EMLSAG00000000425, EMLSAG00000000425-683191 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000425
Unique NameEMLSAG00000000425-683191
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000425 vs. C. finmarchicus
Match: gi|592935233|gb|GAXK01023320.1| (TSA: Calanus finmarchicus comp115153_c5_seq3 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.626e+0
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    4 FWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSII 46
            FW  S +L  ++S PA+ + +    R  RAGLV L   +W  +
Sbjct:  358 FWKKSLVLYAQVS-PAVCLAMAATNRSSRAGLVKLFTSFWKYV 483
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BLAST of EMLSAG00000000425 vs. C. finmarchicus
Match: gi|592935234|gb|GAXK01023319.1| (TSA: Calanus finmarchicus comp115153_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.668e+0
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    4 FWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSII 46
            FW  S +L  ++S PA+ + +    R  RAGLV L   +W  +
Sbjct:  431 FWKKSLVLYAQVS-PAVCLAMAATNRSSRAGLVKLFTSFWKYV 556
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BLAST of EMLSAG00000000425 vs. C. finmarchicus
Match: gi|592935235|gb|GAXK01023318.1| (TSA: Calanus finmarchicus comp115153_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.685e+0
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    4 FWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSII 46
            FW  S +L  ++S PA+ + +    R  RAGLV L   +W  +
Sbjct:  466 FWKKSLVLYAQVS-PAVCLAMAATNRSSRAGLVKLFTSFWKYV 591
[Close]
BLAST of EMLSAG00000000425 vs. L. salmonis peptides
Match: EMLSAP00000000425 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:100845:104517:1 gene:EMLSAG00000000425 transcript:EMLSAT00000000425 description:"snap_masked-LSalAtl2s1068-processed-gene-1.14")

HSP 1 Score: 240.35 bits (612), Expect = 9.616e-83
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MVGFWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSIILCAKFLAFSLSLVGCRHLLFLLQELHVLFHAQQESNNLERTRKLEFTGNEFIDRRNCFIFVLRNYKESVND 117
            MVGFWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSIILCAKFLAFSLSLVGCRHLLFLLQELHVLFHAQQESNNLERTRKLEFTGNEFIDRRNCFIFVLRNYKESVND
Sbjct:    1 MVGFWPLSAMLSFRLSLPAMFIPLTMGEREPRAGLVDLGEEYWSIILCAKFLAFSLSLVGCRHLLFLLQELHVLFHAQQESNNLERTRKLEFTGNEFIDRRNCFIFVLRNYKESVND 117
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000425 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000425 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592935233|gb|GAXK01023320.1|7.626e+034.88TSA: Calanus finmarchicus comp115153_c5_seq3 trans... [more]
gi|592935234|gb|GAXK01023319.1|7.668e+034.88TSA: Calanus finmarchicus comp115153_c5_seq2 trans... [more]
gi|592935235|gb|GAXK01023318.1|7.685e+034.88TSA: Calanus finmarchicus comp115153_c5_seq1 trans... [more]
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BLAST of EMLSAG00000000425 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004259.616e-83100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1068:1008... [more]
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BLAST of EMLSAG00000000425 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000425 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000425 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000425 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1068supercontigLSalAtl2s1068:100845..104517 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1068-processed-gene-1.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000425 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000425EMLSAT00000000425-696272Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1068:100845..104517+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000425-683191 ID=EMLSAG00000000425-683191|Name=EMLSAG00000000425|organism=Lepeophtheirus salmonis|type=gene|length=3673bp|location=Sequence derived from alignment at LSalAtl2s1068:100845..104517+ (Lepeophtheirus salmonis)
ATGGTGGGCTTTTGGCCACTGAGTGCAATGCTCAGCTTCAGACTTTCACT
CCCAGCGATGTTCATTCCACTCACAATGGGGGAACGGGAGCCACGAGCAG
GGCTTGTGGACTTGGGCGAAGAGTATTGGTCCATCATTTTGTGTGTGCGT
CTTTACCCAGACACGGAGTTGTTGTAGTCCTCTTCCACTTCTTCCTCTAG
AATCTCGAGGGTAATGTCGATTTCCGGATTATAAAAGAGAAACACGCGCG
AGAGGAGCAAGGACACAGACACCAACAGAGTTAACTCCCGTCGAACTCGA
TAGCCCAGGTCAAGAAGCTAATAAATAATCATTAGAAATCACAATACTAT
TTTAACATTCACAAATAACAACAATATTTAGAAATTCAGAGCAATACCCG
TAAAAGGGACCGTTGAAATCCTTCTCCTAACCCCAAAGATCCACTCAATA
GCCCATAATTCCTCGGCATCCCATTCGTTCTTGGATTATTAGCAGCGTCT
ATCCTCAAAACCTTGATACTTTCTTTCTTTTGTAACTTAGATTTTAATAA
ATAAAAAATATATAATATTAATAATAATTTTCTGGACAACAAATCGTACG
TACATAGACAAATTTTAGCTGGCTGATATTATTTGAGTGTATTACTCATC
AACAGCTGTAATGACGTCATTACTCTTAAAAAACAATAACAAGGCTAGCC
AGCAACGATTTTCAGTGAGTTCACTCGAAATAAATTAGTTTAACGAATGA
CGGCATTGGGATCCTAAATATTAGAGTATAACGATGGAGAATAATTTAAA
AATCTAAATATAGCGTAAATAAATAAGGATTCAATTGTGGAAAAAATTAA
ATTACTACATTTATTACTTTTTTTGAATTACATTTACCCAAAGAAATGCC
CCCAATGACGTCACCAAAAAGAGAGAGTTAATTAATAAATCTGCTCTGTT
TGCCCTACAATTTCCTTGTTGTTAAAAAAAAACCTTACTCCCCTCTCAAT
TTATTCAACGCCTAATAATGAATAGGGGAAATCGTCAAACTTTATATTTT
CTCAAAATGTTTTCATTTGTGGTCCGTCAACACAAAATCAAGCTGGAATG
ATTTTTCTCAAATTTTGACTGTGGATACAATTTATCGCCAATTTCTATAA
ACAAATTATTCTTATTAACCCTTAGGATGTGTCATAAATTGCACTCTTTC
AAGAAACGCAAATTTATTATCACAATAAAAGAATGCAAAATTAATAGATT
TTATTTAAAAAGGTATATTGGGGCCAATAAAAGTCACTTAAATAAAATAA
AGGTCATAAACTATAGCTTGAATTATTGAGTAGCTTAATTCGCCCTACAA
ATTAGAAGTCAAAGCCTATAATTGACTCAAATATATCTGTTTAATATTGG
ACTTTATATATCGACAATGTAAAAAAAAAATGGACTTTCTCCTCTTCTTG
ATTTAGGTTCAAGATTATTTTATGTTGACACACCACGTGTACAGTTTTCA
TTCGACCCAAAATTAAGCCTAGTTTAATTTATTATCTAGAAATTTTATGT
ATCCGGATTATAAAGTTTAATTTTATGTAATATATATGATTTGCTTGATC
CTGAGAATAAATTTCAGCTTATTAATAAGATTAATTTATATACATTAATA
TCCAAAAAATTCATTAATAATATAGCGGCTGACACATTAACAAATTTAAT
GTGACATTTAATCTCTCCCAGTCTTCCCTACTTGAAAATATTTTCCCCNA
TAAATTATATAAAATATTGATTTTATTAAAATAATAACTAATCATAATTT
ATTATGAGTTTAAACAATAAATTTGCATTATGAAATTATATATATTTATT
TAGCTATGATTCATTATCACACATTTCTTCCTCAATCAAATCATTATCAC
AATTATAGTATAGATGCGCACTTGAATCTTCATTATAATAATCGACGATG
TTYGAGCCTTTACTGAGCCTGATTTTACTTTTTTTAGGCAAAGTTCTTGG
CTTTTTCTTTGTCATTGGTAGGGTGTAGACATCTCCTGTTTCTTTTACAA
GAACTTCATGTTTTGTTTCATGCTCAACAGGAATCAAATAACTTGGAGCG
TACTCGGAGTAAATTTCATTCTGTTCATGCCATTTGAGATGGTTTTTAGG
ATTATTTTTTTTAAAGGATTTGCAGGATTTTGTCTWAAAATCRGGAGAAG
GMAATACAAGMCCCATAGATTCACTATCCGATAAATCTTCAGAAGTGCAG
AGATAAGTTTGACCACTATAGCCACTTGGTAAGATTTCCGAATATTCATC
AACAACTGAGTAATCCTCTTTAGATGTCAACGAATCCCTAAAGTTATAGA
AAACACAACATTTCCATGGGTATTTTAACTCTCAGTACTATTACCTATCC
TTCAACAATTTTTTCTTCCTATCTTTTTTGCTCTTAAACAATTTTGAAAA
CAGTTTGGATAAATTGGAAACTTGTTTGGTAACATCAGATTCTGAACTTG
TTCTTGACTTAATTCTTCCATTTTTTCGAGAAACTGATCGTTTTAAGCTT
AAACTTTTGTTAGCATGGAGTGATAGAGCCTGCAAATTATNATTWTTCTW
CTTGTTAATTAARAAAATTATTATAATCATTCACCCCCCCCCCGTTTGTA
TTTATATGTNGGAGTGATAGAGCCTGCAAATTATCATTATTCTACTTGTT
AATTAAGAAAATTATTATAATCATTTCACCCCCCCCCCCGTTTCGTATTT
ATATMTAATGTACAAGTTACGATTTTGTGCAAGTTCTAATTTCAATTTGT
AAAAGAAAATTGGACTTGTGGTGAGGATAATGCAATAATTGAATATTCCA
TGGATGCTCGATATATTAATGCTGTAATTTTTGATCTTTTTTATGAATAT
TACTTAGTAGTATTCTGTGTCACATTATTAGAATCAAAGCCCCTTAGTTA
TTTTATTATTCGTAAATAAAAAACAACCAAATGGATAAATCCAGGTAGTT
GGTAATTAAAATGAGTGATGATGTAATTAAATAAAGCGTAATAAGACGTA
TAAATTATAACAACTTGTACAAGACATAATATAAATACAATATATGTGGA
AAAGATAGAACGACTTACTTTTGAAGTTGTCTTAATGTGTGTACGAACAT
AATTGTTAAATTCATCCAAATCAAAATCAAAACTATTAAGGATAATTTCC
CCCTTACCAAAGGGGCTCCTACTCCCAAGGCAGAAGAAATAATATTTTCG
CCTGAGAAAATAACAATTTGTTTATTATAGTAGACTAGTTAGGTTGCTCA
GTTTTATTTCATATACTTATTGATTGATCTGATTCCATAGTCTTTTATTA
GAGAACGATCAATGGTCACTCTTTTTTCTTTGGATTCAAATACAAGACTT
TTTAAAAAGGTGGAAACCCTAAATTTATACACTCCTGCAAGCAAATCCCA
CTGATTCTCATAGTCTGAGCCTAACACTTCCACTGTAATGTAGTCTTCAT
TCATGGCTCGACTGATCATTTGAGACAATTAACTATTTATCAGCTTTTAT
ATGAATATACTTAATATATAAATATACTATGTAGAATTGGAGTTCACAGG
AAATGAATTTATTGATAGACGGAATTGTTTTATTTTTGTTTTAAGGAATT
ACAAAGAATCTGTTAATGATTAG
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