EMLSAG00000000457, EMLSAG00000000457-683223 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000457
Unique NameEMLSAG00000000457-683223
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933649|gb|GAXK01024904.1| (TSA: Calanus finmarchicus comp579333_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 9.027e-1
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  258 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 428          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933648|gb|GAXK01024905.1| (TSA: Calanus finmarchicus comp579333_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.027e+0
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  234 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 404          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933650|gb|GAXK01024903.1| (TSA: Calanus finmarchicus comp579333_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.177e+0
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  352 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 522          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933646|gb|GAXK01024907.1| (TSA: Calanus finmarchicus comp579333_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.975e+0
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  168 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 338          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933644|gb|GAXK01024909.1| (TSA: Calanus finmarchicus comp579333_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.007e+0
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  177 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 347          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592933645|gb|GAXK01024908.1| (TSA: Calanus finmarchicus comp579333_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.099e+0
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  312 SEQEVVD-PLIESIAQRKLPESHFHHKTDQNESTW-KKKSKSISQVMIDKEENLENGS 367
            S+QEVV  PLI S   + LP ++F    D  E TW K  + ++S   I + +++E GS
Sbjct:  178 SDQEVVAAPLIGSFTTKPLPPTNFKIGPDPFEITWMKSPTPNVSSYKI-RYKSVEEGS 348          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592846178|gb|GAXK01111366.1| (TSA: Calanus finmarchicus comp53366_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 5.258e+0
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 0
Query:  191 INSEKEVHFNIGNEVTVTEPYEMDITKMSKNHGNICNKE 229
            +NS     FN  +E  +T PY  DIT  S+NH +  +++
Sbjct:  521 MNSMSRKTFNFSSEKAITFPYRKDITFPSRNHIDFASRK 637          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592935579|gb|GAXK01022974.1| (TSA: Calanus finmarchicus comp1578537_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.539e+0
Identity = 16/55 (29.09%), Postives = 30/55 (54.55%), Query Frame = 0
Query:  305 EKDIRLYSEQEVVDPLIESIAQRKLPESHFHHKTDQNESTWKKKSKSISQVMIDK 359
            EKDI + ++ E  +P ++ ++  +   +    K  Q +  W+K SK+  QV +DK
Sbjct:  178 EKDISVKAKTEAANPYLQFLSDSRRKANGVPLKLKQLQDDWRKMSKAEKQVHVDK 342          
BLAST of EMLSAG00000000457 vs. C. finmarchicus
Match: gi|592846179|gb|GAXK01111365.1| (TSA: Calanus finmarchicus comp53366_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 5.954e+0
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 0
Query:  191 INSEKEVHFNIGNEVTVTEPYEMDITKMSKNHGNICNKE 229
            +NS     FN  +E  +T PY  DIT  S+NH +  +++
Sbjct:  521 MNSMSRKTFNFSSEKAITFPYRKDITFPSRNHIDFASRK 637          
BLAST of EMLSAG00000000457 vs. L. salmonis peptides
Match: EMLSAP00000000457 (pep:novel supercontig:LSalAtl2s:LSalAtl2s106:521565:523075:1 gene:EMLSAG00000000457 transcript:EMLSAT00000000457 description:"maker-LSalAtl2s106-augustus-gene-5.11")

HSP 1 Score: 866.3 bits (2237), Expect = 0.000e+0
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query:    1 MERSKKRRSSILKSNNNDQTLRSENTVTSRRVSFSRSKNVQEYIIGNPPAESTYVEPYTHDISSLRHTEDEDSKALSLPSSIDDEQSFCNKSIIYSPSHSDEPHGNGTLHQTADMDMTVFMSDTSDDQNDIENLIEQKANESFYKLFKEDSNNTMCHSTRMDMTVFQSNESKEENIESLIQEKXEESFALINSEKEVHFNIGNEVTVTEPYEMDITKMSKNHGNICNKENIHLKYQEETKEKKTSSNNKTLRQSIDMDFTVLKGNGDRGGKRNYNKPNNKNCTINVGVEMDLTTNECVMFEDPIEKDIRLYSEQEVVDPLIESIAQRKLPESHFHHKTDQNESTWKKKSKSISQVMIDKEENLENGSAKKYANPHKKRCLDYEVYDKENLHRTTQKEGNVYKKSIDKTIRQSMDMEFTVTN 421
            MERSKKRRSSILKSNNNDQTLRSENTVTSRRVSFSRSKNVQEYIIGNPPAESTYVEPYTHDISSLRHTEDEDSKALSLPSSIDDEQSFCNKSIIYSPSHSDEPHGNGTLHQTADMDMTVFMSDTSDDQNDIENLIEQKANESFYKLFKEDSNNTMCHSTRMDMTVFQSNESKEENIESLIQEKXEESFALINSEKEVHFNIGNEVTVTEPYEMDITKMSKNHGNICNKENIHLKYQEETKEKKTSSNNKTLRQSIDMDFTVLKGNGDRGGKRNYNKPNNKNCTINVGVEMDLTTNECVMFEDPIEKDIRLYSEQEVVDPLIESIAQRKLPESHFHHKTDQNESTWKKKSKSISQVMIDKEENLENGSAKKYANPHKKRCLDYEVYDKENLHRTTQKEGNVYKKSIDKTIRQSMDMEFTVTN
Sbjct:    1 MERSKKRRSSILKSNNNDQTLRSENTVTSRRVSFSRSKNVQEYIIGNPPAESTYVEPYTHDISSLRHTEDEDSKALSLPSSIDDEQSFCNKSIIYSPSHSDEPHGNGTLHQTADMDMTVFMSDTSDDQNDIENLIEQKANESFYKLFKEDSNNTMCHSTRMDMTVFQSNESKEENIESLIQEKXEESFALINSEKEVHFNIGNEVTVTEPYEMDITKMSKNHGNICNKENIHLKYQEETKEKKTSSNNKTLRQSIDMDFTVLKGNGDRGGKRNYNKPNNKNCTINVGVEMDLTTNECVMFEDPIEKDIRLYSEQEVVDPLIESIAQRKLPESHFHHKTDQNESTWKKKSKSISQVMIDKEENLENGSAKKYANPHKKRCLDYEVYDKENLHRTTQKEGNVYKKSIDKTIRQSMDMEFTVTN 421          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000457 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000457 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592933649|gb|GAXK01024904.1|9.027e-137.93TSA: Calanus finmarchicus comp579333_c0_seq2 trans... [more]
gi|592933648|gb|GAXK01024905.1|1.027e+037.93TSA: Calanus finmarchicus comp579333_c0_seq3 trans... [more]
gi|592933650|gb|GAXK01024903.1|1.177e+037.93TSA: Calanus finmarchicus comp579333_c0_seq1 trans... [more]
gi|592933646|gb|GAXK01024907.1|1.975e+037.93TSA: Calanus finmarchicus comp579333_c2_seq1 trans... [more]
gi|592933644|gb|GAXK01024909.1|2.007e+037.93TSA: Calanus finmarchicus comp579333_c2_seq3 trans... [more]
gi|592933645|gb|GAXK01024908.1|2.099e+037.93TSA: Calanus finmarchicus comp579333_c2_seq2 trans... [more]
gi|592846178|gb|GAXK01111366.1|5.258e+035.90TSA: Calanus finmarchicus comp53366_c5_seq2 transc... [more]
gi|592935579|gb|GAXK01022974.1|5.539e+029.09TSA: Calanus finmarchicus comp1578537_c1_seq1 tran... [more]
gi|592846179|gb|GAXK01111365.1|5.954e+035.90TSA: Calanus finmarchicus comp53366_c5_seq1 transc... [more]
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BLAST of EMLSAG00000000457 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004570.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s106:52156... [more]
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BLAST of EMLSAG00000000457 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000457 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000457 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000457 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:521565..523075 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s106-augustus-gene-5.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000457 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000457EMLSAT00000000457-696304Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s106:521565..523075+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000457-683223 ID=EMLSAG00000000457-683223|Name=EMLSAG00000000457|organism=Lepeophtheirus salmonis|type=gene|length=1511bp|location=Sequence derived from alignment at LSalAtl2s106:521565..523075+ (Lepeophtheirus salmonis)
GTTTGGCTATTTGACGCAAAGTGCTGCCACCTCCTGAATTTTCCTTTCTT TATTTGAAAAGTACATATTTTTGGAGGGATAATATAATTCCAAGTACAAA CGCCCTTAGAAAAGTGAAGGAGGGGATCGGATATTTGAACTTTTGGAGGA CCTACCTACCTGTCTTCATGGAGCGGTCTAAAAAGCGTCGTTCTTCGATT TTGAAGTCCAACAACAATGATCAAACTCTGAGATCTGAAAACACAGTAAC CTCTCGCCGTGTTAGTTTTTCGAGATCTAAAAATGTTCAGGAATATATCA TTGGAAATCCTCCGGCGGAATCCACTTATGTGGAACCCTATACTCATGAC ATTTCTTCACTAAGGCATACAGAAGACGAGGACTCCAAGGCTCTTTCATT ACCTTCATCCATAGGTATTGTATTCATTAGTCATTGATCTGAGAGTTTCA AAGTCCCGTTTTAATGTTGAATAAATCTCCACTCTCTCATTCCAGATGAC GAACAGAGCTTCTGCAACAAATCCATTATTTACTCTCCTTCCCACTCTGA TGAGCCCCACGGGAATGGGACTCTCCATCAAACTGCGGATATGGATATGA CCGTTTTTATGAGCGACACATCCGACGATCAGAATGACATTGAAAACCTC ATTGAACAAAAAGCAAATGAAAGTTTTTATAAACTATTCAAGGAAGACTC TAATAATACCATGTGTCATAGTACACGCATGGATATGACTGTCTTCCAAA GTAATGAATCCAAGGAAGAGAATATCGAAAGTCTTATTCAAGAAAAAKCA GAGGAAAGCTTTGCGCTCATCAACTCTGAGAAGGAAGTTCATTTTAATAT TGGTAATGAGGTAACGGTGACGGAGCCTTATGAAATGGATATAACTAAAA TGAGTAAAAATCATGGAAACATTTGTAATAAAGAAAATATTCATTTAAAA TATCAAGAAGAAACAAAAGAAAAGAAAACATCAAGTAATAATAAAACTTT AAGACAGTCCATAGATATGGATTTCACTGTTTTGAAGGGAAATGGAGACA GAGGCGGAAAGAGAAATTATAATAAGCCCAACAATAAAAATTGTACCATT AATGTGGGCGTTGAAATGGATTTGACGACTAATGAATGTGTTATGTTCGA GGACCCTATTGAAAAAGATATTCGTTTATATTCTGAACAAGAAGTTGTTG ATCCCTTGATTGAAAGTATAGCACAAAGAAAGTTACCAGAATCGCATTTT CATCATAAAACGGATCAAAATGAATCTACTTGGAAAAAGAAGAGTAAAAG CATATCACAAGTTATGATAGACAAAGAAGAAAATTTAGAGAATGGATCAG CAAAGAAATATGCAAATCCGCATAAAAAGAGATGTTTGGATTATGAAGTT TATGATAAAGAAAATCTACATAGAACAACTCAAAAAGAAGGAAATGTATA CAAAAAATCAATTGATAAAACTATAAGACAATCTATGGACATGGAATTTA CTGTTACTAAT
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