EMLSAG00000000487, EMLSAG00000000487-683253 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592857647|gb|GAXK01099915.1| (TSA: Calanus finmarchicus comp253431_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 5.261e-4 Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 0 Query: 152 RVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVH 195 RV V GNCCW Y + FRG+ S PG +VKSI+K+ Sbjct: 288 RVVVTGNCCWRLYSSRLFRGRPLSLGPGATQVGVGMVKSIKKLE 419
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592929950|gb|GAXK01028595.1| (TSA: Calanus finmarchicus comp468108_c1_seq2 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 7.874e-3 Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0 Query: 157 GNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKV 194 GNCCW + KRFRG+ + +PG VKSI+K+ Sbjct: 54 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKL 167
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592929951|gb|GAXK01028594.1| (TSA: Calanus finmarchicus comp468108_c1_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 1.330e-2 Identity = 17/38 (44.74%), Postives = 23/38 (60.53%), Query Frame = 0 Query: 157 GNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKV 194 GNCCW + KRFRG+ + +PG VKSI+K+ Sbjct: 54 GNCCWRLHRNKRFRGRSLTVRPGATHTGIGNVKSIKKL 167
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592931040|gb|GAXK01027513.1| (TSA: Calanus finmarchicus comp2387624_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 1.391e-2 Identity = 31/91 (34.07%), Postives = 48/91 (52.75%), Query Frame = 0 Query: 107 GGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGK-FESYKPGFDTYPEILVKSIRKVHC 196 G VI G S C+GS L T S V+ V RS++ +VF+ V G C++ +ER+ +RG+ + + + G VKS+RK+ C Sbjct: 69 GLVITGPSHP-PLCRGSIK---LLTQSGKVAVVREVDRSLNIAVFQAVVEGCGCYQLFERRNYRGRSYHARRTGEHQVGLRKVKSVRKIPC 329
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592852621|gb|GAXK01104923.1| (TSA: Calanus finmarchicus comp156713_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 7.445e-1 Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 0 Query: 144 RSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKS 190 +SIS V + V+ N ++ R ++RG+ E P +DTYP+ +S Sbjct: 3616 KSISKPVSVIPVINNSGEPSFSRDQYRGEEEPSSP-YDTYPKTKPRS 3753
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953550|gb|GAXK01005003.1| (TSA: Calanus finmarchicus comp349723_c0_seq5 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 7.570e-1 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 289 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 426
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953549|gb|GAXK01005004.1| (TSA: Calanus finmarchicus comp349723_c0_seq6 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 8.104e-1 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 281 LMRVE--GNCCWTVHARRKFKG-FKTFVRSQGELNLSSRLIRSIASTEC 418
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592852620|gb|GAXK01104924.1| (TSA: Calanus finmarchicus comp156713_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 8.136e-1 Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 0 Query: 144 RSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKS 190 +SIS V + V+ N ++ R ++RG+ E P +DTYP+ +S Sbjct: 3616 KSISKPVSVIPVINNSGEPSFSRDQYRGEEEPSSP-YDTYPKTKPRS 3753
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953543|gb|GAXK01005010.1| (TSA: Calanus finmarchicus comp349723_c0_seq12 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.042e+0 Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY 176 + RVE GNCCW + R++F+G F+++ Sbjct: 289 LMRVE--GNCCWTVHARRKFKG-FKTF 360
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Match: gi|592953546|gb|GAXK01005007.1| (TSA: Calanus finmarchicus comp349723_c0_seq9 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.172e+0 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 150 VFRVEVVGNCCWEAYERKRFRGKFESY--KPGFDTYPEILVKSIRKVHC 196 + RVE GNCCW + R++F+G F+++ G L++SI C Sbjct: 237 LMRVE--GNCCWTIHARRKFKG-FKTFVQSQGELNLSSKLIRSIANTKC 374
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000000487 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1075:34619:35273:-1 gene:EMLSAG00000000487 transcript:EMLSAT00000000487 description:"maker-LSalAtl2s1075-augustus-gene-0.29") HSP 1 Score: 402.905 bits (1034), Expect = 3.034e-144 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 Query: 1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC Sbjct: 1 MDFISTSLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000002218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s141:411139:412003:1 gene:EMLSAG00000002218 transcript:EMLSAT00000002218 description:"maker-LSalAtl2s141-augustus-gene-4.25") HSP 1 Score: 167.933 bits (424), Expect = 3.288e-52 Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 0 Query: 7 SLSFLSLWSFSTEKTSRNCTQLQDCGPVDWLLKNRQSVPSSVGNISELLRNINCGYNENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAVCYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 +L S W+ T + C ++DC +DWL+KN+ +VP V NI ++L +I CGYNE+ PK+ C+D+I DDE + +S LR GVI G + C GS V + LK ++ +SK+ RR+RSI G VF++EV+GNCCW+AY+RK FRG+FE Y+PGF+ PEI+VKSI+KV C Sbjct: 9 TLFLTSEWTKILAVTYK-CKSIKDCSSLDWLMKNKGNVPFKVSNIFKVLGHIGCGYNESEPKILCTDDIVNADDE------------------DETSALRNGVITGYLENEVGCTGSIVYHELKEKTYSISKILRRKRSIGGDVFQIEVIGNCCWKAYDRKSFRGEFELYEPGFNICPEIIVKSIKKVDC 179
BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Match: EMLSAP00000007690 (pep:novel supercontig:LSalAtl2s:LSalAtl2s447:466913:467611:-1 gene:EMLSAG00000007690 transcript:EMLSAT00000007690 description:"maker-LSalAtl2s447-augustus-gene-4.44") HSP 1 Score: 70.8626 bits (172), Expect = 1.745e-15 Identity = 56/205 (27.32%), Postives = 88/205 (42.93%), Query Frame = 0 Query: 4 ISTSLSFLSLWSFSTEKT--SRNCTQLQDCGPVDWLLKNRQS-VPSSVGNISELLRNINCGYN--ENGPKVYCSDEISEFDDEFDEIYDDYDEEASGDYDYNNSSQLRGGVIDGLSMDGSTCQGSAV-------CYILKTDSFYVSKVHRRRRSISGSVFRVEVVGNCCWEAYERKRFRGKFESYKPGFDTYPEILVKSIRKVHC 196 IS + S L L+ + NC L +C P+ + LK+R S + I+ +L CG++ +N PKV C D+ +Y + +S + G + + M + V +L +Y + + R VFR+EV+GNCCW+ ER R RGK + GFD P+I KS++ C Sbjct: 7 ISVNFSLLVLFITLERRVEGGSNCIPLTECSPLKYFLKHRGSRIKYDRFRINNILWKKRCGFDPYQNTPKVNCPDK-------------EYPVRETNPVQAKSSGVINGKITRDVCMGSLRIHHNHVRDGSDIKINVLSGRKYYDLIKYLKYR----EVFRIEVIGNCCWKINERTRHRGKTQLLHGGFDDEPDIQPKSVQVFMC 194 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000487 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000487 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 21
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BLAST of EMLSAG00000000487 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000487 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000487 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000487 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000487 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1075:34619..35273- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000487-683253 ID=EMLSAG00000000487-683253|Name=EMLSAG00000000487|organism=Lepeophtheirus salmonis|type=gene|length=655bp|location=Sequence derived from alignment at LSalAtl2s1075:34619..35273- (Lepeophtheirus salmonis)back to top Add to Basket
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