EMLSAG00000000242, EMLSAG00000000242-683008 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000242
Unique NameEMLSAG00000000242-683008
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000242 vs. C. finmarchicus
Match: gi|592898054|gb|GAXK01060321.1| (TSA: Calanus finmarchicus comp4353355_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.154e-1
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   33 SFYYFQQMIIIFKSPKALYCLDVAECQSS 61
            S + F   +I F SP+A+YC D+   +SS
Sbjct:  691 SGFAFPDHLIRFDSPRAMYCEDLESGRSS 777          
BLAST of EMLSAG00000000242 vs. C. finmarchicus
Match: gi|592837229|gb|GAXK01120315.1| (TSA: Calanus finmarchicus comp986912_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.508e+0
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 0
Query:   42 IIFKSPKALYCLDVAECQSSSLPY 65
            + FK  ++L+C +V +C  S +PY
Sbjct:    5 VFFKKNESLHCENVDDCLGSYMPY 76          
BLAST of EMLSAG00000000242 vs. L. salmonis peptides
Match: EMLSAP00000000242 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1033:32348:36646:1 gene:EMLSAG00000000242 transcript:EMLSAT00000000242 description:"snap-LSalAtl2s1033-processed-gene-0.45")

HSP 1 Score: 136.732 bits (343), Expect = 2.017e-43
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    1 MSFRQTRTHMIIFVTNFFNSLTLQTLIIYNIRSFYYFQQMIIIFKSPKALYCLDVAECQSSSLPYTT 67
            MSFRQTRTHMIIFVTNFFNSLTLQTLIIYNIRSFYYFQQMIIIFKSPKALYCLDVAECQSSSLPYTT
Sbjct:    1 MSFRQTRTHMIIFVTNFFNSLTLQTLIIYNIRSFYYFQQMIIIFKSPKALYCLDVAECQSSSLPYTT 67          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000242 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000242 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592898054|gb|GAXK01060321.1|6.154e-141.38TSA: Calanus finmarchicus comp4353355_c0_seq1 tran... [more]
gi|592837229|gb|GAXK01120315.1|5.508e+037.50TSA: Calanus finmarchicus comp986912_c0_seq3 trans... [more]
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BLAST of EMLSAG00000000242 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002422.017e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1033:3234... [more]
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BLAST of EMLSAG00000000242 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000242 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000242 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000242 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1033supercontigLSalAtl2s1033:32348..36646 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1033-processed-gene-0.45
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000242 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000242EMLSAT00000000242-696089Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1033:32348..36646+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000242-683008 ID=EMLSAG00000000242-683008|Name=EMLSAG00000000242|organism=Lepeophtheirus salmonis|type=gene|length=4299bp|location=Sequence derived from alignment at LSalAtl2s1033:32348..36646+ (Lepeophtheirus salmonis)
ATGGAACAACTAATCCTCGGACTTTATCTAGGCCAGCTTGCTTCTGTTCA TCTCCGTATTGAACCATCATTGAGAATGTACATTTTGAATAAAAAGTATA GAAAATTGTTTAGTTACCTAATTTTGCTTTAAAAGTTTTTAATAAAAATG GCAAAAAATAAAAATATAGAGAAGTTAAAACTGTTCTTAAAATTTTCTCC TTATTGAGTTGTTTTTTTCATAAAATTAAATTTTTTATGAAAAGCACTGG ATTTTTGAAATTATTTGAGAATATCCATTGGTTTTTGATTTTTTTTTCCA AAAATTTAATTTTTTGAGGAAGTTGCGGATTTTTGAAAAAAAAATTAAAT ATCCAATTGTATATTTGAAATTTGTTTCGAAAAAATTGTTATTTGAAATT TAATTTTTTGATTTTTTTTCACAAAAATACAAAAAATTAAATAGTATTTC TTAACTATTATATAAAATTTTTGAGAATTAGAATCGACATCGCTGATTTT TACTGGAATCGCCCTCTGTTTTTTTTAAATCGTCGTATCACTAGTTTCAA TAGATTGAAATAATCAAGGAAGACTAGAAAGACATGAAAGTGCGACTTAA AAAGCGTACGCTTTTTTACTGCCATTCAGAGGACATGTTTCAAATATSAA TTATTTTACTTTTCTATGTTGTTAGTTGTCGATCACACTCCTGCAAATTT GCTTCCACCACGGGGCTTATACGTGTTCTGCTCCTGGATGTAATTCCAGC AAAAGTAAAGATTCTAAAGTGAGCATTCATCACTTCTCAATAAAGGATTC AACCATGTTGGCAAAGTGGCTAAGGTTCATTTCGAGAGACACAAGTTATT AGAAGCCATCAGCTAGTTCAAGATTGTGTAACAAGCATTTTATATCCAAT GATTTCGTCGTTGTATCTGTGGACGCATGACCTGATAAAGGGAGATCTCT TCAGCTCTGGTAATCAGTTTATATTATTACAATTAGAAGTGTACACTTTT AATATTTTAAATCTTTCAGACGTTTGAAAGGGGATGCTATTCCATCACAA TGGCCTAATCTTCCTACCCACCTGCCTACCTATCATCKCCACCACCACCC ACCCCTAGACCAACGAGAGCCTCAACTACCAGCCAAAAATTCCAGTTACA AAACGAACGTTTCAAAGTATTAGATACTTTGTTTTTGCAAGAGACAGTCC ACTCGACAAAAAATCTCTACATGTAGCTCTCTTCTCAAACATTGCCTTCA GGATTTGTTTTGCTGAAAGTTCCAAAAGTTGCTCTGGTCAATATAATCCA TTCAGATGACAAAGGATTTGATATTTCTGCCGGCTCGAAGTGGAAGATGA CTTATCATTCAAAATATATTGTTATCTTACCCAACTCAAAACAGTTGTGT ATTTCACTGTCTAAGATTTTCTTAAAGAATCGKCTCTGTAACGGAAGCCA TCAGCTTTGGATTTTTTTTGGGATCCAATGAGCTTCAGACAGACACGGAC ACATATGATAATATTTGTAACCAATTTCTTCAATTCATTAACTCTGCAGA CATTAATCATCTACAATATTCGAAGCTTTTATTATTTTCAACAAATGATC ATCATCTTCAAGTCTCCTAAGGCTCTCTATTGTCTTGATGTGGCAGAATG TCAGTCCAGCTCTTTACCATATACAACATAAGCATTCTCTGAATGATAAC AATTCTTGTTGTTACAGTTGATTTTATTGTTACAAGGTACAATCATCATA GATGTCGATCATCCTCAGACAAGTAATGAAAGAAAATTAAAATTTATATT CCAAATGTTATATCATCTTCAAATTATAAGCTCATCACAATCATGGGAAT ATTTTCCTCCTCACAGTTCATAATGTGGACATTCTAAATCGGTGAGTAGA TATTAACCTTTCCCTACTTTAAAATGATATCTTACAATGATTCATTCATT TCAGAAACGTTTATTTGGTTGTAATGAACTACAAACATCATAGAGAGGGA TTTACTTCACCTATCTCGGTTATCTGTATTGTTGAAGGAATGTCATATTT TACATATTTAGAGAGATATCATGGACTTTAATCATCTGCAGATCTGTTTA AACAACATTAACATCCTTTCAATTACAAGAAATATTTTATCTTATTTATG TCCATCACATTCACAGGTTCTGGGTGAAATATTCATAATGGGTATATAAA CATCTCAATGACAATTATATGGTATTCAACTAATTGAAATGTCTATTAGT TTATGTCTCATAATATATTATATCCTTGCAGAAGATTTGTGAACGACATC AGTTGCCTCTACAGACAGAGGGGTTTCATCGTTATTTATATAATGCTTTA CCTATATTAAGTAGTGAAGTAATATTTCATAAATAAACGTAGGTAATGCA TCCATACGAAATCCGTGAGTATCTATCGATATTTCCATACTTTTGAGATA ATAACTTTCAACTATTTATTCATTTCAGAGAAGTTTATTTTGTTGTAATG AAGAACAATCTTAATATACGAAGGAATTAAGATTTACCCATCTATACGGT CGTGATATGAATATTTCATTCTACATGATTAAAGATATCATGGATGTCCA TCATCTCCAAACATGTATTAGTTTCATTAACAGTATCTAAATAATGATAA TTCTTGTCGTAATTGTTGATTTTGTCGTTATGAAACAATTCAATCATCAT GGATGATGTCATTTAGTTTCTTACATCTATGTACATCGTTGGGAAAGGAA TCCTATGTTCTTCAAACTTAAACATGCAAATAAAGAAAAATGACGAGTAA GAAAAAAAAATCTTCCAACCATAATATACTCAAATTATATGTTCTACACA GTCTGAAGATATGTGAACGACATCAAGTGTCTTTAAAAGCAAATGATTCT GCGTGTTACATTTCATCATGTGACCCTTACAAATCTGAGAGTATATTGAC GTTTCTATATTTTTAAGATACCAATTATAGACTCTATTTAATTGTAGAAA CAGATTTTTCCCATTTTAGTGAAGTGTAACGACCATTGACGAATAGATTC AGTTCCCCCCATCTACATGTTGAGAGTAAGAATCTTATAATCTATTTAGT GGTACCTGAAATGTTGATCATCTCTGGGTATGTCCTAGTTACATCAGTAC TCTCTGAATATTGACCATTCTCGTCGTATTGGATTAACTCAATCATGACT GATGGAAGAGGGATAAGCATGATTCATCTATATGGTCCGTCCTAGATGGA ATTGAATTATCTACACTTTTAGTAATATCATAGACGTCTATCATCTTCGG ACCTGCCAAAACTATCAGCATTCTTTTAATGATGAAAACTATCGCCGTTT ATTGGATTAGATCAATCATGACTGACGAAATGGATTAAGCATGACATAGT TATACGTTGGTAGACGGAATCGAATATTCTACATATTTAARGACGTCGTT GGTGTTGTGATAATCATCATGGATTCAGCTTCACCTATCTACATGGTGGG AGTAGGAATATCGTACTTTACATATTTAGTCGTATCTTGAATGTAGATTC TCTTTAGACTAGTCAATGTTACATCAGTACTCTCTGAATGATAGATGTAA GATAGTTATTAATTATTATTATAATTTATACCAATGAATTCTTAGATGAG GAAGCGAAGACTCTCACAACCATTCCAAACAAGTCGACCAAGTATTTTCA CTTCACGAAGGAAATTTGACTACACTGTTTAAATATAAGTTTATCAAAGT AATTGGAAAACTTTGTGTCGCCCCTGGTTGCCTTAGTGGCTAAAGGCTAA AGTATTAAATTAATGCTTTACTACAGGCTAACTAAGTCTGAAAAGAAATA TCCTCCCCTCGCCAAAAGACGTTTTCACATTTTTCCAAAGGATAAGGAAC GACGAAGTCTTTGGATAAAAGCTCTCTTTTTTAACAATTATCCATTAGGA GCCTTCAAAATATTCTGCTATATGTAACCCGTATTTTTTTATCTCCGGAC TATCCAATTCCATCAGTGGGTACGAACAACTATCGGCTTAAGGATATCTC TAAAAATATTAAACAAGGATTCTACACCAACACAGTTTCCAAACATGCCC TCCCATCTTTACGAGTCAGCCAAAATAGTGAGGAGCAAAGCATCTCTCTC TTCGACTTGGATCTTAAAAGAAAATAAACTGGACAGAGCTTGTTTACCCG ATTGGATTTATGAGTGTTTTGACTCCATTGATATTTCATAATCTTAAATT TTCGGATTCACATGGATTTTTCATCGGAGTTTGTGCCAAAGGAATGTTG
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