EMLSAG00000000372, EMLSAG00000000372-683138 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592834543|gb|GAXK01123001.1| (TSA: Calanus finmarchicus comp4158813_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 3.534e-6 Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 0 Query: 13 SAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 S + S +L+++Y +I+KC D+ CC +RTN + FP R P + K+ SG Sbjct: 491 SPAFRSRHILETQYMTIILKCDDRQCCSAMRTNVDMFFPDRRVPALIPVKFSPSG 655
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592765207|gb|GAXK01189361.1| (TSA: Calanus finmarchicus comp1214061_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 1.155e-4 Identity = 16/47 (34.04%), Postives = 28/47 (59.57%), Query Frame = 0 Query: 21 VLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 V +++Y + +KC D++CC LRT + FP+R P + K+ +G Sbjct: 1887 VFETQYMSVFLKCDDRSCCSALRTMVDSFFPHRRIPALIPVKFSVAG 2027
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592838383|gb|GAXK01119161.1| (TSA: Calanus finmarchicus comp5898468_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 3.630e-2 Identity = 21/71 (29.58%), Postives = 31/71 (43.66%), Query Frame = 0 Query: 7 ETFEEPSAK----------WFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 E EEPS + S +L++RY + +KC D CC RT+ FP R P + + +G Sbjct: 509 EFIEEPSKDETLNYTVTPYYRSRHILETRYMTIYLKCDDLACCSKPRTSVASFFPGRRIPALIPIHHTPTG 721
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592833983|gb|GAXK01123561.1| (TSA: Calanus finmarchicus comp7076450_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 8.754e-2 Identity = 16/55 (29.09%), Postives = 28/55 (50.91%), Query Frame = 0 Query: 13 SAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 SA + S ++Q++Y +++KC D +CC +T F R P + K+ G Sbjct: 253 SAFYKSRHIIQTQYMTIVLKCDDLSCCTKPKTQIMSFFLGRRLPALIPIKFSDCG 417
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592845058|gb|GAXK01112486.1| (TSA: Calanus finmarchicus comp197699_c1_seq5 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 2.375e+0 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 0 Query: 10 EEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPL 42 ++P+ WF MLVL+ +V +CC+P+ Sbjct: 206 QQPNKIWFIMLVLKM*LYGNLVNILQSSCCQPM 304
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592845056|gb|GAXK01112488.1| (TSA: Calanus finmarchicus comp197699_c1_seq7 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 2.508e+0 Identity = 11/33 (33.33%), Postives = 19/33 (57.58%), Query Frame = 0 Query: 10 EEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPL 42 ++P+ WF MLVL+ +V +CC+P+ Sbjct: 206 QQPNKIWFIMLVLKM*LYGNLVNILQSSCCQPM 304
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592758289|gb|GAXK01196124.1| (TSA: Calanus finmarchicus comp701035_c0_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 2.892e+0 Identity = 12/31 (38.71%), Postives = 15/31 (48.39%), Query Frame = 0 Query: 26 YALLIVKCFDKNCCEPLRTNWNRVFPYRFFP 56 Y L +K KN C P+ + NRV FP Sbjct: 133 YHFLFLKLKKKNTCHPMNSKRNRVRAVEHFP 225
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592894604|gb|GAXK01063771.1| (TSA: Calanus finmarchicus comp3585810_c0_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 3.524e+0 Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 0 Query: 38 CCEPLRTNWNRVFP 51 CCEPLR + +R FP Sbjct: 253 CCEPLRRDHHRTFP 294
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592820539|gb|GAXK01134029.1| (TSA: Calanus finmarchicus comp1947440_c0_seq2 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 5.137e+0 Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 0 Query: 46 WNRVFPYRFFPTPLVYKYGTSG 67 W+ + RF P P +Y++GT G Sbjct: 677 WHTIICRRFLPFPCLYRHGTHG 742
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Match: gi|592820540|gb|GAXK01134028.1| (TSA: Calanus finmarchicus comp1947440_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 5.435e+0 Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 0 Query: 46 WNRVFPYRFFPTPLVYKYGTSG 67 W+ + RF P P +Y++GT G Sbjct: 677 WHTIICRRFLPFPCLYRHGTHG 742
BLAST of EMLSAG00000000372 vs. L. salmonis peptides
Match: EMLSAP00000000372 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1056:392725:394192:1 gene:EMLSAG00000000372 transcript:EMLSAT00000000372 description:"maker-LSalAtl2s1056-snap-gene-2.22") HSP 1 Score: 143.665 bits (361), Expect = 3.882e-46 Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 Query: 1 MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68 MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL Sbjct: 1 MLKDCRETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68
BLAST of EMLSAG00000000372 vs. Select Arthropod Genomes
Match: EFX81466.1 (hypothetical protein DAPPUDRAFT_317650 [Daphnia pulex]) HSP 1 Score: 50.447 bits (119), Expect = 3.066e-8 Identity = 24/62 (38.71%), Postives = 30/62 (48.39%), Query Frame = 0 Query: 7 ETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68 E +KWFS V S+Y IVKC D CC R+++ V P RF P P+ GL Sbjct: 568 ENLVTKDSKWFSQHVRTSQYFTQIVKCLDVTCCAKPRSSYFTVVPGRFIPPPIPIYQSADGL 629
BLAST of EMLSAG00000000372 vs. nr
Match: gi|828225853|ref|XP_012563449.1| (PREDICTED: uncharacterized protein LOC105848061 [Hydra vulgaris]) HSP 1 Score: 63.5438 bits (153), Expect = 2.722e-10 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0 Query: 12 PSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 P W QSRY+L IVKC +++CC P TNW + FP RF P P +Y+Y +G Sbjct: 360 PDPVWVDKHCQQSRYSLQIVKCQEESCCTPFETNWLKNFPQRFIPFPAIYEYCENG 415
BLAST of EMLSAG00000000372 vs. nr
Match: gi|828227748|ref|XP_012564059.1| (PREDICTED: uncharacterized protein LOC105848481, partial [Hydra vulgaris]) HSP 1 Score: 60.8474 bits (146), Expect = 2.913e-9 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0 Query: 12 PSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSG 67 P W QSRY+L IVKC +++CC P TNW + FP RF P P +Y+Y +G Sbjct: 408 PDPVWVDKHCQQSRYSLQIVKCQEESCCTPFETNWLKNFPQRFIPFPAIYEYCENG 463
BLAST of EMLSAG00000000372 vs. nr
Match: gi|675864614|ref|XP_009017867.1| (hypothetical protein HELRODRAFT_172961 [Helobdella robusta] >gi|555700698|gb|ESO03931.1| hypothetical protein HELRODRAFT_172961 [Helobdella robusta]) HSP 1 Score: 57.7658 bits (138), Expect = 3.025e-8 Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0 Query: 9 FEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68 + P WF+ V QS+Y L I+KC + CC R+++N +FP+RF P P+ Y +G+ Sbjct: 374 LQAPPNDWFASHVRQSQYCLHIIKCNTEACCGLKRSHFNEIFPHRFLPPPIPYIITKTGI 433
BLAST of EMLSAG00000000372 vs. nr
Match: gi|170067470|ref|XP_001868493.1| (conserved hypothetical protein [Culex quinquefasciatus] >gi|167863617|gb|EDS27000.1| conserved hypothetical protein [Culex quinquefasciatus]) HSP 1 Score: 57.7658 bits (138), Expect = 3.155e-8 Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0 Query: 7 ETFEEPSAKWFSMLVLQSRYALLIVKCFDKNCCEPLRTNWNRVFPYRFFPTPLVYKYGTSGL 68 E+ E WFS V S+Y L IVKC +++CC PLR++ + V P RF P P+ + + GL Sbjct: 660 ESLECRDQCWFSNHVRTSQYMLQIVKCDNRSCCSPLRSSLSTVLPGRFLPPPIPLIHSSDGL 721 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000372 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000372 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 13
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BLAST of EMLSAG00000000372 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000372 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000372 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000000372 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 4
BLAST of EMLSAG00000000372 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1056:392725..394192+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000372-683138 ID=EMLSAG00000000372-683138|Name=EMLSAG00000000372|organism=Lepeophtheirus salmonis|type=gene|length=1468bp|location=Sequence derived from alignment at LSalAtl2s1056:392725..394192+ (Lepeophtheirus salmonis)back to top Add to Basket
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