EMLSAG00000000262, EMLSAG00000000262-683028 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000262
Unique NameEMLSAG00000000262-683028
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 OMA:CHIRISL EMBL:AAEX03008749 Ensembl:ENSCAFT00000001160 Uniprot:F1Q444)

HSP 1 Score: 41.9726 bits (97), Expect = 6.945e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:rpl17 "ribosomal protein L17" species:7955 "Danio rerio" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 ZFIN:ZDB-GENE-030131-8585 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 CTD:6139 HOVERGEN:HBG000955 TreeFam:TF300042 HAMAP:MF_01331_A EMBL:CU467622 EMBL:BX000991 EMBL:BC055097 RefSeq:NP_001229966.1 RefSeq:NP_997925.1 RefSeq:XP_005161210.1 UniGene:Dr.18197 STRING:7955.ENSDARP00000074699 Ensembl:ENSDART00000080249 Ensembl:ENSDART00000131366 Ensembl:ENSDART00000132882 Ensembl:ENSDART00000134746 GeneID:336641 KEGG:dre:336641 InParanoid:Q7T1K0 NextBio:20811845 PRO:PR:Q7T1K0 Uniprot:Q7T1K0)

HSP 1 Score: 41.9726 bits (97), Expect = 7.386e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OMA:WKVKSGR EMBL:AC100778 HGNC:HGNC:10307 ProteinModelPortal:J3QLC8 SMR:J3QLC8 Ensembl:ENST00000580210 NextBio:35536561 ArrayExpress:J3QLC8 Uniprot:J3QLC8)

HSP 1 Score: 41.5874 bits (96), Expect = 7.906e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  115 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 145          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:Rpl17l1 "ribosomal protein L17-like 1" species:10116 "Rattus norvegicus" [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] REFSEQ:XM_001057358 Ncbi:XP_001057358)

HSP 1 Score: 41.9726 bits (97), Expect = 7.937e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHSRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9606 "Homo sapiens" [GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS] [GO:0003735 "structural constituent of ribosome" evidence=NAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation" evidence=NAS;TAS] [GO:0006413 "translational initiation" evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS] [GO:0006415 "translational termination" evidence=TAS] [GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral process" evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019058 "viral life cycle" evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA] [GO:0044267 "cellular protein metabolic process" evidence=TAS] [GO:0044822 "poly(A) RNA binding" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003735 EMBL:CH471096 UniGene:Hs.603040 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 PDB:3J3B PDBsum:3J3B HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 CTD:6139 HOVERGEN:HBG000955 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A EMBL:X53777 EMBL:AB061824 EMBL:AC100778 EMBL:AK304659 EMBL:AK311828 EMBL:BX393840 EMBL:BC000502 EMBL:BC017831 EMBL:BC066323 EMBL:BC066324 EMBL:BC106031 EMBL:AB007174 PIR:A61192 PIR:S11218 RefSeq:NP_000976.1 RefSeq:NP_001030178.1 RefSeq:NP_001186269.1 RefSeq:NP_001186270.1 RefSeq:NP_001186271.1 RefSeq:NP_001186272.1 RefSeq:NP_001186273.1 RefSeq:NP_001186274.1 RefSeq:NP_001186284.1 UniGene:Hs.293653 UniGene:Hs.374588 UniGene:Hs.485081 ProteinModelPortal:P18621 SMR:P18621 BioGrid:112059 IntAct:P18621 MINT:MINT-1393841 STRING:9606.ENSP00000389465 PhosphoSite:P18621 DMDM:132799 PaxDb:P18621 PRIDE:P18621 DNASU:6139 Ensembl:ENST00000418495 Ensembl:ENST00000579248 Ensembl:ENST00000579408 Ensembl:ENST00000580261 Ensembl:ENST00000581373 GeneID:100526842 GeneID:6139 KEGG:hsa:100526842 KEGG:hsa:6139 UCSC:uc002ldp.3 CTD:100526842 GeneCards:GC18M047009 GeneCards:GC18M047014 HGNC:HGNC:10307 HPA:HPA043724 HPA:HPA046385 MIM:603661 neXtProt:NX_P18621 PharmGKB:PA34676 InParanoid:P18621 GeneWiki:RPL17 GenomeRNAi:100526842 NextBio:23849 PRO:PR:P18621 ArrayExpress:P18621 Bgee:P18621 CleanEx:HS_RPL17 Genevestigator:P18621 Uniprot:P18621)

HSP 1 Score: 41.5874 bits (96), Expect = 8.185e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 Gene3D:3.90.470.10 SUPFAM:SSF54843 PDB:2ZKR PDBsum:2ZKR KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 CTD:6139 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A EMBL:AAEX03005538 RefSeq:XP_537346.1 ProteinModelPortal:E2R3D3 SMR:E2R3D3 PRIDE:E2R3D3 Ensembl:ENSCAFT00000030248 GeneID:480221 KEGG:cfa:480221 NextBio:20855273 Uniprot:E2R3D3)

HSP 1 Score: 41.5874 bits (96), Expect = 8.185e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:LOC609261 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A EMBL:AAEX03013621 Ensembl:ENSCAFT00000012121 OMA:SQIATRK Uniprot:J9P5U8)

HSP 1 Score: 41.5874 bits (96), Expect = 8.269e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:Rpl17 "ribosomal protein L17" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=TAS] [GO:0005840 "ribosome" evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0015934 "large ribosomal subunit" evidence=TAS] [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 RGD:1303019 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 OMA:WKVKSGR GeneTree:ENSGT00390000014873 CTD:6139 HOVERGEN:HBG000955 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A EMBL:X58389 EMBL:X60212 EMBL:BC098644 EMBL:M60478 PIR:JN0078 RefSeq:NP_958818.1 UniGene:Rn.34429 ProteinModelPortal:P24049 SMR:P24049 BioGrid:253514 IntAct:P24049 MINT:MINT-6489586 STRING:10116.ENSRNOP00000025217 PaxDb:P24049 PRIDE:P24049 Ensembl:ENSRNOT00000025217 GeneID:291434 KEGG:rno:291434 InParanoid:P24049 NextBio:632580 Genevestigator:P24049 Uniprot:P24049)

HSP 1 Score: 41.5874 bits (96), Expect = 8.355e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "60S ribosomal protein L17" species:9913 "Bos taurus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 eggNOG:COG0091 HOGENOM:HOG000205045 KO:K02880 OMA:MHIRKAN PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 EMBL:BC102600 RefSeq:NP_001029631.1 UniGene:Bt.49151 UniGene:Bt.91639 ProteinModelPortal:Q3T025 SMR:Q3T025 STRING:9913.ENSBTAP00000050222 PaxDb:Q3T025 PRIDE:Q3T025 Ensembl:ENSBTAT00000005580 Ensembl:ENSBTAT00000055065 GeneID:514046 KEGG:bta:514046 CTD:6139 HOVERGEN:HBG000955 InParanoid:Q3T025 OrthoDB:EOG70GMHF TreeFam:TF300042 NextBio:20871157 HAMAP:MF_01331_A Uniprot:Q3T025)

HSP 1 Score: 41.5874 bits (96), Expect = 8.355e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. GO
Match: - (symbol:RPL17 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA] InterPro:IPR001063 InterPro:IPR005721 InterPro:IPR018260 Pfam:PF00237 PROSITE:PS00464 GO:GO:0006412 GO:GO:0003735 GO:GO:0015934 Gene3D:3.90.470.10 SUPFAM:SSF54843 KO:K02880 PANTHER:PTHR11593 TIGRFAMs:TIGR01038 GeneTree:ENSGT00390000014873 OrthoDB:EOG70GMHF TreeFam:TF300042 HAMAP:MF_01331_A RefSeq:NP_001269206.1 RefSeq:XP_001231654.1 UniGene:Gga.4385 ProteinModelPortal:H9L213 SMR:H9L213 PRIDE:H9L213 Ensembl:ENSGALT00000035726 GeneID:426845 GeneID:770025 KEGG:gga:426845 KEGG:gga:770025 CTD:426845 Uniprot:H9L213)

HSP 1 Score: 41.5874 bits (96), Expect = 8.355e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEK 31
            M RRTY A  RIN Y+S PC IE++L +KE+
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEMILTEKEQ 155          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592785796|gb|GAXK01168772.1| (TSA: Calanus finmarchicus comp52_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 1.472e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IE+ LV+KE+AF
Sbjct:  156 MRRRTYRAHGRINPYMSSPCHIEICLVEKEQAF 254          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592851707|gb|GAXK01105837.1| (TSA: Calanus finmarchicus comp3760062_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 2.811e-6
Identity = 21/41 (51.22%), Postives = 25/41 (60.98%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTP 41
            M RRTY A  RIN Y+S PC +EV+L +KE     V  D P
Sbjct:  100 MRRRTYRAHGRINPYMSTPCHLEVILSEKEDVVSKVKDDEP 222          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592849740|gb|GAXK01107804.1| (TSA: Calanus finmarchicus comp3992595_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.735e-5
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN+Y+S PC +EVVL +KE
Sbjct:  389 RRTYRAHGRINAYMSNPCHVEVVLSEKE 472          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592873162|gb|GAXK01084400.1| (TSA: Calanus finmarchicus comp5236245_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.304e-4
Identity = 20/58 (34.48%), Postives = 32/58 (55.17%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSA 60
            RRTY A  RIN Y+S PC +E++L +K +       +   ++K+  + Q+   N  SA
Sbjct:   53 RRTYRAHGRINPYMSSPCHVELILSQKAEPVAKAEEEG--QKKIGRRRQQRLKNGASA 220          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592814455|gb|GAXK01140113.1| (TSA: Calanus finmarchicus comp8780814_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 3.190e-4
Identity = 15/28 (53.57%), Postives = 21/28 (75.00%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RIN Y+S PC +E++L +K+
Sbjct:  136 RRTYRAHGRINPYMSSPCHVELILSQKQ 219          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592935984|gb|GAXK01022569.1| (TSA: Calanus finmarchicus comp7731594_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.870e-3
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKKE 30
            RRTY A  RI  Y++ PC IE++L  +E
Sbjct:  261 RRTYRAHGRIGPYMASPCHIELILTPRE 344          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592886996|gb|GAXK01071379.1| (TSA: Calanus finmarchicus comp7339657_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 5.333e-3
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVLVKK 29
            RRTY A  RIN Y++ PC IE+++  K
Sbjct:  146 RRTYRAHGRINPYMASPCHIELIMETK 226          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592757562|gb|GAXK01196851.1| (TSA: Calanus finmarchicus comp5309723_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.066e-2
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKK 29
            M RRTY A  RIN+Y+  P  I +V V+K
Sbjct:  382 MRRRTYRAHGRINAYMRNPTHINLVCVEK 468          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592862549|gb|GAXK01095013.1| (TSA: Calanus finmarchicus comp2108352_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.697e-1
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0
Query:    3 RRTYLALRRINSYLSYPCQIEVVL 26
            RRTY A  RI+ + S PC +E++ 
Sbjct:  190 RRTYRAHGRISRFASNPCHVELIC 261          
BLAST of EMLSAG00000000262 vs. C. finmarchicus
Match: gi|592874593|gb|GAXK01082969.1| (TSA: Calanus finmarchicus comp656107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.365e+0
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 0
Query:   41 PEKEKVSIKNQKLQMNNLSAHDE 63
            PE  K  +KNQK Q  +LSA+ E
Sbjct:   72 PESYKYLLKNQKFQTQSLSANPE 140          
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000000262 (pep:novel supercontig:LSalAtl2s:LSalAtl2s103:1234959:1237071:-1 gene:EMLSAG00000000262 transcript:EMLSAT00000000262 description:"snap_masked-LSalAtl2s103-processed-gene-12.0")

HSP 1 Score: 138.658 bits (348), Expect = 2.880e-44
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67
            MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI
Sbjct:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQMNNLSAHDEDNEI 67          
BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Match: EMLSAP00000006484 (pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083:78928:-1 gene:EMLSAG00000006484 transcript:EMLSAT00000006484 description:"augustus_masked-LSalAtl2s354-processed-gene-0.5")

HSP 1 Score: 65.0846 bits (157), Expect = 8.312e-15
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225714586|gb|ACO13139.1| (60S ribosomal protein L17 [Lepeophtheirus salmonis])

HSP 1 Score: 64.6994 bits (156), Expect = 2.264e-11
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  VPSDTPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVPSDTPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225711442|gb|ACO11567.1| (60S ribosomal protein L17 [Caligus rogercresseyi])

HSP 1 Score: 59.3066 bits (142), Expect = 3.008e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVL++KE++F  VP++TPE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLLEKEQSFSKVPTETPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|225718404|gb|ACO15048.1| (60S ribosomal protein L17 [Caligus clemensi])

HSP 1 Score: 55.8398 bits (133), Expect = 6.220e-8
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPE 42
            M RRTY A  RIN Y+S PC IEVVLV+KE+AF  V  + PE
Sbjct:  125 MRRRTYRAHGRINPYMSSPCHIEVVLVEKEQAFSKVAPEAPE 166          
BLAST of EMLSAG00000000262 vs. nr
Match: gi|748384555|gb|KIH58838.1| (hypothetical protein ANCDUO_10947 [Ancylostoma duodenale])

HSP 1 Score: 50.8322 bits (120), Expect = 5.542e-7
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAFFNVPSDTPEKEKVSIKNQKLQM 55
            M RRTY A  RIN Y+S PC IEV+L +KE        D P  +K S + Q+ Q+
Sbjct:    1 MRRRTYRAHGRINPYMSSPCHIEVILTEKEDVVAKPSDDIPRAKKESKRKQRRQL 55          
BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold505_size153196-snap-gene-0.21 (protein:Tk06001 transcript:maker-scaffold505_size153196-snap-gene-0.21-mRNA-1 annotation:"60s ribosomal protein l17")

HSP 1 Score: 44.2838 bits (103), Expect = 2.496e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0
Query:    1 MIRRTYLALRRINSYLSYPCQIEVVLVKKEKAF 33
            M RRTY A  RIN Y+S PC IEV LV+KE+ F
Sbjct:  242 MRRRTYRAHGRINPYMSSPCHIEVCLVEKEQTF 274          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000262 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-6.945e-558.06symbol:RPL17 "Uncharacterized protein" species:961... [more]
-7.386e-558.06symbol:rpl17 "ribosomal protein L17" species:7955 ... [more]
-7.906e-558.06symbol:RPL17 "60S ribosomal protein L17" species:9... [more]
-7.937e-558.06symbol:Rpl17l1 "ribosomal protein L17-like 1" spec... [more]
-8.185e-558.06symbol:RPL17 "60S ribosomal protein L17" species:9... [more]
-8.185e-558.06symbol:RPL17 "Uncharacterized protein" species:961... [more]
-8.269e-558.06symbol:LOC609261 "Uncharacterized protein" species... [more]
-8.355e-558.06symbol:Rpl17 "ribosomal protein L17" species:10116... [more]
-8.355e-558.06symbol:RPL17 "60S ribosomal protein L17" species:9... [more]
-8.355e-558.06symbol:RPL17 "Uncharacterized protein" species:903... [more]

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BLAST of EMLSAG00000000262 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592785796|gb|GAXK01168772.1|1.472e-663.64TSA: Calanus finmarchicus comp52_c0_seq1 transcrib... [more]
gi|592851707|gb|GAXK01105837.1|2.811e-651.22TSA: Calanus finmarchicus comp3760062_c0_seq1 tran... [more]
gi|592849740|gb|GAXK01107804.1|1.735e-564.29TSA: Calanus finmarchicus comp3992595_c0_seq1 tran... [more]
gi|592873162|gb|GAXK01084400.1|1.304e-434.48TSA: Calanus finmarchicus comp5236245_c0_seq1 tran... [more]
gi|592814455|gb|GAXK01140113.1|3.190e-453.57TSA: Calanus finmarchicus comp8780814_c0_seq1 tran... [more]
gi|592935984|gb|GAXK01022569.1|1.870e-350.00TSA: Calanus finmarchicus comp7731594_c0_seq1 tran... [more]
gi|592886996|gb|GAXK01071379.1|5.333e-351.85TSA: Calanus finmarchicus comp7339657_c0_seq1 tran... [more]
gi|592757562|gb|GAXK01196851.1|8.066e-251.72TSA: Calanus finmarchicus comp5309723_c0_seq1 tran... [more]
gi|592862549|gb|GAXK01095013.1|3.697e-145.83TSA: Calanus finmarchicus comp2108352_c0_seq1 tran... [more]
gi|592874593|gb|GAXK01082969.1|4.365e+052.17TSA: Calanus finmarchicus comp656107_c0_seq1 trans... [more]

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BLAST of EMLSAG00000000262 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002622.880e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s103:12349... [more]
EMLSAP000000064848.312e-1571.43pep:novel supercontig:LSalAtl2s:LSalAtl2s354:78083... [more]
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BLAST of EMLSAG00000000262 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000262 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4
Match NameE-valueIdentityDescription
gi|225714586|gb|ACO13139.1|2.264e-1171.4360S ribosomal protein L17 [Lepeophtheirus salmonis... [more]
gi|225711442|gb|ACO11567.1|3.008e-961.9060S ribosomal protein L17 [Caligus rogercresseyi][more]
gi|225718404|gb|ACO15048.1|6.220e-861.9060S ribosomal protein L17 [Caligus clemensi][more]
gi|748384555|gb|KIH58838.1|5.542e-745.45hypothetical protein ANCDUO_10947 [Ancylostoma duo... [more]
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BLAST of EMLSAG00000000262 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold505_size153196-snap-gene-0.212.496e-763.64protein:Tk06001 transcript:maker-scaffold505_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s103supercontigLSalAtl2s103:1234959..1237071 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s103-processed-gene-12.0
Biotypeprotein_coding
EvidenceIEA
Note60S ribosomal protein L17 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000262 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000262EMLSAT00000000262-696109Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s103:1234959..1237071-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000262-683028 ID=EMLSAG00000000262-683028|Name=EMLSAG00000000262|organism=Lepeophtheirus salmonis|type=gene|length=2113bp|location=Sequence derived from alignment at LSalAtl2s103:1234959..1237071- (Lepeophtheirus salmonis)
ATGATACGTCGTACCTACCTTGCTCTCAGAAGAATCAATTCTTATTTGAG CTATCCCTGCCAGATCGAAGTCGTTTTGGTTAAAAAGGAGAAAGCTTTCT TCAATGTTCCCTCTGATACTCCCGAAAAGGAGAAGGTATCAATAAAGAAT CAGAAGCTTCAAGTAAATACATAGATCGGAAGATATTACATAATCCTGAT ACATTTTATTCTGTTAAATATATATCTAAAACGATTAAACAAATATCACT ATCCTTACTTTGACACCAAGCTGGACTCAATAAAGCGGTTAACTGATGAT TTATTTTTTAAGTCAATGCATAAATTTTCTCGATATTTTTTCTAAAAAGA TTGTTCATTTTATTTTAGTTTTCATTGTGAATGAAACTTTGGAAACATTT AATTGGCTTACTAAATAAGGTACCCTCTTTCCCCCCCCTTAATATCAACA TATAGAATAATATAAAAACAAACAACTCTTGTTATACAAATTTATTCATC AGACCAAGGACACCATAGATGGAGGGCAAATAAATCGATTGTGCTTGTGC TTCTTAACACAGGAATGAGTTATCACGAGATCTCCTTCAATGTCCCCAAC TCTAAGAGCATCATAACCCCTTTAATAAACTGAAAGACGAGAAAAAGAGG CTTKAAAGGKAGCCAAAAGGTAAAAAGCCCAAAAAAAAACTCCAAAGTGG TGCAGGGACAACTTGTCAAATTTCTATCCTGGCCTCTGTCTTCACCAGAT TGGAATCTGTGCCATCGAGAGAAAAGATTGGAGCACCTCCCATGTGAATG TGGATACCCTAAAGGCTGCTGTTGAGGGKTCTTGTACTTTATGAGAACAG TAGATTATATGAGGACAGTTTTGTATCTAGATATTTGCTGCCTTCATATA GTCCAAAAAAGGTAATATATGGCGACAGTAGATTATAGAAATACCTTAAC TGGTTGGAACTCTTGATGTTGTCTCCATATAGTACACTATTCCCATAAAG TCCGGCTTGAGTGAAAACAAAACTACAAACAAAGAATTATTGCGTGTTTT GTTAATAAATATTTGTATCCAACATTTGACTTGAATAATGAAGTAGAAAA TTAATATTTGTTTTTATTTTTGTTTTTTACAAATAAAATGGATTTTTAAT CGAATTGAATTGTTTACTTAAATGCAATGCCTTTTTTTTTTTTTATCGTT TTAAGTCTATTTGTATTCATCAAATGGCACTCTTAGACTTCATGTGTGAC TATACATATGGCCAATCAACATTAAAGCAAGTTAGAAGGAGTTTTCTTCT TGCCTGAGAAGATTTTCACAGTCGACAGATGACTCTTCAAGTAATGACGG ACTTTTTTGCATCGCCATAAGGGCTTTATCTTGTCGGTGAGGAGATATTT TGGAGTCCTGACAAAGCTCTTAAGGCCTATGGCATCATGAACTGATGATG ATTTTGTTCATGTTGAACTTGTCAGCCAAACGCCGCATTGATGCTCTTTG ATCTTCCTTAATGTTGGCCTCCAGGGACTTGAGAAATATTTCATCTCGCT TCTAACCATTTCCTCCACTTCCTGTATTCCTTTTGATTCCTTTTCCATTC TCCTTGGGCACTGTCCTCACAGTCACGCCGACAAAAATATTATTTTTGGA TCAACATCCGCGTGGAGAAGATCCGAAACCCTTTGCCTTTCGGATTCTTG TTAACTCATTTATCGTCAAATTTTGATCAAATCTAAACAATGCGTAATAA AAAAAGCACATGGATCGAACCCCCCCCCCCCCCACGTTCTTGAGACGTTG CCTGAACACTTAAGTAGGGCATGAAAATTCATTTGATTGATGTTGCAAAT TTCCATTTCGCACTCTGTTATGATTTTGTACTAAGTAACAATTAAATACA ATGTTTTAAACCTAAAATAAATATATTTAGATTGAATAATATTTGACCAT TTTTTAATATAGGCCAATAAGTAATAAATATTTTTAATATGGCATATTTT ACTTTTAATAATACCTATAATTTCAGATTTTGTATTAAAAATAATAATAA TATATTTTTGCAGTTTTAAAGATGAACAACTTGAGTGCACATGATGAGGA TAATGAAATATAA
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