EMLSAG00000000138, EMLSAG00000000138-682904 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592866340|gb|GAXK01091222.1| (TSA: Calanus finmarchicus comp261078_c2_seq3 transcribed RNA sequence) HSP 1 Score: 58.5362 bits (140), Expect = 2.699e-10 Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 0 Query: 2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDL-----KKRKNIEEE 66 ++L +D+D FD Y+LDCVKE+ + +L +YR+ S+ E+YDP D+L+G K W D+ +K +IEE+ Sbjct: 215 VSLRRDLDIFDYRYVLDCVKEDMILPNLLDYRINSHLPSILEQYDPVDVLLGYKRWKDIIEVEGEKVSDIEED 433
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592866341|gb|GAXK01091221.1| (TSA: Calanus finmarchicus comp261078_c2_seq2 transcribed RNA sequence) HSP 1 Score: 58.5362 bits (140), Expect = 5.381e-10 Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 0 Query: 2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSK 85 ++L +D D FD Y+LDCVKE+ + ++ +YR+ S+ E+YDP D+L+G K W D+ + + +E D+ D P ++S+ Sbjct: 222 VSLRRDQDMFDHRYVLDCVKEDMILPNMLDYRINSHLPSILEQYDPVDVLLGYKRWRDIPEAEGERVSDIEEDDCDDGF--PGSDSQ 476
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592851079|gb|GAXK01106465.1| (TSA: Calanus finmarchicus comp119958_c6_seq2 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.899e-7 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 Query: 2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIE 64 I ++KD D FD YI+DCV ++ L +L +YR+ S+FE Y+P DIL G W D+ K+ E Sbjct: 223 IPIKKDQDMFDYKYIIDCVDKDELLPNLKDYRITSHVPSIFENYNPVDILQGILKWSDVPKKPTGE 420
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592851080|gb|GAXK01106464.1| (TSA: Calanus finmarchicus comp119958_c6_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.901e-7 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 Query: 2 INLEKDVDNFDMTYILDCVKENNLRNDLCNYRLG---VSLFEEYDPYDILIGEKTWIDLKKRKNIE 64 I ++KD D FD YI+DCV ++ L +L +YR+ S+FE Y+P DIL G W D+ K+ E Sbjct: 223 IPIKKDQDMFDYKYIIDCVDKDELLPNLKDYRITSHVPSIFENYNPVDILQGILKWSDVPKKPTGE 420
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Match: gi|592814783|gb|GAXK01139785.1| (TSA: Calanus finmarchicus comp2411692_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 3.314e+0 Identity = 17/53 (32.08%), Postives = 25/53 (47.17%), Query Frame = 0 Query: 63 IEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCML 115 I ++F L T RKNCN+ W L+SK + +FSK C++ Sbjct: 85 IAHILQTFNHFIAVLPTIKRTLVPRKNCNSYWF-----LRSKLYSSFSKDCVM 228
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000000138 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:425:1572:-1 gene:EMLSAG00000000138 transcript:EMLSAT00000000138 description:"maker-LSalAtl2s1021-snap-gene-0.40") HSP 1 Score: 334.724 bits (857), Expect = 2.373e-118 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 Query: 1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP 165 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP Sbjct: 1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTNDP 165
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000005253 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2800:1463:11742:1 gene:EMLSAG00000005253 transcript:EMLSAT00000005253 description:"maker-LSalAtl2s2800-snap-gene-0.6") HSP 1 Score: 185.267 bits (469), Expect = 2.496e-57 Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0 Query: 1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLK 102 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYME+DNFDKALLTPSANSKNRK+ + + Q +LK Sbjct: 71 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNS--YDGQVHILK 170
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Match: EMLSAP00000005371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s28:125235:128394:-1 gene:EMLSAG00000005371 transcript:EMLSAT00000005371 description:"maker-LSalAtl2s28-augustus-gene-1.51") HSP 1 Score: 151.369 bits (381), Expect = 2.145e-42 Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 0 Query: 1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRK-NCNTLWLSQTDVLK 102 MI LEK+VD FDMTYILDCVKENNLR DL NYRLG+SLFEEYDPYDILIGEKTW+D+KK +I EE ++DNFDKA+LTPSA+SKNRK N Q D+LK Sbjct: 71 MIALEKEVDIFDMTYILDCVKENNLRTDLGNYRLGISLFEEYDPYDILIGEKTWMDIKKLNDIGEECSQLDNFDKAVLTPSASSKNRKINRPYSHDEQVDILK 173 HSP 2 Score: 89.7373 bits (221), Expect = 5.089e-21 Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0 Query: 92 TLWLSQTDVLKSKEHEAFSKTCMLQSLNYSSQTKFLATWNLRQKDSSKEPEKKERSSDSYSLSKCNNSWYTND 164 L LSQTD LKSKEHEAF+KT M QSLNYSSQTKFLATWN QKD S+EPE+KE SSD S S+ NNS T D Sbjct: 467 ALGLSQTDPLKSKEHEAFTKTRMSQSLNYSSQTKFLATWNPGQKDDSQEPEEKEHSSDLDSSSESNNSRDTED 539 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000138 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000138 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000000138 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000138 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000138 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000138 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000138 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1021:425..1572- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000138-682904 ID=EMLSAG00000000138-682904|Name=EMLSAG00000000138|organism=Lepeophtheirus salmonis|type=gene|length=1148bp|location=Sequence derived from alignment at LSalAtl2s1021:425..1572- (Lepeophtheirus salmonis)back to top Add to Basket
|