EMLSAG00000000387, EMLSAG00000000387-683153 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592864315|gb|GAXK01093247.1| (TSA: Calanus finmarchicus comp721368_c0_seq4 transcribed RNA sequence) HSP 1 Score: 52.7582 bits (125), Expect = 9.272e-8 Identity = 31/103 (30.10%), Postives = 50/103 (48.54%), Query Frame = 0 Query: 42 DASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSS-----------DSSGNMPHFEIDSL-YGVQSIAWPFLIGGIFTAFT 132 +++ ++ +GP +S P+ A++A GVG G+++ RPFLP +D +CG + GN+ +D L + I WPFLI F FT Sbjct: 677 NSAFTVFMLGPERSAPYMQALNAFVGVGFMFGSLIVRPFLPEQEED-SSICGSIKEEMMTNFSFTGEVNEEGNV---YVDELVENIPDIVWPFLIILSFHIFT 973 HSP 2 Score: 38.5058 bits (88), Expect = 8.353e-3 Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0 Query: 127 IFTAFTFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMI 177 I +TFGICGP + P A + + Y F+ GR+ V LA ++P MI Sbjct: 332 ISQTYTFGICGPHKMMPTKAASLTTVYFSCFLVGRLSGVFLASRLQPHVMI 484
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592820817|gb|GAXK01133751.1| (TSA: Calanus finmarchicus comp1406489_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 2.914e-4 Identity = 26/101 (25.74%), Postives = 52/101 (51.49%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSS 101 +G + + G++ ++P+ + M + F F G+ TA L++ S P+ +A+H G+G FL +++RPFL + D E + N++++S Sbjct: 505 LGCTLIVMGVTNALLPYCPSLLAMYVCVFIGGFGSGSLDTAGNVLLLDIWKGRDSGPYMHALHFTFGIGAFLAPVISRPFLVNAADVDEHQVDEENTAENS 807
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592921760|gb|GAXK01036615.1| (TSA: Calanus finmarchicus comp903773_c1_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 4.707e-4 Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 0 Query: 123 LIGGIFTAF-----TFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICL 181 L GGI F TF +CGPL L+ +A + DS Y+ G GR+ S+ L+ + P ++ +C+ Sbjct: 368 LSGGIVRVFQSMSMTFAMCGPLQLESHSAALTDSFYSSGMCFGRLASILLSTAVLPSTLLAVCM 559
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592921759|gb|GAXK01036616.1| (TSA: Calanus finmarchicus comp903773_c1_seq2 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 5.288e-4 Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 0 Query: 123 LIGGIFTAF-----TFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICL 181 L GGI F TF +CGPL L+ +A + DS Y+ G GR+ S+ L+ + P ++ +C+ Sbjct: 368 LSGGIVRVFQSMSMTFAMCGPLQLESHSAALTDSFYSSGMCFGRLASILLSTAVLPSTLLAVCM 559
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Match: gi|592921758|gb|GAXK01036617.1| (TSA: Calanus finmarchicus comp903773_c1_seq3 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 6.265e-4 Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 0 Query: 123 LIGGIFTAF-----TFGICGPLALQPXXXXXXDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICL 181 L GGI F TF +CGPL L+ +A + DS Y+ G GR+ S+ L+ + P ++ +C+ Sbjct: 368 LSGGIVRVFQSMSMTFAMCGPLQLESHSAALTDSFYSSGMCFGRLASILLSTAVLPSTLLAVCM 559
BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Match: EMLSAP00000000387 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1061:189630:200459:-1 gene:EMLSAG00000000387 transcript:EMLSAT00000000387 description:"maker-LSalAtl2s1061-augustus-gene-2.3") HSP 1 Score: 370.933 bits (951), Expect = 5.855e-132 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 Query: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG Sbjct: 1 MGSLMCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGKGNSSDSSGNMPHFEIDSLYGVQSIAWPFLIGGIFTAFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRPRNMIYICLLFAFVG 187
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold948_size77650-snap-gene-0.12 (protein:Tk08296 transcript:maker-scaffold948_size77650-snap-gene-0.12-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 106.686 bits (265), Expect = 5.311e-29 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 0 Query: 5 MCIAGLSTLVIPFLVNFPTMGLFRFTQCFCIGAFMTADASLIIYXMGPIKSRPFTNAIHAICGVGCFLGTILARPFLPPSNDDMEDLCGK--GNSSDSSG---NMPHFEIDSLYGVQSIAWPFLIGGIF 128 M + G+ +++PF F + R Q +GA++T D+SL++Y MGPIKSRPFTNA+HA G+G T L RPFLP + +++ GN++ SG + P +I+ L+G+Q IAWPF+ G + Sbjct: 90 MSLTGVGMIILPFTATFAFLVTIRALQYTLLGAYITGDSSLLVYTMGPIKSRPFTNALHACVGIGFLAATFLVRPFLPSEANALKNQAEVCFGNTTAPSGGASDEPRNDIEYLWGLQKIAWPFVFSGAW 218
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold17_size721972-snap-gene-6.22 (protein:Tk09984 transcript:maker-scaffold17_size721972-snap-gene-6.22-mRNA-1 annotation:"sodium-dependent glucose transporter 1") HSP 1 Score: 57.7658 bits (138), Expect = 2.311e-10 Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 130 AFTFGICGPLALQPAAAIIIDSCYNGGFMCGRIVSVGLAGIIRP----RNMIYICLLFAFV 186 FTFG+CGPL L P+ A++ID +NGGFM GR + +A I+ P ++ I +CL+ + V Sbjct: 284 EFTFGLCGPLHLNPSEAVVIDKSFNGGFMVGRFFGMFVAHIVPPKLLLKSSIVMCLMLSAV 344 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000387 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000387 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000387 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000387 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000387 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000387 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000387 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1061:189630..200459- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000387-683153 ID=EMLSAG00000000387-683153|Name=EMLSAG00000000387|organism=Lepeophtheirus salmonis|type=gene|length=10830bp|location=Sequence derived from alignment at LSalAtl2s1061:189630..200459- (Lepeophtheirus salmonis)back to top Add to Basket
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