EMLSAG00000000284, EMLSAG00000000284-683050 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000284
Unique NameEMLSAG00000000284-683050
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592809204|gb|GAXK01145364.1| (TSA: Calanus finmarchicus comp59832_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.846e-1
Identity = 24/61 (39.34%), Postives = 31/61 (50.82%), Query Frame = 0 
Query:   90 DNDGQGIIGTTRSGLAPLSISPPAKTLKSDEDDYI--GLSSFNPHKPPQCHSSSR---FRD 145
            D+DG+  +G  R+G AP     P K  KSD+  +I  G     P  PPQ  SS R   F+D
Sbjct:  784 DDDGKYKLGRGRAGKAPAQNQFPTKYFKSDKRYFIPDGAKYDQPAPPPQQDSSHRGQSFKD 966
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BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925658|gb|GAXK01032757.1| (TSA: Calanus finmarchicus comp315990_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.086e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct:  754 LAEKTEPSPEEECCPLCLAEK 816
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BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925660|gb|GAXK01032755.1| (TSA: Calanus finmarchicus comp315990_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.123e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct: 1134 LAEKTEPSPEEECCPLCLAEK 1196
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BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925662|gb|GAXK01032753.1| (TSA: Calanus finmarchicus comp315990_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.205e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct:  754 LAEKTEPSPEEECCPLCLAEK 816
[Close]
BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925664|gb|GAXK01032751.1| (TSA: Calanus finmarchicus comp315990_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.220e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct: 1134 LAEKTEPSPEEECCPLCLAEK 1196
[Close]
BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925654|gb|GAXK01032761.1| (TSA: Calanus finmarchicus comp315990_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.375e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct:  754 LAEKTEPSPEEECCPLCLAEK 816
[Close]
BLAST of EMLSAG00000000284 vs. C. finmarchicus
Match: gi|592925656|gb|GAXK01032759.1| (TSA: Calanus finmarchicus comp315990_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.032e+0
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 0 
Query:  207 MVQRTRSNPEMECCPVCLARK 227
            + ++T  +PE ECCP+CLA K
Sbjct: 1134 LAEKTEPSPEEECCPLCLAEK 1196
[Close]
BLAST of EMLSAG00000000284 vs. L. salmonis peptides
Match: EMLSAP00000000284 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:47986:49448:1 gene:EMLSAG00000000284 transcript:EMLSAT00000000284 description:"snap_masked-LSalAtl2s1042-processed-gene-0.18")

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0 
Query:    1 MELESSNVPSAPSIIDVGSRSLTEDEVLHEHXHHPLLSPPSFDHEDEEDYSSPPEEEEDVYTEDVELLEHNNNPSIKRRSMSTSEARGRDNDGQGIIGTTRSGLAPLSISPPAKTLKSDEDDYIGLSSFNPHKPPQCHSSSRFRDSIRYPGRNVRFSALDDYSSTSPTTRNTSSSIHTRTPSSRNDDNSPVGSVSGGGGHFVHSPQMVQRTRSNPEMECCPVCLARKECEILLKRTYSKRASNRERRKHSDPNIPRQTSSSSSSLTILMSCI 272
            MELESSNVPSAPSIIDVGSRSLTEDEVLHEHXHHPLLSPPSFDHEDEEDYSSPPEEEEDVYTEDVELLEHNNNPSIKRRSMSTSEARGRDNDGQGIIGTTRSGLAPLSISPPAKTLKSDEDDYIGLSSFNPHKPPQCHSSSRFRDSIRYPGRNVRFSALDDYSSTSPTTRNTSSSIHTRTPSSRNDDNSPVGSVSGGGGHFVHSPQMVQRTRSNPEMECCPVCLARKECEILLKRTYSKRASNRERRKHSDPNIPRQTSSSSSSLTILMSCI
Sbjct:    1 MELESSNVPSAPSIIDVGSRSLTEDEVLHEHXHHPLLSPPSFDHEDEEDYSSPPEEEEDVYTEDVELLEHNNNPSIKRRSMSTSEARGRDNDGQGIIGTTRSGLAPLSISPPAKTLKSDEDDYIGLSSFNPHKPPQCHSSSRFRDSIRYPGRNVRFSALDDYSSTSPTTRNTSSSIHTRTPSSRNDDNSPVGSVSGGGGHFVHSPQMVQRTRSNPEMECCPVCLARKECEILLKRTYSKRASNRERRKHSDPNIPRQTSSSSSSLTILMSCI 272
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000284 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000284 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592809204|gb|GAXK01145364.1|1.846e-139.34TSA: Calanus finmarchicus comp59832_c1_seq1 transc... [more]
gi|592925658|gb|GAXK01032757.1|3.086e+052.38TSA: Calanus finmarchicus comp315990_c0_seq7 trans... [more]
gi|592925660|gb|GAXK01032755.1|3.123e+052.38TSA: Calanus finmarchicus comp315990_c0_seq5 trans... [more]
gi|592925662|gb|GAXK01032753.1|3.205e+052.38TSA: Calanus finmarchicus comp315990_c0_seq3 trans... [more]
gi|592925664|gb|GAXK01032751.1|3.220e+052.38TSA: Calanus finmarchicus comp315990_c0_seq1 trans... [more]
gi|592925654|gb|GAXK01032761.1|4.375e+052.38TSA: Calanus finmarchicus comp315990_c0_seq11 tran... [more]
gi|592925656|gb|GAXK01032759.1|5.032e+052.38TSA: Calanus finmarchicus comp315990_c0_seq9 trans... [more]
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BLAST of EMLSAG00000000284 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002840.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1042:4798... [more]
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BLAST of EMLSAG00000000284 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000284 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000284 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000284 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1042supercontigLSalAtl2s1042:47986..49448 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1042-processed-gene-0.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000284 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000284EMLSAT00000000284-696131Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1042:47986..49448+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000284-683050 ID=EMLSAG00000000284-683050|Name=EMLSAG00000000284|organism=Lepeophtheirus salmonis|type=gene|length=1463bp|location=Sequence derived from alignment at LSalAtl2s1042:47986..49448+ (Lepeophtheirus salmonis)
ATGGAGTTGGAGTCCTCAAATGTGCCGTCTGCGCCATCCATTATTGATGT
TGGAAGTAGGAGCCTCACCGAGGATGAGGTTCTCCATGAGCATCMCCACC
ATCCTCTCCTTTCTCCTCCATCCTTTGATCACGAAGACGAAGAAGATTAT
TCATCTCCTCCAGAAGAAGAAGAGGATGTGTATACAGAAGATGTAGAACT
TCTTGAACACAATAACAATCCCTCCATAAAGAGACGCTCAATGAGTACTT
CTGAAGCAAGAGGAAGGGATAATGATGGGCAGGGTATTATTGGGACTACC
CGTAGTGGTCTGGCCCCTCTTTCAATATCACCTCCTGCAAAAACACTCAA
ATCAGATGAGGATGATTATATTGGCCTCTCCAGTTTTAATCCGCACAAAC
CTCCTCAGTGTCATTCCTCTTCAAGATTTCGAGACTCTATTCGATACCCT
GGTCGCAATGTACGATTCTCTGCTCTGGATGATTATAGTAGTACTTCTCC
TACTACCAGAAACACAAGCAGTAGCATTCATACTCGAACTCCGTCCTCCA
GAAGTGATCGMCTMCGCTCMCGCTGTCMCCATTTATAYCCGCCATCCAAT
CTTACAGATGACGACAATTCTCCTGTAGGAAGTGTTAGTGGGGGTGGAGG
ACATTTTGTCCATTCTCCCCAAATGGTTCAAAGGACGCGCTCAAATCCTG
AAATGGAATGCTGTCCTGTTTGTTTAGCTCGCAAAGAGTGTGAAATCCTT
TTAAAAAGAACTTATAGCAAGGTATGTAATAATTATGTCCAATGGCAGGG
TGGGTTCTTAGTATCCCATCATAATCAAAATCATAATTAATTCGAATGTG
TCAAATGCATTTCTCTAGACTCTAATTGATCTTCATACAACATACCATGT
ACTCTATTTTTGGATGCATTTATTTAGTTTTTATTATTTTTTTGTTACAG
AGAGCAAGTAATCGGGAGAGGCGAAAACATTCCGATCCAAATATTCCWAG
ACAAACTTCCAGGTAAGTTTATATCTATCCAATTCTTTTCATTTTTCTTA
CTTGGGTGGGGATCAAACGCATATGTATTTTCCTGTGTTTTATTCAATAA
TAACTGGATATTAATAGTTAATATACATTGAGCATGCAGTAATAATCAAA
CTTCAAAATGAACACATTTTTGATCACGAATCAGCTAGGTTTGTATGTAG
GTACTTGTAGTAAGTAGTATCTATATTGGTTATTTCATAATATTTCATGT
TACATAATTAGTTACTACTAAATAAGATTACATACAACATACAGTAGTCG
TATCTACCCTTGCCAGTTGACATGGATCCTATGCGTGTCTGAATGAAGGT
CCATCCAATTTCACCAATATATGTACACTAATTATTACTAATCATTCTAA
TATGTACCAATTATTATTATTAGTAGTAGTAGTAGTCTCACCATATTAAT
GAGTTGTATTTAA
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