EMLSAG00000000147, EMLSAG00000000147-682913 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592865464|gb|GAXK01092098.1| (TSA: Calanus finmarchicus comp77098_c1_seq2 transcribed RNA sequence) HSP 1 Score: 73.9442 bits (180), Expect = 5.048e-16 Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 1 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGF-WSQPRT--ERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIV 95 + +L + +AS A +Q W LRTTF + PF GF + QPRT E +A G+ KIS C D F G+RY+ + H +++ I+D GYIAG QSIV Sbjct: 3 LNVLSLACLVASATA---AQKWPGLRTTFGVNPFGGFFYPQPRTIAEAEAEGSGWHKISSCGDGGKFLGNRYVEQFGH-SLILIFDDAGYIAGSQSIV 284
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592865465|gb|GAXK01092097.1| (TSA: Calanus finmarchicus comp77098_c1_seq1 transcribed RNA sequence) HSP 1 Score: 73.9442 bits (180), Expect = 6.647e-16 Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 1 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGF-WSQPRT--ERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIV 95 + +L + +AS A +Q W LRTTF + PF GF + QPRT E +A G+ KIS C D F G+RY+ + H +++ I+D GYIAG QSIV Sbjct: 3 LNVLSLACLVASATA---AQKWPGLRTTFGVNPFGGFFYPQPRTIAEAEAEGSGWHKISSCGDGGKFLGNRYVEQFGH-SLILIFDDAGYIAGSQSIV 284
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592908602|gb|GAXK01049773.1| (TSA: Calanus finmarchicus comp31018_c2_seq1 transcribed RNA sequence) HSP 1 Score: 67.3958 bits (163), Expect = 3.387e-13 Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 19 SQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIV 95 +Q W AL+TTFS+ PF GF SQPRT +A + G+ ++ C+ F G RY D ++V IYD GYIAG QS++ Sbjct: 1060 AQKWPALKTTFSINPFSGFNSQPRTSSEAEAAGWELLASCD--GKFLGHRYANPADF-SLVLIYDDAGYIAGSQSVI 1281
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592928774|gb|GAXK01029771.1| (TSA: Calanus finmarchicus comp932928_c0_seq1 transcribed RNA sequence) HSP 1 Score: 57.7658 bits (138), Expect = 4.376e-10 Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 18 GSQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQVRGI--SNDLSSQP 109 ++NW TTF F +PRT +AR G++K+S C+ F G RY + D P+ + IYD GYIAG+QS+V V+ + S +L+ QP Sbjct: 65 ATENWPNFSTTFP-----HFHLEPRTTSEAREAGWMKLSSCD--GKFLGHRYAKHSD-PSKILIYDDAGYIAGVQSVV-PVKNVHPSVNLTLQP 319
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592865463|gb|GAXK01092099.1| (TSA: Calanus finmarchicus comp77098_c1_seq3 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 2.859e-4 Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 0 Query: 54 KISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIV 95 KIS C D F G+RY+ Y +++ I+D GYIAG QSIV Sbjct: 1 KISSCGDGGKFLGNRYV-TYFGASLILIFDDAGYIAGSQSIV 123
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592764598|gb|GAXK01189970.1| (TSA: Calanus finmarchicus comp263214_c1_seq2 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 7.860e-1 Identity = 15/49 (30.61%), Postives = 23/49 (46.94%), Query Frame = 0 Query: 23 HALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIP 71 H L TT + PF WS+ E + R K +S+ ND+ + +P Sbjct: 84 HRLYTTMAYTPFPLKWSEITPEEKRRVKAAWPVSNINDLVRYENGMVLP 230
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592764594|gb|GAXK01189974.1| (TSA: Calanus finmarchicus comp263214_c1_seq6 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.304e+0 Identity = 15/49 (30.61%), Postives = 23/49 (46.94%), Query Frame = 0 Query: 23 HALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIP 71 H L TT + PF WS+ E + R K +S+ ND+ + +P Sbjct: 84 HRLYTTMAYTPFPLKWSEITPEEKRRVKAAWPVSNINDLVRYENGMVLP 230
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592764596|gb|GAXK01189972.1| (TSA: Calanus finmarchicus comp263214_c1_seq4 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.364e+0 Identity = 15/49 (30.61%), Postives = 23/49 (46.94%), Query Frame = 0 Query: 23 HALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIP 71 H L TT + PF WS+ E + R K +S+ ND+ + +P Sbjct: 84 HRLYTTMAYTPFPLKWSEITPEEKRRVKAAWPVSNINDLVRYENGMVLP 230
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Match: gi|592883730|gb|GAXK01074645.1| (TSA: Calanus finmarchicus comp2284731_c0_seq1 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 8.806e+0 Identity = 11/32 (34.38%), Postives = 18/32 (56.25%), Query Frame = 0 Query: 35 HGFWSQPRTERQARSKGYIKISDCNDINAFPG 66 H W PR + S GYI+ + +++NA+ G Sbjct: 179 HEKWETPRDSWKTTSDGYIEAFEIDNLNAYTG 274
BLAST of EMLSAG00000000147 vs. L. salmonis peptides
Match: EMLSAP00000000147 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1022:45727:49241:1 gene:EMLSAG00000000147 transcript:EMLSAT00000000147 description:"snap_masked-LSalAtl2s1022-processed-gene-0.19") HSP 1 Score: 228.794 bits (582), Expect = 2.679e-78 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 Query: 1 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQVRGISNDLSSQPY 110 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQVRGISNDLSSQPY Sbjct: 1 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQVRGISNDLSSQPY 110
BLAST of EMLSAG00000000147 vs. L. salmonis peptides
Match: EMLSAP00000009656 (pep:novel supercontig:LSalAtl2s:LSalAtl2s620:108361:109875:1 gene:EMLSAG00000009656 transcript:EMLSAT00000009656 description:"augustus_masked-LSalAtl2s620-processed-gene-1.1") HSP 1 Score: 164.081 bits (414), Expect = 7.891e-51 Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 0 Query: 1 MKLLLIFVFLASLGAVYGSQNWHALRTTFSLLPFHGFWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQ 97 MKLLL F FL SLGAV +++W++LRTTFSLLPF GFWSQPR E++ARS+GY KISDC+D +FPG+RYIPNYDHPNIV IYDVNGYIAGIQSIVDQ Sbjct: 1 MKLLLTFSFLVSLGAVNAAZDWYSLRTTFSLLPFTGFWSQPRLEKEARSEGYTKISDCSDGESFPGNRYIPNYDHPNIVLIYDVNGYIAGIQSIVDQ 97
BLAST of EMLSAG00000000147 vs. L. salmonis peptides
Match: EMLSAP00000001381 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1231:63552:64820:1 gene:EMLSAG00000001381 transcript:EMLSAT00000001381 description:"maker-LSalAtl2s1231-snap-gene-0.11") HSP 1 Score: 51.6026 bits (122), Expect = 3.154e-9 Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 0 Query: 51 GYIKISDCNDIN-AFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQ------VRGISNDLSSQPY 110 G++++ CN + +PG R+I N + NI+ IYD+NG IAGIQS+V++ R ND Q Y Sbjct: 1 GWLQVGXCNQSDRTYPGERFIRNVKYNNIILIYDINGKIAGIQSVVEKRFDNNPFRNYENDSMYQHY 67
BLAST of EMLSAG00000000147 vs. nr
Match: gi|871268489|ref|XP_012944545.1| (PREDICTED: uncharacterized protein LOC101851613 [Aplysia californica]) HSP 1 Score: 57.3806 bits (137), Expect = 1.998e-7 Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0 Query: 16 VYGSQN---WHALRTTFSLLPFHG--FWSQPRTERQARSKGYIKISDCNDINAFPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIV 95 V G QN W+ L T+ +P F PRT + A S G+ KISDC+ + G R++ + D+ +V +YDVNGYIAGIQ+ + Sbjct: 69 VRGHQNGTRWNDLSVTWGPIPSDPKYFAQMPRTVQNALSLGFKKISDCDLTVPWRGQRFVKDNDY-AVVLLYDVNGYIAGIQTSI 152
BLAST of EMLSAG00000000147 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold735_size104922-snap-gene-0.23 (protein:Tk08155 transcript:maker-scaffold735_size104922-snap-gene-0.23-mRNA-1 annotation:"protein gooseberry-like isoform x2") HSP 1 Score: 74.3294 bits (181), Expect = 4.100e-17 Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 0 Query: 21 NWHALRTTFSLLP-FHGFWSQPRTERQARSKGYIKISDCNDINA-FPGSRYIPNYDHPNIVFIYDVNGYIAGIQSIVDQVRGISND---LSSQPY 110 W LRTT++ +P GF QPRT+ + +G++++S C D N FPG R++ + D +IV ++D NG+IAGIQ+IV + + + SS PY Sbjct: 505 EWPHLRTTWAPVPGLGGFHPQPRTDAELAEEGWVQLSSCGDSNPNFPGDRFVTSADDNDIVLVFDGNGFIAGIQTIVPMDKAMDDKYFGFSSSPY 599 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000147 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000147 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 9
BLAST of EMLSAG00000000147 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000147 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000147 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000147 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 11
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BLAST of EMLSAG00000000147 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1022:45727..49241+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000147-682913 ID=EMLSAG00000000147-682913|Name=EMLSAG00000000147|organism=Lepeophtheirus salmonis|type=gene|length=3515bp|location=Sequence derived from alignment at LSalAtl2s1022:45727..49241+ (Lepeophtheirus salmonis)back to top Add to Basket
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