EMLSAG00000000112, EMLSAG00000000112-682878 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592821199|gb|GAXK01133369.1| (TSA: Calanus finmarchicus comp1333006_c0_seq6 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.412e-1 Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 0 Query: 58 EFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQ 99 I N RHS+++ + P I + P N+ S +T S+ + Sbjct: 182 NLFIENGLRHSIMNVKTCGLPKITNAPENLTLDSGDTASICR 307
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592821200|gb|GAXK01133368.1| (TSA: Calanus finmarchicus comp1333006_c0_seq5 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.640e-1 Identity = 12/42 (28.57%), Postives = 21/42 (50.00%), Query Frame = 0 Query: 58 EFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQ 99 I N RHS+++ + P I + P N+ S +T S+ + Sbjct: 189 NLFIENGLRHSIMNVKTCGLPKITNAPENLTLDSGDTASICR 314
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Match: gi|592918833|gb|GAXK01039542.1| (TSA: Calanus finmarchicus comp2977606_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 6.414e+0 Identity = 15/32 (46.88%), Postives = 18/32 (56.25%), Query Frame = 0 Query: 21 ISFTPLIIAVSLCFQLGITLIEAQSQSFPFNT 52 I FT I+AVSLCF+L + F FNT Sbjct: 74 IDFTNFIVAVSLCFRLQFVI------GFWFNT 151
BLAST of EMLSAG00000000112 vs. L. salmonis peptides
Match: EMLSAP00000000112 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:277045:280924:-1 gene:EMLSAG00000000112 transcript:EMLSAT00000000112 description:"maker-LSalAtl2s101-snap-gene-2.11") HSP 1 Score: 224.557 bits (571), Expect = 1.192e-76 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 Query: 1 MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV 113 MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV Sbjct: 1 MIVFYPRKKEMIPNVEQRQGISFTPLIIAVSLCFQLGITLIEAQSQSFPFNTNLQETEFVIPNATRHSVISTEVTASPAILHTPRNIVKGSPETESVIQSAILQTVITMEEIV 113 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000112 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000112 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000000112 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000112 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000112 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000112 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000112 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s101:277045..280924- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000112-682878 ID=EMLSAG00000000112-682878|Name=EMLSAG00000000112|organism=Lepeophtheirus salmonis|type=gene|length=3880bp|location=Sequence derived from alignment at LSalAtl2s101:277045..280924- (Lepeophtheirus salmonis)back to top Add to Basket
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