EMLSAG00000000422, EMLSAG00000000422-683188 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000422
Unique NameEMLSAG00000000422-683188
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Match: gi|592955870|gb|GAXK01002686.1| (TSA: Calanus finmarchicus comp1011463_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.815e+0
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 0 
Query:  108 IFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKIL 182
              QN+  EK  S    FD  +++   + +  K IFD      Q   +  D  D+L    F   PVI+  N+D+ L
Sbjct:  872 CLQNLDAEKIVSQVRVFDHEDNVMQNAPNPWKPIFDGHFLSTQVPFLSSDPLDILEDGNFSDIPVIIGENKDEGL 1096
[Close]
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Match: gi|592955871|gb|GAXK01002685.1| (TSA: Calanus finmarchicus comp1011463_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.901e+0
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 0 
Query:  108 IFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKIL 182
              QN+  EK  S    FD  +++   + +  K IFD      Q   +  D  D+L    F   PVI+  N+D+ L
Sbjct:  959 CLQNLDAEKIVSQVRVFDHEDNVMQNAPNPWKPIFDGHFLSTQVPFLSSDPLDILEDGNFSDIPVIIGENKDEGL 1183
[Close]
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Match: gi|592774249|gb|GAXK01180319.1| (TSA: Calanus finmarchicus comp1632033_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 4.522e+0
Identity = 17/35 (48.57%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:   25 SVFINPDSPFLVKQTANGEILLRKSPTFVSSRPTF 59
            SVFI+     L  +T N +ILLR SP+  S+RP F
Sbjct:  110 SVFISMLPTCLTSKTLNWKILLRSSPSI*STRPNF 214
[Close]
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Match: gi|592955872|gb|GAXK01002684.1| (TSA: Calanus finmarchicus comp1011463_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.127e+0
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 0 
Query:  108 IFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKIL 182
              QN+  EK  S    FD  +++   + +  K IFD      Q   +  D  D+L    F   PVI+  N+D+ L
Sbjct:  872 CLQNLDAEKIVSQVRVFDHEDNVMQNAPNPWKPIFDGHFLSTQVPFLSSDPLDILEDGNFSDIPVIIGENKDEGL 1096
[Close]
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Match: gi|592955873|gb|GAXK01002683.1| (TSA: Calanus finmarchicus comp1011463_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.170e+0
Identity = 22/75 (29.33%), Postives = 33/75 (44.00%), Query Frame = 0 
Query:  108 IFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKIL 182
              QN+  EK  S    FD  +++   + +  K IFD      Q   +  D  D+L    F   PVI+  N+D+ L
Sbjct:  959 CLQNLDAEKIVSQVRVFDHEDNVMQNAPNPWKPIFDGHFLSTQVPFLSSDPLDILEDGNFSDIPVIIGENKDEGL 1183
[Close]
BLAST of EMLSAG00000000422 vs. L. salmonis peptides
Match: EMLSAP00000000422 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1067:99048:103528:-1 gene:EMLSAG00000000422 transcript:EMLSAT00000000422 description:"augustus_masked-LSalAtl2s1067-processed-gene-0.2")

HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0 
Query:    1 MNINLQAMMFIIMMGLFHFANSKTSVFINPDSPFLVKQTANGEILLRKSPTFVSSRPTFNALNELLDLYLNNQTFINSRTSTERPPYYPIFSSTTHGPFFTFSSTDFIFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKILDSSDSMNTIIPGATISSTSTMTTSTTRRGVISSAFSLAPLIXPDSIEIVPEITTAKTTTTTTTTTTTTTMMTTTTTEPIITTESSQFGLSSIFSMISHQMEFISNSFLQTKSSTTSSESALTQSSTSNNGNGLDASAALIPAVLGGVIGVGLFVSELAKSSSTSASKKRRRGGGPPRRTYAQTKAVEFLRKQQQEKQDKRHKKPFLPRQRKSSNALRRSGITQFVASDARRNPMEQGGDNFYYDYFRSDSFVNTN 437
            MNINLQAMMFIIMMGLFHFANSKTSVFINPDSPFLVKQTANGEILLRKSPTFVSSRPTFNALNELLDLYLNNQTFINSRTSTERPPYYPIFSSTTHGPFFTFSSTDFIFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKILDSSDSMNTIIPGATISSTSTMTTSTTRRGVISSAFSLAPLIXPDSIEIVPEITTAKTTTTTTTTTTTTTMMTTTTTEPIITTESSQFGLSSIFSMISHQMEFISNSFLQTKSSTTSSESALTQSSTSNNGNGLDASAALIPAVLGGVIGVGLFVSELAKSSSTSASKKRRRGGGPPRRTYAQTKAVEFLRKQQQEKQDKRHKKPFLPRQRKSSNALRRSGITQFVASDARRNPMEQGGDNFYYDYFRSDSFVNTN
Sbjct:    1 MNINLQAMMFIIMMGLFHFANSKTSVFINPDSPFLVKQTANGEILLRKSPTFVSSRPTFNALNELLDLYLNNQTFINSRTSTERPPYYPIFSSTTHGPFFTFSSTDFIFQNIKREKDTSNALRFDLNNDIPSTSSSNLKEIFDSLNTKKQTDRIIVDRPDLLTISEFLPGPVIVTNNQDKILDSSDSMNTIIPGATISSTSTMTTSTTRRGVISSAFSLAPLIXPDSIEIVPEITTAKTTTTTTTTTTTTTMMTTTTTEPIITTESSQFGLSSIFSMISHQMEFISNSFLQTKSSTTSSESALTQSSTSNNGNGLDASAALIPAVLGGVIGVGLFVSELAKSSSTSASKKRRRGGGPPRRTYAQTKAVEFLRKQQQEKQDKRHKKPFLPRQRKSSNALRRSGITQFVASDARRNPMEQGGDNFYYDYFRSDSFVNTN 437
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000422 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000422 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592955870|gb|GAXK01002686.1|3.815e+029.33TSA: Calanus finmarchicus comp1011463_c0_seq4 tran... [more]
gi|592955871|gb|GAXK01002685.1|3.901e+029.33TSA: Calanus finmarchicus comp1011463_c0_seq3 tran... [more]
gi|592774249|gb|GAXK01180319.1|4.522e+048.57TSA: Calanus finmarchicus comp1632033_c0_seq1 tran... [more]
gi|592955872|gb|GAXK01002684.1|5.127e+029.33TSA: Calanus finmarchicus comp1011463_c0_seq2 tran... [more]
gi|592955873|gb|GAXK01002683.1|5.170e+029.33TSA: Calanus finmarchicus comp1011463_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000422 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004220.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1067:9904... [more]
back to top
BLAST of EMLSAG00000000422 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000422 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000422 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000422 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1067supercontigLSalAtl2s1067:99048..103528 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1067-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000422 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000422EMLSAT00000000422-696269Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1067:99048..103528-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000422-683188 ID=EMLSAG00000000422-683188|Name=EMLSAG00000000422|organism=Lepeophtheirus salmonis|type=gene|length=4481bp|location=Sequence derived from alignment at LSalAtl2s1067:99048..103528- (Lepeophtheirus salmonis)
ATGAACATCAACTTACAGGCCATGATGTTCATAATAATGATGGGCCTCTT
CCATTTCGCCAACTCCAAAACCTCAGTATTCATAAATCCCGACTCTCCTT
TCCTAGTCAAACAAACTGCAAACGGAGAGATTTTACTAAGAAAATCCCCA
ACATTTGTCTCCTCTCGTCCTACATTCAACGCCTTGAATGAACTTCTAGA
CCTATATCTAAATAATCAAACCTTCATCAACTCCCGAACCTCAACTGAGC
GACCGCCCTATTATCCCATCTTTAGCTCCACAACCCATGGTCCTTTCTTT
ACGTTCTCCTCTACAGATTTTAGTCAGTCTCATAGAAAGGATCCATCATC
TCATGATAAAATCAAAAAGCCTCTTTCAAATATGATCCCGAACAATAATA
ATTATTCGCGCCTAAAGCCCTTTCAAGTCGTTACATTAAGTCCATACAAA
AACATCATTGACAATTCTAGGAATAAATGGCCTCTCTATAATTTGTCATC
GTTTAAAGGAAATAACAAAGTAAGGTTTTAACATTTTTATCCTTGGATTT
ATATTTTATAAATGAATTCTTAAACTCGATTTTTGGGTGAATAATTGAGA
CTTTCAGGAGTGCACTTATATGGATTTTAATAGCAATTCAATTCAATTTC
TTTAAATTTGAAAAATAAATGAGGTTTTATGGGCTCAAATTATGTCGAAA
TGTAACTTTCATTGCAAATATTTAGAATTAAATTATTTTAAAACAGTCTG
AACAATCGTTTTCTTTTTACATTATGTCCGAGGCGTCCAGAATTTTTTTT
ATAAAAACCATGAAATGTACAATTTTTGTGGAAATTGACTTAAACTTAAA
GTAAAATTCTAAATATAAGGGTCATAATGCAGATTATCAATTAATATTAA
AAAAAACACTAAAATCAAAGTTTATCAATAATTTATTCTCATTAATTTAA
AAACAAAGTGGAGAAACTTGCTTGTTAGCTTAAGTAGATTTATGGTTCTA
GTGATACATTTCTTCCATCGTAAGATGTCTTTATTTATAATAGCACAACT
GACGTCACTATATCATTTTATGCCATTTTCCCTTTTGCCGTGTACAACTT
TTCTTCCCTTCTCAGAATTTGCCTTGTTAATTCTGTTAAAAGAAAGAATT
CATGGAATTCATAACTCCGTAGTTTGTACAAAGTAATACTAAACACTCTT
AGTGGACAAAAAAATTGTCCCTAAGAACAAATTCTTTATACAAATATTGA
TCACATGGTATTCCAGAGCCGTCCGCAGGGGCTGTAGACCCCTCCAAATT
AAGATTTTTTTTCATTTTATTATAATTTTTTTTGGTATGTATAAAAAAGT
TATGCTCGAAAATTGAGGTAATTTTTATTTTATGAAATGATTTATTTTCA
TATAAAAATGTAATTCAGCTAAATTATGCAGCAGAGAAAAAAATATAATA
TTAGATTTAATCCTTAAATTTTTGACCGAAAATTTAGTTTTTTTGTCAAC
AGCTGGGAGTTTTTATATTATTTTTCCAAAAGTTTAACTTTTTTTAAAAG
CTATGGAGTTTGAAGTCTTTATCTAAAAGACATTATTTTTTTTGTGAACA
GCTGTCAATTTATTTTTCCGGAAAATTTAATATTTGAAATTTAATTTTTC
AATTTTTTTTTTCAAAATAATTACAAAATCAAGATCCCTCAAAATATAAT
CCTGTAGACGCCCTTATTAGGTACTAATGGGAATACCCAGCATTGCTCGG
AGTTATTTGGCGTTGGCAAAATGATAGACAGACTTTACTTTAATAATATA
GATAGTACGTACTCCCTTTTTCTTTTCTTTTTTAATTCTGAGCTTCAGCT
ACACACGCTCGTTGCTACATTGTTATTTCTTAGATTTTAAAAAAATAACA
CATTTATAAGATATTAAGCAACCACTTAAAAAATGAGCCCTTCACAGACC
AACACACAAACTTTGCTTTATTAGTATAGATTTATAAAAAATAACATCTA
AAGTTAACATTGTTATTAATTAGATCGAGTAGTCACGCAGTTCTAAACTA
TTAGGCAAACACTCAAAAATTAGGATTCGACCAACATTCAGACAAACTTT
TGCTTTATTAATGTAGATAACATCATGTTTATAGATCAAAACATTTTATT
TCGTCTCTCCTGAACAATTTTTAAATGGCCTGAGAGTACATTTTTCTTCT
AAATAAGGAAGCGTTATGTCTTACAGTTTGATTTTGCCACATGTTCATTT
AATTAAGCAGATACCTTATTATTCCTAATGTTTATTTCATAATTTATGAC
GATTTCCTCTCTCTTCGGTTTTAAGTCATAGGATGAGATAAAAGTATGTA
CTATACACTACGCATATTTAGACATAATTTGTGGTTGGATGATAATATCT
TACAAAAGACTCACTTGTTAATGATTGCATATATTTTTTACTAATTCATG
TAGTGTATAATACATAAATTAGTACAAAATATATGTATAATACATCTTCA
CTGAAGGGTTTTCAGAATCTTTCTTTTTTTAATTTAAAAGGTCACTTGTT
TGGAAAACTGATTGACTACCATTTTGTCACGTAGTCCCCTCTTAGTTCCC
ATTTATCAAAATGGACGTGAAGGATACATTATGCTATGAAGCGTGAAATT
TATAGTCATTCTTTTTATTAATGACATAATTTGASGAGACGAGACAGACT
GTGTGTGTATATATTCCTATGTCGTCATAACAATAACATTCATTTTTATA
CAGCATAAAAAATTGCCATAACCAAAGTAAATAAAAGTATTCAAAATCGT
TCATATTTCAATTTTTCTTTTGTTACACACTTATATATGTGGCCGTCAAC
ATAAAAACAACATAGAATGATTTTACTCAAAATTGAGCGTGGATTACATT
TGTATTCTTAGATGAATTATTCTCTGTTTATATCAAAAAATTATTCATAT
TAACCCTTTTGAGACGCCGTAAATTGCACAGACGTAGGCTAAATGGATCG
TCAAAATAAAAGAATGAGAAATCTTAAAATCAATTAAAAGCTCTAAATTA
TAGCCTAAATTCTTACGTATCTAACTCTTCCAACAAATTTGAAGTCGATC
CCATAATTAACCGAAACTTTCACTTTAAATAGCTCATATTGAGCCTCACG
ATAAACGAATAAGAGATTAATTGATTTGATTTGAAGGCCCATTTGAGGGT
TATTATAACTATTTTAAACTAAAGATAACATTCTTTTCTATTTAACTTAT
ATCACAAACTTGAATACCAAGCCTATAATTGAATCAAATGAAATATTGGG
CTGTATTTATATATATGAAGTAAATAAATAAATTGGGATTTTTTTCAATT
TCTGGACTTTTACTCAAGATTGTTTTATGTTAATGTGCCACATATTTATA
ATTATATTGATTTTTCATTTCTTCCCATTTTATTTTTTAGAATCCATTTA
AAAGTCGACCTGATCAAAGCTCTGACTATTTGAGTTCAGTCTTCCAGAAC
ATAAAGAGAGAGAAGGACACTAGTAATGCTCTGAGATTTGATTTAAATAA
CGACATTCCCTCTACAAGTTCCTCAAACTTAAAGGAAATTTTTGATTCGT
TAAACACCAAGAAACAAACGGACCGCATCATTGTAGATCGACCAGATCTT
CTAACTATTTCTGAATTTCTTCCTGGGCCTGTTATTGTAACCAATAATCA
AGATAAAATCCTAGACAGTTCGGATTCTATGAACACAATTATCCCAGGAG
CAACGATATCAAGTACTTCAACCATGACTACATCAACCACAAGGCGAGGA
GTAATTTCATCGGCGTTTTCTCTGGCTCCACTCATCAYCCCAGATTCTAT
AGAAATTGTACCAGAAATAACAACAGCAAAAACAACTACTACTACCACCA
CAACTACAACAACAACAACAATGATGACGACAACTACAACTGAGCCAATC
ATAACGACCGAATCCTCTCAATTCGGTTTATCTAGTATATTCTCTATGAT
TTCTCATCAAATGGAGTTCATAAGCAATAGCTTCCTTCAAACAAAGAGCT
CAACTACAAGTAGTGAGAGCGCTTTGACTCAAAGCTCTACTTCAAACAAT
GGAAATGGCCTTGATGCTAGTGCTGCTTTAATCCCCGCTGTCTTAGGAGG
AGTAATTGGGGTGGGACTATTTGTGTCTGAGCTGGCAAAAAGTTCATCCA
CTAGCGCATCTAAAAAGCGACGAAGAGGAGGTGGCCCTCCGAGACGAACC
TATGCTCAAACAAAGGCTGTTGAATTTTTGAGGAAACAGCAACAAGAAAA
ACAGGACAAACGACACAAAAAGCCCTTTCTTCCAAGGCAAAGGAAATCTT
CGAATGCTCTAAGGCGCTCTGGGATCACCCAGTTTGTTGCTTCTGATGCA
AGGCGTAATCCTATGGAACAAGGTGGGGATAATTTCTATTATGACTACTT
TAGGTCGGATTCATTCGTGAATACGAATTAG
back to top
Add to Basket