EMLSAG00000000387, EMLSAG00000000387-683153 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864312|gb|GAXK01093250.1| (TSA: Calanus finmarchicus comp721368_c0_seq7 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 1.195e-10 Identity = 39/140 (27.86%), Postives = 67/140 (47.86%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-------DSSGNMPHFEIDSLYG-VQSIAWPFLIGGIFTAFT 132 +GS + AG+ ++P++ +F + F F + +L +Y +GP +S P+ A++A G+G G+++ RPFLP +D +CG + GN+ +D L + +I WPFLI FT Sbjct: 271 LGSFILCAGVFVGLVPWVSSFSILMPALLVAGFSSSCFNVGNCALTVYMLGPERSAPYMQALNAFVGLGFMFGSLIVRPFLPEQAED-SSICGNSKEQMMTNVTFNEEGNV---YVDELVETIPAIVWPFLIIASIHIFT 678
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864317|gb|GAXK01093245.1| (TSA: Calanus finmarchicus comp721368_c0_seq2 transcribed RNA sequence) HSP 1 Score: 61.6178 bits (148), Expect = 1.558e-10 Identity = 39/140 (27.86%), Postives = 67/140 (47.86%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-------DSSGNMPHFEIDSLYG-VQSIAWPFLIGGIFTAFT 132 +GS + AG+ ++P++ +F + F F + +L +Y +GP +S P+ A++A G+G G+++ RPFLP +D +CG + GN+ +D L + +I WPFLI FT Sbjct: 677 LGSFILCAGVFVGLVPWVSSFSILMPALLVAGFSSSCFNVGNCALTVYMLGPERSAPYMQALNAFVGLGFMFGSLIVRPFLPEQAED-SSICGNSKEQMMTNVTFNEEGNV---YVDELVETIPAIVWPFLIIASIHIFT 1084 HSP 2 Score: 41.2022 bits (95), Expect = 1.167e-3 Identity = 35/123 (28.46%), Postives = 51/123 (41.46%), Query Frame = 0 Query: 61 AIHAICGVGCFLGTILARPFLPPSNDDME----DLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTA--FTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 +IH G+ F+ I P LP + E +LC K + + H I G F + +TFGICGP + P A + + Y F+ GR+ V LA ++P MI Sbjct: 332 SIHIFTGLAIFVLAISKCP-LPEYKEKEEKPDAELCNK-TEKEEKNILKHPYILLFLSFLFFTISSGTEGFFISQTYTFGICGPHKMMPTKAASLTTVYFSCFLVGRLSGVFLASRLQPHVMI 694
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864318|gb|GAXK01093244.1| (TSA: Calanus finmarchicus comp721368_c0_seq1 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 1.704e-10 Identity = 41/144 (28.47%), Postives = 67/144 (46.53%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSLY-GVQSIAWPFLIGGIFTAFT 132 +GS + AG+ ++P++ +F + F F + +L +Y +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + I WPFLI F FT Sbjct: 677 LGSFILCAGVFVGLVPWVSSFSILMPALLVAGFSSSCFNVGNCALTVYMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFT 1096 HSP 2 Score: 38.1206 bits (87), Expect = 1.035e-2 Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0 Query: 127 IFTAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 I +TFGICGP + P A + + Y F+ GR+ V LA ++P MI Sbjct: 332 ISQTYTFGICGPHKMMPTKAASLTTVYFSCFLVGRLSGVFLASRLQPHVMI 484
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864316|gb|GAXK01093246.1| (TSA: Calanus finmarchicus comp721368_c0_seq3 transcribed RNA sequence) HSP 1 Score: 60.4622 bits (145), Expect = 3.079e-10 Identity = 40/144 (27.78%), Postives = 67/144 (46.53%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSL-YGVQSIAWPFLIGGIFTAFT 132 +GS + AG+ ++P++ +F + F F + +L +Y +GP +S P+ A++A G+G G+++ RPFLP +D +CG + GN+ +D L + I WPFLI F FT Sbjct: 316 LGSFILCAGVFVGLVPWVSSFSILMPALLVAGFSSSCFNVGNCALTVYMLGPERSAPYMQALNAFVGLGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFT 735 HSP 2 Score: 30.8018 bits (68), Expect = 2.439e+0 Identity = 30/113 (26.55%), Postives = 47/113 (41.59%), Query Frame = 0 Query: 61 AIHAICGVGCFLGTILARPFLPPSNDDME----DLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIF--TAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGL 167 + H G+ F+ ++ P LP + E +LC K + + + H I A G F ++TFGICGP + P A + + Y F+ GR+ V L Sbjct: 1 SFHIFTGLAFFVLAMVKCP-LPEHKEKTEKADEELCNKTEKKEMN-ILKHPYILLFLSFLYFAISSGTEGFFISQSYTFGICGPHKMIPTKAASLTTVYFSCFLAGRLSGVFL 333
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864314|gb|GAXK01093248.1| (TSA: Calanus finmarchicus comp721368_c0_seq5 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 3.473e-10 Identity = 40/144 (27.78%), Postives = 67/144 (46.53%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSL-YGVQSIAWPFLIGGIFTAFT 132 +GS + AG+ ++P++ +F + F F + +L +Y +GP +S P+ A++A G+G G+++ RPFLP +D +CG + GN+ +D L + I WPFLI F FT Sbjct: 271 LGSFILCAGVFVGLVPWVSSFSILMPALLVAGFSSSCFNVGNCALTVYMLGPERSAPYMQALNAFVGLGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFT 690
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592796981|gb|GAXK01157587.1| (TSA: Calanus finmarchicus comp3295217_c0_seq1 transcribed RNA sequence) HSP 1 Score: 60.077 bits (144), Expect = 4.036e-10 Identity = 37/115 (32.17%), Postives = 60/115 (52.17%), Query Frame = 0 Query: 36 GAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDM---EDLCGKGNSSDSSGNMPHFEIDSLYGVQ-----------SIAWPFLIGGI---FTAFTF 133 G+ TA SL+++ +GP +S PFT ++HA +G LG+++ RPFLP +++ +L +G S+ S + +D V+ +I WPFLI + TAF F Sbjct: 394 GSLSTASNSLVLFMLGPDRSPPFTQSLHAFVALGFVLGSLIVRPFLPAKEENLSVCNELEPQGYSNVSQDK--NMVVDQELSVEDVSTIVDAHIPNIVWPFLIIAVVNFITAFGF 732 HSP 2 Score: 44.2838 bits (103), Expect = 7.850e-5 Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 0 Query: 130 AFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLL 182 FTFGICGP ++P A + + Y F+ GR V L+ +RP+ MI L+ Sbjct: 46 TFTFGICGPHKMEPEMAASLTTVYFASFLAGRFSGVLLSTKLRPQTMILASLI 204
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864309|gb|GAXK01093253.1| (TSA: Calanus finmarchicus comp721368_c0_seq10 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 2.329e-8 Identity = 30/99 (30.30%), Postives = 50/99 (50.51%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-------DSSGNMPHFEIDSLYG-VQSIAWPFLIGGIFTAFT 132 +++ ++ +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + +I WPFLI FT Sbjct: 271 NSAFTVFMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQAED-SSICGNSKEQMMTNVTFNEEGNV---YVDELVETIPAIVWPFLIIASIHIFT 555
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864311|gb|GAXK01093251.1| (TSA: Calanus finmarchicus comp721368_c0_seq8 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 2.450e-8 Identity = 38/161 (23.60%), Postives = 67/161 (41.61%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSL-YGVQSIAWPFLI---GGIFTAFTFGICG----PLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLF 183 +++ ++ +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + I WPFLI IFT F + PL D +C + + + P ++++ L+ Sbjct: 157 NSAFTVFMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFTGLAFFVLAMVKCPLPEHKEKTEKADEE-----LCNKTEKKEMNILKHPYILLFLSFLY 612 HSP 2 Score: 31.187 bits (69), Expect = 1.863e+0 Identity = 30/115 (26.09%), Postives = 49/115 (42.61%), Query Frame = 0 Query: 61 AIHAICGVGCFLGTILARPFLPPSNDDME----DLCGKGNSSDSS-GNMPH---FEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGL 167 + H G+ F+ ++ P LP + E +LC K + + P+ F + + S F I ++TFGICGP + P A + + Y F+ GR+ V L Sbjct: 1 SFHIFTGLAFFVLAMVKCP-LPEHKEKTEKADEELCNKTEKKEMNILKHPYILLFLSFLYFAISSGTEGFFIS---QSYTFGICGPHKMIPTKAASLTTVYFSCFLAGRLSGVFL 333
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864313|gb|GAXK01093249.1| (TSA: Calanus finmarchicus comp721368_c0_seq6 transcribed RNA sequence) HSP 1 Score: 54.299 bits (129), Expect = 3.198e-8 Identity = 30/99 (30.30%), Postives = 50/99 (50.51%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-------DSSGNMPHFEIDSLYG-VQSIAWPFLIGGIFTAFT 132 +++ ++ +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + +I WPFLI FT Sbjct: 677 NSAFTVFMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQAED-SSICGNSKEQMMTNVTFNEEGNV---YVDELVETIPAIVWPFLIIASIHIFT 961 HSP 2 Score: 41.2022 bits (95), Expect = 9.603e-4 Identity = 34/122 (27.87%), Postives = 54/122 (44.26%), Query Frame = 0 Query: 61 AIHAICGVGCFLGTILARPFLPPSNDDME----DLCGKGNSSDSS-GNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 +IH G+ F+ I P LP + E +LC K + + P+ + + +I+ I +TFGICGP + P A + + Y F+ GR+ V LA ++P MI Sbjct: 332 SIHIFTGLAIFVLAISKCP-LPEYKEKEEKPDAELCNKTEKEEKNILKHPYILLFLSFLFFTISSGTEGFFISQTYTFGICGPHKMMPTKAASLTTVYFSCFLVGRLSGVFLASRLQPHVMI 694
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864310|gb|GAXK01093252.1| (TSA: Calanus finmarchicus comp721368_c0_seq9 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 6.453e-8 Identity = 31/103 (30.10%), Postives = 50/103 (48.54%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSL-YGVQSIAWPFLIGGIFTAFT 132 +++ ++ +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + I WPFLI F FT Sbjct: 271 NSAFTVFMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFT 567
BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Match: EMLSAP00000000387 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1061:189630:200459:-1 gene:EMLSAG00000000387 transcript:EMLSAT00000000387 description:"maker-LSalAtl2s1061-augustus-gene-2.3") HSP 1 Score: 370.933 bits (951), Expect = 5.855e-132 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG Sbjct: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold948_size77650-snap-gene-0.12 (protein:Tk08296 transcript:maker-scaffold948_size77650-snap-gene-0.12-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 106.686 bits (265), Expect = 5.311e-29 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 0 Query: 5 MCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGK--GNSSDSSG---NMPHFEIDSLYGVQSIAWPFLIGGIF 128 M + G+ +++PF F + R Q +GA++T D+SL++Y MGPIKSRPFTNA+HA G+G T L RPFLP + +++ GN++ SG + P +I+ L+G+Q IAWPF+ G + Sbjct: 90 MSLTGVGMIILPFTATFAFLVTIRALQYTLLGAYITGDSSLLVYTMGPIKSRPFTNALHACVGIGFLAATFLVRPFLPSEANALKNQAEVCFGNTTAPSGGASDEPRNDIEYLWGLQKIAWPFVFSGAW 218
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold17_size721972-snap-gene-6.22 (protein:Tk09984 transcript:maker-scaffold17_size721972-snap-gene-6.22-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 57.7658 bits (138), Expect = 2.311e-10 Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 130 AFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRP----RNMIYICLLFAFV 186 FTFG+CGPL L P+ A++ID +NGGFM GR + +A I+ P ++ I +CL+ + V Sbjct: 284 EFTFGLCGPLHLNPSEAVVIDKSFNGGFMVGRFFGMFVAHIVPPKLLLKSSIVMCLMLSAV 344 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000387 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000387 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000387 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000387 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1061:189630..200459- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000387-683153 ID=EMLSAG00000000387-683153|Name=EMLSAG00000000387|organism=Lepeophtheirus salmonis|type=gene|length=10830bp|location=Sequence derived from alignment at LSalAtl2s1061:189630..200459- (Lepeophtheirus salmonis)back to top Add to Basket
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