EMLSAG00000000487, EMLSAG00000000487-683253 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000487
Unique NameEMLSAG00000000487-683253
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592857647|gb|GAXK01099915.1| (TSA: Calanus finmarchicus comp253431_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 5.261e-4
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 0
Query:  152 RVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVH 195
            RV V GNCCW  Y  + FRG+  S  PG       +VKSI+K+ 
Sbjct:  288 RVVVTGNCCWRLYSSRLFRGRPLSLGPGATQVGVGMVKSIKKLE 419          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592929950|gb|GAXK01028595.1| (TSA: Calanus finmarchicus comp468108_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 7.874e-3
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0
Query:  157 GNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKV 194
            GNCCW  +  KRFRG+  + +PG        VKSI+K+
Sbjct:   54 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKL 167          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592929951|gb|GAXK01028594.1| (TSA: Calanus finmarchicus comp468108_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.330e-2
Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0
Query:  157 GNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKV 194
            GNCCW  +  KRFRG+  + +PG        VKSI+K+
Sbjct:   54 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKL 167          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592931040|gb|GAXK01027513.1| (TSA: Calanus finmarchicus comp2387624_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 1.391e-2
Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 0
Query:  107 GGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGK-FESYKPGFDTYPEILVKSIRKVHC 196
            G VI G S     C+GS     L T S  V+ V    RS++ +VF+  V G  C++ +ER+ +RG+ + + + G        VKS+RK+ C
Sbjct:   69 GLVITGPSHP-PLCRGSIK---LLTQSGKVAVVREVDRSLNIAVFQAVVEGCGCYQLFERRNYRGRSYHARRTGEHQVGLRKVKSVRKIPC 329          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592852621|gb|GAXK01104923.1| (TSA: Calanus finmarchicus comp156713_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 7.445e-1
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 0
Query:  144 RSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKS 190
            +SIS  V  + V+ N    ++ R ++RG+ E   P +DTYP+   +S
Sbjct: 3616 KSISKPVSVIPVINNSGEPSFSRDQYRGEEEPSSP-YDTYPKTKPRS 3753          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953550|gb|GAXK01005003.1| (TSA: Calanus finmarchicus comp349723_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 7.570e-1
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0
Query:  150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196
            + RVE  GNCCW  + R++F+G F+++    G       L++SI    C
Sbjct:  289 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 426          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953549|gb|GAXK01005004.1| (TSA: Calanus finmarchicus comp349723_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.104e-1
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0
Query:  150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196
            + RVE  GNCCW  + R++F+G F+++    G       L++SI    C
Sbjct:  281 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 418          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592852620|gb|GAXK01104924.1| (TSA: Calanus finmarchicus comp156713_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 8.136e-1
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 0
Query:  144 RSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKS 190
            +SIS  V  + V+ N    ++ R ++RG+ E   P +DTYP+   +S
Sbjct: 3616 KSISKPVSVIPVINNSGEPSFSRDQYRGEEEPSSP-YDTYPKTKPRS 3753          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953543|gb|GAXK01005010.1| (TSA: Calanus finmarchicus comp349723_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.042e+0
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 0
Query:  150 VFRVEVVGNCCWEAYERKRFRGKFESY 176
            + RVE  GNCCW  + R++F+G F+++
Sbjct:  289 LMRVE--GNCCWTVHARRKFKG-FKTF 360          
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953546|gb|GAXK01005007.1| (TSA: Calanus finmarchicus comp349723_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.172e+0
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0
Query:  150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196
            + RVE  GNCCW  + R++F+G F+++    G       L++SI    C
Sbjct:  237 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTKC 374          
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000000487 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:34619:35273:-1 gene:EMLSAG00000000487 transcript:EMLSAT00000000487 description:"maker-LSalAtl2s1075-augustus-gene-0.29")

HSP 1 Score: 402.905 bits (1034), Expect = 3.034e-144
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
            MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC
Sbjct:    1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196          
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000002218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s141:411139:412003:1 gene:EMLSAG00000002218 transcript:EMLSAT00000002218 description:"maker-LSalAtl2s141-augustus-gene-4.25")

HSP 1 Score: 167.933 bits (424), Expect = 3.288e-52
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 0
Query:    7 SLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
            +L   S W+     T + C  ++DC  +DWL+KN+ +VP  V NI ++L +I CGYNE+ PK+ C+D+I   DDE                  + +S LR GVI G   +   C GS V + LK  ++ +SK+ RR+RSI G VF++EV+GNCCW+AY+RK FRG+FE Y+PGF+  PEI+VKSI+KV C
Sbjct:    9 TLFLTSEWTKILAVTYK-CKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDE------------------DETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179          
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000007690 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:466913:467611:-1 gene:EMLSAG00000007690 transcript:EMLSAT00000007690 description:"maker-LSalAtl2s447-augustus-gene-4.44")

HSP 1 Score: 70.8626 bits (172), Expect = 1.745e-15
Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 0
Query:    4 ISTSLSFLSLWSFSTEKT--SRNCTQLQDCGPVDWLLKNRQS-VPSSVGNISELLRNINCGYN--ENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAV-------CYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
            IS + S L L+     +     NC  L +C P+ + LK+R S +      I+ +L    CG++  +N PKV C D+             +Y    +      +S  + G +   + M       + V         +L    +Y    + + R     VFR+EV+GNCCW+  ER R RGK +    GFD  P+I  KS++   C
Sbjct:    7 ISVNFSLLVLFITLERRVEGGSNCIPLTECSPLKYFLKHRGSRIKYDRFRINNILWKKRCGFDPYQNTPKVNCPDK-------------EYPVRETNPVQAKSSGVINGKITRDVCMGSLRIHHNHVRDGSDIKINVLSGRKYYDLIKYLKYR----EVFRIEVIGNCCWKINERTRHRGKTQLLHGGFDDEPDIQPKSVQVFMC 194          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000487 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000487 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592857647|gb|GAXK01099915.1|5.261e-445.45TSA: Calanus finmarchicus comp253431_c0_seq1 trans... [more]
gi|592929950|gb|GAXK01028595.1|7.874e-344.74TSA: Calanus finmarchicus comp468108_c1_seq2 trans... [more]
gi|592929951|gb|GAXK01028594.1|1.330e-244.74TSA: Calanus finmarchicus comp468108_c1_seq1 trans... [more]
gi|592931040|gb|GAXK01027513.1|1.391e-234.07TSA: Calanus finmarchicus comp2387624_c0_seq1 tran... [more]
gi|592852621|gb|GAXK01104923.1|7.445e-134.04TSA: Calanus finmarchicus comp156713_c0_seq1 trans... [more]
gi|592953550|gb|GAXK01005003.1|7.570e-134.69TSA: Calanus finmarchicus comp349723_c0_seq5 trans... [more]
gi|592953549|gb|GAXK01005004.1|8.104e-134.69TSA: Calanus finmarchicus comp349723_c0_seq6 trans... [more]
gi|592852620|gb|GAXK01104924.1|8.136e-134.04TSA: Calanus finmarchicus comp156713_c0_seq2 trans... [more]
gi|592953543|gb|GAXK01005010.1|1.042e+044.44TSA: Calanus finmarchicus comp349723_c0_seq12 tran... [more]
gi|592953546|gb|GAXK01005007.1|1.172e+034.69TSA: Calanus finmarchicus comp349723_c0_seq9 trans... [more]

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BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000004873.034e-144100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:3461... [more]
EMLSAP000000022183.288e-5244.74pep:novel supercontig:LSalAtl2s:LSalAtl2s141:41113... [more]
EMLSAP000000076901.745e-1527.32pep:novel supercontig:LSalAtl2s:LSalAtl2s447:46691... [more]
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BLAST of EMLSAG00000000487 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000487 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000487 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000487 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1075supercontigLSalAtl2s1075:34619..35273 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1075-augustus-gene-0.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000487 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000487EMLSAT00000000487-696334Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1075:34619..35273-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000487-683253 ID=EMLSAG00000000487-683253|Name=EMLSAG00000000487|organism=Lepeophtheirus salmonis|type=gene|length=655bp|location=Sequence derived from alignment at LSalAtl2s1075:34619..35273- (Lepeophtheirus salmonis)
ATGGATTTTATTTCAACATCTCTTTCTTTCCTCTCATTATGGAGCTTTTC AACAGAGAAAACATCTCGAAATTGCACTCAACTACAGGATTGTGGGCCAG TTGATTGGCTTCTAAAAAACAGGCAAAGTGTGCCCTCATCCGTGGGCAAT ATATCTGAACTCCTCAGGTATGTAAGTGTTACAGGATTAGTCGAGGAATG TTGAAACAATACAAACAAAACTTATTTTTAGAAATATCAACTGTGGATAC AACGAAAATGGACCTAAAGTATACTGCTCTGATGAAATTAGTGAATTCGA TGATGAATTTGATGAAATTTATGATGATTATGATGAAGAAGCATCAGGAG ACTATGACTACAATAATTCTTCTCAGCTGAGAGGTGGTGTCATTGATGGT CTCTCAATGGATGGCTCTACTTGTCAAGGATCAGCAGTATGCTATATCCT TAAAACAGACAGTTTCTATGTTTCAAAGGTACATAGAAGAAGAAGAAGCA TTTCTGGGAGTGTTTTTCGAGTCGAAGTTGTCGGAAACTGCTGTTGGGAA GCATATGAGCGAAAAAGGTTTCGTGGTAAATTTGAGTCATATAAGCCTGG CTTCGACACTTACCCAGAAATACTCGTGAAATCTATTAGAAAAGTGCATT GTTAA
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