EMLSAG00000000268, EMLSAG00000000268-683034 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000268
Unique NameEMLSAG00000000268-683034
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592849526|gb|GAXK01108018.1| (TSA: Calanus finmarchicus comp1405084_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 6.818e-1
Identity = 23/83 (27.71%), Postives = 38/83 (45.78%), Query Frame = 0 
Query:  165 EPECRKKLVCEVYSRPDDVLGEGYLGKTIKK--GMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASC-DHLERVLNGMM 244
             P C +K+VC   +  +DV G+  L K   K     +L +   +Y   +    G   A  H+ C + K+ C DHL+R  + + 
Sbjct:  391 RPNCHRKVVCH*AADQEDVAGQDTLKKIRPKR*NHFFLVFKIPKYGCKSCCS*GCTNARNHQKCFSAKSICNDHLDRAEDNLC 639
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Match: gi|592892699|gb|GAXK01065676.1| (TSA: Calanus finmarchicus comp4986_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.502e+0
Identity = 24/94 (25.53%), Postives = 44/94 (46.81%), Query Frame = 0 
Query:  145 IMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQ------------ERYNVAAEILDGKKEAEEHRVC 226
            ++  I +  ++Y   D    + EC+K+L+CEV  + ++  G   + K +K G +   Y++            + Y  A+E   G+KE EE   C
Sbjct:  373 VIQWISMLQEVYEKFD--YNDLECQKRLICEVL-KEEEYFGN--VSKKMKSGFQLARYLEVLNMPDDFRELLDEYLDASERSVGQKECEEFFQC 639
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BLAST of EMLSAG00000000268 vs. L. salmonis peptides
Match: EMLSAP00000000268 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1041:11018:12226:-1 gene:EMLSAG00000000268 transcript:EMLSAT00000000268 description:"maker-LSalAtl2s1041-augustus-gene-0.31")

HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 
Query:    1 MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN 261
            MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN
Sbjct:    1 MEKNSLMFLSVVVLIGTLSPGISAIDHHQDKVNEEELGLEPRTFDLTLGGFNSTIAITGTLIIGSLLLFSAVLYALDVYATSRIDRMLVDSFGPEIFERFSHAYASQDTDDLLAGTYEDIYEGSSRRRRRQASEETKITKSESRIMGLIHLAYDIYNAADESLREPECRKKLVCEVYSRPDDVLGEGYLGKTIKKGMEYLPYIQERYNVAAEILDGKKEAEEHRVCETKKASCDHLERVLNGMMKENAFLNHKGHGEQVQN 261
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000268 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592849526|gb|GAXK01108018.1|6.818e-127.71TSA: Calanus finmarchicus comp1405084_c0_seq1 tran... [more]
gi|592892699|gb|GAXK01065676.1|9.502e+025.53TSA: Calanus finmarchicus comp4986_c0_seq1 transcr... [more]

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BLAST of EMLSAG00000000268 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002680.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1041:1101... [more]
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BLAST of EMLSAG00000000268 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000268 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1041supercontigLSalAtl2s1041:11018..12226 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1041-augustus-gene-0.31
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000268 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000268EMLSAT00000000268-696115Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1041:11018..12226-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000268-683034 ID=EMLSAG00000000268-683034|Name=EMLSAG00000000268|organism=Lepeophtheirus salmonis|type=gene|length=1209bp|location=Sequence derived from alignment at LSalAtl2s1041:11018..12226- (Lepeophtheirus salmonis)
ATGGAAAAGAATAGTCTAATGTTCTTATCCGTCGTAGTCCTTATAGGCAC
CCTCTCTCCTGGGATCAGCGCAATTGACCATCATCAGGATAAAGTGAATG
AGGAGGAATTGGGTTTGGAGCCACGAACTTTTGATTTGACTCTCGGAGGT
TTCAACTCAACCATAGCAATCACTGGTACTCTCATCATTGGAAGTTTACT
CCTTTTCTCAGCTGTTCTCTATGCCTTGGATGTTTATGCCACATCCCGCA
TTGATAGAATGCTTGTGGACTCCTTTGGTCCTGAGATTTTTGAACGGTTC
TCCCATGCCTATGCATCCCAAGATACGTAAGTACTCTTGAATCATTGATA
TAGAATAAAACCCCTTGGAGTCAGACTAATGGTGACCATTTTAATTATTC
ATTGAGAATTACTAACTGTGCATTTCTTTGCATAATTTAATAGTCATCTG
TTGAATTAATTTCAGTCTACATAAGACTACAAATGTCGTTAAACTTTACT
TAGAGGCATGCTGTGTAACCTTATGTACGTATGTTCTGTATTAATACTGA
AAAGTTAATTATAAAATATATTTTCGCCAAAAATTTCCACATAATTAACA
ACAAATAATGAAAGTTATTACTAACACATATGCCATTTGTACTCAAAAAT
TTCTCTATTTGGCTTTGAGCAATTATTTCACTTTCATTCAAAATGAAAAT
ATATAATAGCTTTTGTTCATTGATTAATCTTTTTTGTCATATTTTACAGG
GATGACCTTTTAGCAGGCACCTATGAAGACATTTATGAAGGATCTTCTCG
ACGCCGCCGCCGACAAGCCTCAGAAGAAACAAAAATAACCAAGAGCGAGA
GCAGAATAATGGGACTCATCCATCTTGCCTATGACATCTATAACGCRGCT
GATGAGAGTCTTCGSGAGCCGGAATGTCGAAAAAAGCTAGTCTGTGAGGT
GTACTCACGACCTGATGACGTACTTGGAGAGGGCTATTTGGGCAAAACCA
TCAAAAAAGGGATGGAGTATCTACCCTATATCCAAGAAAGATACAATGTT
GCCGCAGAGATCCTAGATGGAAAGAAAGAGGCTGAAGAACATCGTGTCTG
TGAAACTAAAAAGGCCTCTTGCGATCATTTGGAGAGGGTTTTAAATGGAA
TGATGAAAGAAAACGCTTTTCTGAATCATAAAGGGCATGGTGAACAAGTT
CAGAACTAG
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