EMLSAG00000000303, EMLSAG00000000303-683069 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000303 vs. C. finmarchicus
Match: gi|592868113|gb|GAXK01089449.1| (TSA: Calanus finmarchicus comp1195133_c0_seq3 transcribed RNA sequence) HSP 1 Score: 166.777 bits (421), Expect = 1.072e-40 Identity = 86/206 (41.75%), Postives = 134/206 (65.05%), Query Frame = 0
Query: 1336 PLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASY---GADDXXXXXXXXXXXXXKHIANVASQNRNTHFLVSLPIPRNTKD-EDQITMRFHE-LRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRR 1536
PL ECFI+SRGWQ+DQ++L +A+ ++ ++F R+Q+A T+NR++EN+RPH DV+++HIG+ EL EA + D+ +A S++SV S+HI R T +VS+PIPRNT D + + F++ LRK F L + + NV N+NLA G+ + K+Y+D+V L++ GM+KL KNWE + R+ + +G I+ RR
Sbjct: 153 PLSVECFIVSRGWQIDQAQLNKAIAKLDGINFVRIQMANTINRVIENIRPHNDVVLIHIGTTELSEACHSINSVDNVPGLAGSIASVFSRHIITACRTFRETKIVVSMPIPRNTMDAQPSDCLHFYDSLRKGFTNCLRANFIDYDNVIICSNDNLANDA--GQPDSKFYTDSVNLNNAGMKKLTKNWEAIIQRMKRISDGLIHYRR 764 HSP 2 Score: 36.5798 bits (83), Expect = 1.047e+0 Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0
Query: 1217 HSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQ 1253
+S ERLPTL+A +EE++ LK +ED+ E+R+ Q
Sbjct: 1143 YSSERLPTLTASEEERIHRLKKYEDETEKINEKRETQ 1253
BLAST of EMLSAG00000000303 vs. C. finmarchicus
Match: gi|592868114|gb|GAXK01089448.1| (TSA: Calanus finmarchicus comp1195133_c0_seq2 transcribed RNA sequence) HSP 1 Score: 166.777 bits (421), Expect = 2.394e-40 Identity = 86/206 (41.75%), Postives = 134/206 (65.05%), Query Frame = 0
Query: 1336 PLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASY---GADDXXXXXXXXXXXXXKHIANVASQNRNTHFLVSLPIPRNTKD-EDQITMRFHE-LRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRR 1536
PL ECFI+SRGWQ+DQ++L +A+ ++ ++F R+Q+A T+NR++EN+RPH DV+++HIG+ EL EA + D+ +A S++SV S+HI R T +VS+PIPRNT D + + F++ LRK F L + + NV N+NLA G+ + K+Y+D+V L++ GM+KL KNWE + R+ + +G I+ RR
Sbjct: 153 PLSVECFIVSRGWQIDQAQLNKAIAKLDGINFVRIQMANTINRVIENIRPHNDVVLIHIGTTELSEACHSINSVDNVPGLAGSIASVFSRHIITACRTFRETKIVVSMPIPRNTMDAQPSDCLHFYDSLRKGFTNCLRANFIDYDNVIICSNDNLANDA--GQPDSKFYTDSVNLNNAGMKKLTKNWEAIIQRMKRISDGLIHYRR 764 HSP 2 Score: 84.7297 bits (208), Expect = 2.178e-15 Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0
Query: 348 DPRRTVNYLDLSKLGEEGETPASDEIWLPLGDEDKFLSSDTDTFSIGTDKLSNIANMSG 406
D R+VNYLDLSKLG EGETP SDEIW+ + D++KFL+SDT+T+S+ TDK+S +A G
Sbjct: 4173 DLARSVNYLDLSKLGNEGETPNSDEIWVTVEDDNKFLTSDTETYSVATDKVSTMATFKG 4349 HSP 3 Score: 45.0542 bits (105), Expect = 2.842e-3 Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0
Query: 628 ITLARSDNTILRQDIQICRERESQLLMRTIDLEDKIIKA 666
+ A+ DN+ LRQD+ I +ERE+QL+ R I+LE K+I+A
Sbjct: 3153 VQTAQHDNSALRQDLVIQKEREAQLVKRNIELEAKLIRA 3269 HSP 4 Score: 36.5798 bits (83), Expect = 1.119e+0 Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0
Query: 1217 HSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQ 1253
+S ERLPTL+A +EE++ LK +ED+ E+R+ Q
Sbjct: 1143 YSSERLPTLTASEEERIHRLKKYEDETEKINEKRETQ 1253
BLAST of EMLSAG00000000303 vs. C. finmarchicus
Match: gi|592868115|gb|GAXK01089447.1| (TSA: Calanus finmarchicus comp1195133_c0_seq1 transcribed RNA sequence) HSP 1 Score: 166.777 bits (421), Expect = 2.398e-40 Identity = 86/206 (41.75%), Postives = 134/206 (65.05%), Query Frame = 0
Query: 1336 PLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASY---GADDXXXXXXXXXXXXXKHIANVASQNRNTHFLVSLPIPRNTKD-EDQITMRFHE-LRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRR 1536
PL ECFI+SRGWQ+DQ++L +A+ ++ ++F R+Q+A T+NR++EN+RPH DV+++HIG+ EL EA + D+ +A S++SV S+HI R T +VS+PIPRNT D + + F++ LRK F L + + NV N+NLA G+ + K+Y+D+V L++ GM+KL KNWE + R+ + +G I+ RR
Sbjct: 153 PLSVECFIVSRGWQIDQAQLNKAIAKLDGINFVRIQMANTINRVIENIRPHNDVVLIHIGTTELSEACHSINSVDNVPGLAGSIASVFSRHIITACRTFRETKIVVSMPIPRNTMDAQPSDCLHFYDSLRKGFTNCLRANFIDYDNVIICSNDNLANDA--GQPDSKFYTDSVNLNNAGMKKLTKNWEAIIQRMKRISDGLIHYRR 764 HSP 2 Score: 84.7297 bits (208), Expect = 2.179e-15 Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0
Query: 348 DPRRTVNYLDLSKLGEEGETPASDEIWLPLGDEDKFLSSDTDTFSIGTDKLSNIANMSG 406
D R+VNYLDLSKLG EGETP SDEIW+ + D++KFL+SDT+T+S+ TDK+S +A G
Sbjct: 4173 DLARSVNYLDLSKLGNEGETPNSDEIWVTVEDDNKFLTSDTETYSVATDKVSTMATFKG 4349 HSP 3 Score: 45.0542 bits (105), Expect = 2.842e-3 Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0
Query: 628 ITLARSDNTILRQDIQICRERESQLLMRTIDLEDKIIKA 666
+ A+ DN+ LRQD+ I +ERE+QL+ R I+LE K+I+A
Sbjct: 3153 VQTAQHDNSALRQDLVIQKEREAQLVKRNIELEAKLIRA 3269 HSP 4 Score: 36.5798 bits (83), Expect = 1.120e+0 Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0
Query: 1217 HSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQ 1253
+S ERLPTL+A +EE++ LK +ED+ E+R+ Q
Sbjct: 1143 YSSERLPTLTASEEERIHRLKKYEDETEKINEKRETQ 1253
BLAST of EMLSAG00000000303 vs. C. finmarchicus
Match: gi|592761128|gb|GAXK01193285.1| (TSA: Calanus finmarchicus comp2131826_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 5.875e-3 Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = 0
Query: 2 SERADSSATVILSPSRNSTSTTTA---SLEIPKGLKGLLDDITKEVLNLSPESHQLYKVCADYLERRXXXR 69
SE+ S I P NSTS+T ++ +P GLK +L+D++KEV+ P + LY CA LE+R R
Sbjct: 438 SEQRRESRRQISVPPSNSTSSTKPKQRTISVPAGLKDILNDLSKEVIFGQPANIPLY--CAQILEQRIEER 644
BLAST of EMLSAG00000000303 vs. L. salmonis peptides
Match: EMLSAP00000000303 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:42742:114948:-1 gene:EMLSAG00000000303 transcript:EMLSAT00000000303 description:"maker-LSalAtl2s1044-augustus-gene-0.37") HSP 1 Score: 3118.95 bits (8085), Expect = 0.000e+0 Identity = 1552/1552 (100.00%), Postives = 1552/1552 (100.00%), Query Frame = 0
Query: 1 MSERADSSATVILSPSRNSTSTTTASLEIPKGLKGLLDDITKEVLNLSPESHQLYKVCADYLERRXXXRDPSSLLNTPVRRPPLRMISTYTTDSDSGLDVGATPIKGKFGSSKVRTHTSDWCQSSNRKDSLQVIALCKEWEEKMIAPRSLSTSYGAYCLHYYVNGGRKEGGTVPPIENIQERGLLLSTSDFEEDTTEGTTSFPTKKSSSYSESILEIEATFQETLLSRTELLLNESGKLSPLYPPNSNDKEDFTPSEELKEIRLETLRRAKLPISVHFTNEKALLNDFKSSQDLCPPLRLFINPEKPLLSTKDGCVQTSNSPPPVQDDVVARVLLEHAEEELDEIIRDPRRTVNYLDLSKLGEEGETPASDEIWLPLGDEDKFLSSDTDTFSIGTDKLSNIANMSGDELPTHSPMETENYSKFMGPIQEGLAVTSQNVLELSGKFKDLENTLRDLCQTVEEIKCTKTKQMDEIIHKMNEKCIRCSSNSAELKESTSSSGVKSKTITDTKQIADQLREDNSLLRQDLQRFRDRENKLFDRLEGLEHRLLRVNLNDSAQTSPPSDRSTFPLIQTELKKTKEFITNTVVADTEEIILPIDVNKSRRLSNDSRSSSAGNTRITAKLRPINDITLARSDNTILRQDIQICRERESQLLMRTIDLEDKIIKAASEDDTSNKKKKVKPEVNINIDFSVEQIKNGKNRQEAHQTVKVEIQDDKLPGKEHLSLGDIKSPVPEKHSETERQDPPLASSTESEPQIEKIKEIEAPKALLESKPSKFKESKVSKPSKSKNEEIISPSSXLTSKEEPKKXXKTXSHSKKEETSKLGKKDGKKISTTLPPSSTKESSSIAKSQKNSNSKSKSLESSNEVIEDQKPKKENVLPTTSSSKKPSPSTLLASKKPTSTQNKQPPEKERLXNNQTESNKVVKQSLYDGDDWKVTISSKHQLETIAQGPQTITISPKPPPSPPPPITPPPKVIKKDAKIEVIRKEPKEKKAVVKREKPPPPKTDPIPKPSMFPAARPPRGHIPIPPHRTVPKNPYQLFPVSPPPPPMTSEPFNSYEINNNLNSTSNNNSNPYDVLLKPRDTSTFETNSIIRSSPDGANSLAXLELKNESSNESSKVKEEKVPGREQNKSSSSQGQEIDDNFTNELITFDSNNNKCKSKTLGHHKPRLLKRSLKSPFKKLDHGSANQRLRLSKRSKSTSQLNKPTPEVTRPKLIRAHHSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQSLKELSPTDSSSPTSSSDGHTRSKSQNHVVVIDEVGKIESSNSSVGHKGDTIDDSATSSDNEYEEIKKSLKRKSKKEKKSHKPLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASYGADDXSSVANSVSSVISKHIANVASQNRNTHFLVSLPIPRNTKDEDQITMRFHELRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRRASDSSSGGSSNEPRKL 1552
MSERADSSATVILSPSRNSTSTTTASLEIPKGLKGLLDDITKEVLNLSPESHQLYKVCADYLERRXXXRDPSSLLNTPVRRPPLRMISTYTTDSDSGLDVGATPIKGKFGSSKVRTHTSDWCQSSNRKDSLQVIALCKEWEEKMIAPRSLSTSYGAYCLHYYVNGGRKEGGTVPPIENIQERGLLLSTSDFEEDTTEGTTSFPTKKSSSYSESILEIEATFQETLLSRTELLLNESGKLSPLYPPNSNDKEDFTPSEELKEIRLETLRRAKLPISVHFTNEKALLNDFKSSQDLCPPLRLFINPEKPLLSTKDGCVQTSNSPPPVQDDVVARVLLEHAEEELDEIIRDPRRTVNYLDLSKLGEEGETPASDEIWLPLGDEDKFLSSDTDTFSIGTDKLSNIANMSGDELPTHSPMETENYSKFMGPIQEGLAVTSQNVLELSGKFKDLENTLRDLCQTVEEIKCTKTKQMDEIIHKMNEKCIRCSSNSAELKESTSSSGVKSKTITDTKQIADQLREDNSLLRQDLQRFRDRENKLFDRLEGLEHRLLRVNLNDSAQTSPPSDRSTFPLIQTELKKTKEFITNTVVADTEEIILPIDVNKSRRLSNDSRSSSAGNTRITAKLRPINDITLARSDNTILRQDIQICRERESQLLMRTIDLEDKIIKAASEDDTSNKKKKVKPEVNINIDFSVEQIKNGKNRQEAHQTVKVEIQDDKLPGKEHLSLGDIKSPVPEKHSETERQDPPLASSTESEPQIEKIKEIEAPKALLESKPSKFKESKVSKPSKSKNEEIISPSSXLTSKEEPKKXXKTXSHSKKEETSKLGKKDGKKISTTLPPSSTKESSSIAKSQKNSNSKSKSLESSNEVIEDQKPKKENVLPTTSSSKKPSPSTLLASKKPTSTQNKQPPEKERLXNNQTESNKVVKQSLYDGDDWKVTISSKHQLETIAQGPQTITISPKPPPSPPPPITPPPKVIKKDAKIEVIRKEPKEKKAVVKREKPPPPKTDPIPKPSMFPAARPPRGHIPIPPHRTVPKNPYQLFPVSPPPPPMTSEPFNSYEINNNLNSTSNNNSNPYDVLLKPRDTSTFETNSIIRSSPDGANSLAXLELKNESSNESSKVKEEKVPGREQNKSSSSQGQEIDDNFTNELITFDSNNNKCKSKTLGHHKPRLLKRSLKSPFKKLDHGSANQRLRLSKRSKSTSQLNKPTPEVTRPKLIRAHHSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQSLKELSPTDSSSPTSSSDGHTRSKSQNHVVVIDEVGKIESSNSSVGHKGDTIDDSATSSDNEYEEIKKSLKRKSKKEKKSHKPLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASYGADDXSSVANSVSSVISKHIANVASQNRNTHFLVSLPIPRNTKDEDQITMRFHELRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRRASDSSSGGSSNEPRKL
Sbjct: 1 MSERADSSATVILSPSRNSTSTTTASLEIPKGLKGLLDDITKEVLNLSPESHQLYKVCADYLERRXXXRDPSSLLNTPVRRPPLRMISTYTTDSDSGLDVGATPIKGKFGSSKVRTHTSDWCQSSNRKDSLQVIALCKEWEEKMIAPRSLSTSYGAYCLHYYVNGGRKEGGTVPPIENIQERGLLLSTSDFEEDTTEGTTSFPTKKSSSYSESILEIEATFQETLLSRTELLLNESGKLSPLYPPNSNDKEDFTPSEELKEIRLETLRRAKLPISVHFTNEKALLNDFKSSQDLCPPLRLFINPEKPLLSTKDGCVQTSNSPPPVQDDVVARVLLEHAEEELDEIIRDPRRTVNYLDLSKLGEEGETPASDEIWLPLGDEDKFLSSDTDTFSIGTDKLSNIANMSGDELPTHSPMETENYSKFMGPIQEGLAVTSQNVLELSGKFKDLENTLRDLCQTVEEIKCTKTKQMDEIIHKMNEKCIRCSSNSAELKESTSSSGVKSKTITDTKQIADQLREDNSLLRQDLQRFRDRENKLFDRLEGLEHRLLRVNLNDSAQTSPPSDRSTFPLIQTELKKTKEFITNTVVADTEEIILPIDVNKSRRLSNDSRSSSAGNTRITAKLRPINDITLARSDNTILRQDIQICRERESQLLMRTIDLEDKIIKAASEDDTSNKKKKVKPEVNINIDFSVEQIKNGKNRQEAHQTVKVEIQDDKLPGKEHLSLGDIKSPVPEKHSETERQDPPLASSTESEPQIEKIKEIEAPKALLESKPSKFKESKVSKPSKSKNEEIISPSSXLTSKEEPKKXXKTXSHSKKEETSKLGKKDGKKISTTLPPSSTKESSSIAKSQKNSNSKSKSLESSNEVIEDQKPKKENVLPTTSSSKKPSPSTLLASKKPTSTQNKQPPEKERLXNNQTESNKVVKQSLYDGDDWKVTISSKHQLETIAQGPQTITISPKPPPSPPPPITPPPKVIKKDAKIEVIRKEPKEKKAVVKREKPPPPKTDPIPKPSMFPAARPPRGHIPIPPHRTVPKNPYQLFPVSPPPPPMTSEPFNSYEINNNLNSTSNNNSNPYDVLLKPRDTSTFETNSIIRSSPDGANSLAXLELKNESSNESSKVKEEKVPGREQNKSSSSQGQEIDDNFTNELITFDSNNNKCKSKTLGHHKPRLLKRSLKSPFKKLDHGSANQRLRLSKRSKSTSQLNKPTPEVTRPKLIRAHHSVERLPTLSAFDEEKVVWLKSFEDDITYAQERRKMQSLKELSPTDSSSPTSSSDGHTRSKSQNHVVVIDEVGKIESSNSSVGHKGDTIDDSATSSDNEYEEIKKSLKRKSKKEKKSHKPLVAECFIISRGWQMDQSRLIRALDRIKCVSFHRVQVATTVNRMVENLRPHQDVIVLHIGSQELLEASYGADDXSSVANSVSSVISKHIANVASQNRNTHFLVSLPIPRNTKDEDQITMRFHELRKAFNTSLSCSLLHSINVQCIDNENLAQQGSEGELEPKYYSDNVQLSSKGMRKLAKNWEEFLLRITKTKEGNIYVRRASDSSSGGSSNEPRKL 1552 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000303 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000303 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000000303 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000303 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000303 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000303 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000303 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1044:42742..114948- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000303-683069 ID=EMLSAG00000000303-683069|Name=EMLSAG00000000303|organism=Lepeophtheirus salmonis|type=gene|length=72207bp|location=Sequence derived from alignment at LSalAtl2s1044:42742..114948- (Lepeophtheirus salmonis)back to top Add to Basket
|