGCGTTTCTTGAGGACTTTGGTAACGTTGTGCAGTCCTGATTGAGAA TGAATGTCCTACGCCTATGACAGCTTTTTATGTGAACTTCTGTCAGTGGT ACGTGTCAGAACTTCATAAATAGGTTAAGCCTCACTGCCGTATTCACCGT TTTTAATGAGGAGAGGGCTTAATGGAAAAGCTATGGAGGAAATACCATCA ATACTATTTTTTTAAGAAATGATTGAGATGCCCTAGCCCAGAGTAATTAA GGCACTGAGCCTCTGCTATTGTATATTATTCAGTTTATCCAAATTGGATG TACAAAGTACATATCCGGAAATCTTGATATTATTTTATTAGGTGATACAG ATTGCAAGAAGTTTGAGAGCACCTGGAATACTTAATTTATGTATATACAA TATATATTGTATATATCTGGTGTGTCGACATAAATATATTTTTGAACAAA AGTCAGGAAATGGTGAAAATCCCAATTTTTTTTTAATTTTTTTTTTACTT TATATGCTCTACATACAGGCCAATATTTTGCATTCCAATTATTGGAATGA ATTTAAAACATCCAAAAAAATTAGCCCTTCCTTAGAACCTTCATTATAGT ATGAAGATAGGACCTAACCAATTTAAATAAATAAATATATCATTATTTTA TTTTGACAATGGGTTTTTGCATCTCTGTGTCCAAGTTGTGGAATCCAAGT AAATCTACTAATAGAAATTGCCCATCGTCGAAGAGTACAAATGTAATCCA GTCTAAATGTAGAAAAACATCATTCCAGTTTAATTTTGCGTTGACGGGCC ACATATATGGTTTGGAATGGATAGCTATAAGGCATTTGAATAATTACCAC GTTTGATTATATTATATTCTTGCTCGAGAGTGAATGACACCATGTGACCA GACAATTATTCTATACTCCTCTCCAGTACTTGTTATTTAGATTTTATTCT TTTTTAAGGAGTGTCAAAATATTGTATATAGTCTGCATTTTTTTCCATCT GACTATATATCTAATATGTTGCTATTACATATCTTGATTTAATCAAAGAA AGTGGGTGGTTGTTCAATAGATATTATTACTAATTCTGACTCATTTTTCA GAAATGATTCCAAACGTGGAGCAACGTCAAGGAATTTCCTTTACACCACT CATCATAGCAGTCAGTCTCTGTTTCCAATTAGGAATCACACTAATTGAGG CACAAAGCCAATCCTTTCCCTTCAACACAAACCTTCGTAATTTAAATAAT CTCAATAGCAATCCTAATAACCGAGCCTTCAATGGACGACAATCCTCGAA TCTCGTCTCAAATGATGATTTACCTCTTGACATCGGAACCATTGCTGCTG CAGGGGAAGTTTGCATTGATAAAGTTGTGACAGTAGAAGAAGTGGAGTAT GATAATGTGATTGAATGCAAGCACTCTTATAGTCAACGATGCCACGAAAC ATATAAAACAGACTACTCTCCTCAACAAGAAGAAGAGTGCGAAGAAAACT TTAAGAAAAATTGCTTCATTGAGTATAAGAAAAGAGCCTCCAAGGAAACG GTTCAGATCTGTAATACTCCCCTTGTGAAGAACTGCGACATTCAAGGCCC CCTGGAATGTAAAACAGAGTTTCAAACGCAATGTACCACGAGGTAGCTAT TACTCAATACTCATTAAGAACCAGGAATTTCTCTTTCTTTCTCGCTATGA GAAAATAATTACTCATTTAAAATTTTTAATGTTACGTAACGAGAGTTTCT TTTAGGATTTCATTCCCGCTTCTTCCTGCAATTTTATTTTATTATTATGT ATTAAATTTTCTTCCCCGAGGCTTCTCTCCTACAACATATACATATGTAA TTGTGTTTCTTAAAGGTACCACGAACATGAAGTAATAGATGATATACCAG ACTGCAAGGATGAGAATGAGGTCAAGTGTGAGGATGTTACTCAAGGTTAC ACCACAGAGCAAAAGTGTAGCAAATGGCCTGTGAAGAAATGTAAATTGAG TTCACAAACTGTCAAGAAATACTCTCCCGAAACACACTGCACAAAAGTTC CATTCGAACTTTGTGGACCAGCAGCATGCCCAACTGAGCCTGGACCCGAC GTATGCATTAGCAAAGAAGAAACGGTGCGTACATGGAACTCTGTTCCATC CATGTTCTTTCATTTTTTATTTAAACTATTTCATTTATTTTTTTAGTTTG TAGTGGATCAGCCCCAAGAGGAATGTAATCTTGAGCCTCAAAAGTCTTGC AAATTAGTTACAAAGCTCATTCCCCTTCTTAAAGCAGTGGAAAACTGTAT CGACATTCCAAAAGAGGTCTGTGTGAGACAACGTCGTAATCCAAGAACCG TCAAAGTTCCCATCATTAAGAAATGGTGCTATACTCCTAAACTCGAGACT TCTTCAGATATCAAGCCGGGATCAAGCAATCCTCGTGGTGTAACTGTCAA CCCACCCACTGAGGCTCCCCCAACTTGCTCCACATTTTGCCGACAACGAA GAAGAGACGGAGTTTGTCATCCCGAATGCAACACGCCACTCTGTGATTTC GACGGAGGTGACTGCGAGTCCTGCAATCCTTCATACCCCAAGGAATATTG TGAAGGGCTCTCCAGAAACGGAGTCTGTAATCCAGAGTGCAATACTCCAA ACTGTAATAACGATGGAGGAGATTGTATAA
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