EMLSAG00000000494, EMLSAG00000000494-683260 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000000494
Unique Name	EMLSAG00000000494-683260
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592756275|gb|GAXK01198138.1| (TSA: Calanus finmarchicus comp1353286_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 3.122e-5
Identity = 28/79 (35.44%), Postives = 39/79 (49.37%), Query Frame = 0

Query:   23 YEDAKALLAPAPYFANVH--HINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99
            Y D + L A   Y  NV   + N   G D    E  D  D AGS+ VSL + R++ ++YTV+GD  +   V Y+   Q 
Sbjct:  125 YADERPLYA---YSYNVKDDYSNNNFGAD----ESRDGEDTAGSYYVSLPDGRLQKVSYTVNGDGGYVVQVSYQGEAQF 340

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592785349|gb|GAXK01169219.1| (TSA: Calanus finmarchicus comp991_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 7.649e-5
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0

Query:   30 LAPAPYFANVHHINAESGVDISTVEQCDN-GDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQY 93
            LAP PY       +  S  +    E  D  G+VAGSF ++L + R++T TYT + ++ F  +V Y
Sbjct:   97 LAPQPYAYEYGVADDYSKANFKKAETQDAYGNVAGSFTIALPDGRLQTTTYTATHEAGFVAEVTY 291

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776562|gb|GAXK01178006.1| (TSA: Calanus finmarchicus comp14256_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 1.294e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776558|gb|GAXK01178010.1| (TSA: Calanus finmarchicus comp14256_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.002e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776559|gb|GAXK01178009.1| (TSA: Calanus finmarchicus comp14256_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.152e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776561|gb|GAXK01178007.1| (TSA: Calanus finmarchicus comp14256_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.338e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776557|gb|GAXK01178011.1| (TSA: Calanus finmarchicus comp14256_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.554e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776560|gb|GAXK01178008.1| (TSA: Calanus finmarchicus comp14256_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.771e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592776556|gb|GAXK01178012.1| (TSA: Calanus finmarchicus comp14256_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 4.117e-4
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + +  EQ D    +GS++V+L + R + + Y   GDS    DV Y+
Sbjct:   11 SGANFAQNEQRDGYSTSGSYRVALPDGRTQVVNYHTDGDSGNIQDVTYE 157

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BLAST of EMLSAG00000000494 vs. C. finmarchicus
Match: gi|592844004|gb|GAXK01113540.1| (TSA: Calanus finmarchicus comp94071_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 4.598e-4
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 0

Query:   55 QCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            Q  NG+V GSF ++L + RI+T TYT +    F  +V Y+
Sbjct:  185 QDQNGNVKGSFVIALPDGRIQTTTYTATEQGGFIAEVTYQ 304

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000494 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:68122:71019:1 gene:EMLSAG00000000494 transcript:EMLSAT00000000494 description:"snap_masked-LSalAtl2s1077-processed-gene-0.1")

HSP 1 Score: 206.068 bits (523), Expect = 1.021e-69
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query:    1 MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99
            MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL
Sbjct:    1 MCFGLVERLYSTLENILIFEVQYEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKMLLQL 99

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000007513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s431:235735:236412:-1 gene:EMLSAG00000007513 transcript:EMLSAT00000007513 description:"augustus_masked-LSalAtl2s431-processed-gene-2.0")

HSP 1 Score: 62.003 bits (149), Expect = 3.256e-13
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0

Query:   43 NAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKM 95
            +AESGVDIS  E   NGDV GS+KV+L + RI+T+TY V  +S F  DV+Y++
Sbjct:  155 DAESGVDISAXEXAINGDVEGSYKVALPDGRIQTVTYYVIENSGFVADVKYEV 207

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000002964 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1702:3331:3774:-1 gene:EMLSAG00000002964 transcript:EMLSAT00000002964 description:"augustus-LSalAtl2s1702-processed-gene-0.0")

HSP 1 Score: 59.6918 bits (143), Expect = 1.321e-12
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0

Query:   38 NVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            N   ++ ES VD S  E  +NG V+GS+KV L + RIKT+TYTV GDS F  DVQ++
Sbjct:   73 NYAVLDEESSVDFSADELAENGVVSGSYKVVLPDGRIKTVTYTVEGDSGFVADVQFE 129

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000002428 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1463:10232:41558:-1 gene:EMLSAG00000002428 transcript:EMLSAT00000002428 description:"augustus-LSalAtl2s1463-processed-gene-0.3")

HSP 1 Score: 58.5362 bits (140), Expect = 2.879e-12
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query:   35 YFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            Y  N   ++ ESGV++S  E  +NG V+GS+KV L + R+K +TYTV GDS F  DVQ++
Sbjct:   43 YGYNYGVVDDESGVNMSADELAENGVVSGSYKVVLPDGRMKIVTYTVEGDSGFVADVQFE 102

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000495 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:100747:101118:1 gene:EMLSAG00000000495 transcript:EMLSAT00000000495 description:"augustus-LSalAtl2s1077-processed-gene-0.10")

HSP 1 Score: 58.151 bits (139), Expect = 3.178e-12
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query:   35 YFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            Y  N   ++ ESGV++S  E  +NG V+GS+KV L + R+K +TYTV GDS F  DVQ++
Sbjct:   43 YGYNYGVVDDESGVNMSADELAENGVVSGSYKVVLPDGRMKIVTYTVEGDSGFVADVQFE 102

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000007669 (pep:novel supercontig:LSalAtl2s:LSalAtl2s446:41257:76039:1 gene:EMLSAG00000007669 transcript:EMLSAT00000007669 description:"augustus-LSalAtl2s446-processed-gene-2.13")

HSP 1 Score: 53.5286 bits (127), Expect = 9.258e-10
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 0

Query:   23 YEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            Y+ A    +P PY       +  SGV+ S  E  D   ++GS+ V+L + RI+T++YTV G S F  DVQY+
Sbjct:  124 YQPATYDESPKPYNYQYAVSDDYSGVNFSAEENSDAKVISGSYSVALPDGRIQTVSYTVDGYSGFVADVQYQ 195

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000005985 (pep:novel supercontig:LSalAtl2s:LSalAtl2s322:1028992:1029576:1 gene:EMLSAG00000005985 transcript:EMLSAT00000005985 description:"augustus-LSalAtl2s322-processed-gene-9.11")

HSP 1 Score: 48.1358 bits (113), Expect = 2.624e-8
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 0

Query:   23 YEDAKALLAPAPYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            Y+  K   AP PY       +  +G + S  E  D    +GS+KV+L + RI+T+TYTV   + F  DVQY+
Sbjct:   59 YKPTKYKEAPQPYAFQYGVADDYTGSNFSAEENADGKITSGSYKVALPDGRIQTVTYTVDAYNGFVADVQYE 130

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000000538 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1088:2159:2548:-1 gene:EMLSAG00000000538 transcript:EMLSAT00000000538 description:"snap_masked-LSalAtl2s1088-processed-gene-0.9")

HSP 1 Score: 46.9802 bits (110), Expect = 2.924e-8
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SGV +   E  D   V GS++V+L ++RI+ +TYTV GDS F  +V+Y+
Sbjct:   50 SGVKLRAEESSDAKVVKGSYEVALPDSRIQKVTYTVDGDSGFVANVKYE 98

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BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000005986 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3234:38195:38554:1 gene:EMLSAG00000005986 transcript:EMLSAT00000005986 description:"augustus_masked-LSalAtl2s3234-processed-gene-0.0")

HSP 1 Score: 46.2098 bits (108), Expect = 5.221e-8
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 0

Query:   34 PYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            PY       +  SG D S  E  D   V+GS++V L + R+K +TY V G S F  DV+Y+
Sbjct:   45 PYSYQYAVQDGPSGNDFSAQESSDGQVVSGSYRVLLPDGRVKVVTYEVEGGSGFVADVKYE 105

[Close]

BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Match: EMLSAP00000012059 (pep:novel supercontig:LSalAtl2s:LSalAtl2s85:1250196:1251194:1 gene:EMLSAG00000012059 transcript:EMLSAT00000012059 description:"snap-LSalAtl2s85-processed-gene-11.56")

HSP 1 Score: 45.8246 bits (107), Expect = 1.321e-7
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            SG + S  E  D     GS+KV+L + RI+T++YTV   + F  DVQY+
Sbjct:   66 SGSNFSAEENADGKITTGSYKVALPDGRIQTVSYTVDAYNGFVADVQYE 114

[Close]

BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966360|gb|ABU41132.1| (putative cuticle protein, partial [Lepeophtheirus salmonis])

HSP 1 Score: 75.485 bits (184), Expect = 1.270e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0

Query:   42 INAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            ++AESGVDIS  EQ DNG V+GS+KV+L + RIKT+TYTV GDS F  DVQY+
Sbjct:   35 LDAESGVDISADEQADNGAVSGSYKVALPDGRIKTVTYTVEGDSGFVADVQYE 87

[Close]

BLAST of EMLSAG00000000494 vs. nr
Match: gi|225714482|gb|ACO13087.1| (Repetitive proline-rich cell wall protein 2 precursor [Lepeophtheirus salmonis])

HSP 1 Score: 67.0106 bits (162), Expect = 1.826e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0

Query:   43 NAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYKM 95
            +AESGVDIS  EQ  NGDV GS+KV+L + RI+T+TY V G+S F  DV+Y++
Sbjct:  155 DAESGVDISADEQAINGDVEGSYKVALPDGRIQTVTYYVIGNSGFVADVKYEV 207

[Close]

BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966284|gb|ABU41095.1| (putative cuticle protein [Lepeophtheirus salmonis])

HSP 1 Score: 61.2326 bits (147), Expect = 8.745e-10
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0

Query:   33 APYFANVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQYK 94
            A Y  N   ++ ES VD S  E  +NG V+GS+KV L + RIKT+TYTV GDS F  DVQ++
Sbjct:   67 ASYAYNYAVLDEESSVDFSADELAENGVVSGSYKVVLPDGRIKTVTYTVEGDSGFVADVQFE 128

[Close]

BLAST of EMLSAG00000000494 vs. nr
Match: gi|155966124|gb|ABU41017.1| (BCS-1-like protein, partial [Lepeophtheirus salmonis])

HSP 1 Score: 55.0694 bits (131), Expect = 2.543e-7
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0

Query:   38 NVHHINAESGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDV 91
            N   ++AESG D S  EQ + G V+G +KV L++ +I T++YTV GDS F  D+
Sbjct:   64 NYAVLDAESGNDFSAEEQAEGGIVSGEYKVKLADGKIMTVSYTVEGDSGFVADI 117

[Close]

BLAST of EMLSAG00000000494 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1142_size59991-snap-gene-0.14 (protein:Tk01293 transcript:maker-scaffold1142_size59991-snap-gene-0.14-mRNA-1 annotation:"bcs-1 protein")

HSP 1 Score: 43.1282 bits (100), Expect = 7.199e-7
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 0

Query:   46 SGVDISTVEQCDNGDVAGSFKVSLSNARIKTITYTVSGDSVFFTDVQY 93
            S +D +  E+ +    +GS++V L + R +T+TY+V+GDS +  DVQY
Sbjct:   53 SQLDFNANEEREGYATSGSYQVLLPDGRTQTVTYSVNGDSGYVADVQY 100

The following BLAST results are available for this feature:

BLAST of EMLSAG00000000494 vs. GO
BLAST of EMLSAG00000000494 vs. C. finmarchicus
BLAST of EMLSAG00000000494 vs. L. salmonis peptides
BLAST of EMLSAG00000000494 vs. SwissProt
BLAST of EMLSAG00000000494 vs. Select Arthropod Genomes
BLAST of EMLSAG00000000494 vs. nr
BLAST of EMLSAG00000000494 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000000494 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000494 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|592756275\|gb\|GAXK01198138.1\|	3.122e-5	35.44	TSA: Calanus finmarchicus comp1353286_c0_seq1 tran...	[more]
gi\|592785349\|gb\|GAXK01169219.1\|	7.649e-5	35.38	TSA: Calanus finmarchicus comp991_c0_seq1 transcri...	[more]
gi\|592776562\|gb\|GAXK01178006.1\|	1.294e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq1 transc...	[more]
gi\|592776558\|gb\|GAXK01178010.1\|	2.002e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq5 transc...	[more]
gi\|592776559\|gb\|GAXK01178009.1\|	2.152e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq4 transc...	[more]
gi\|592776561\|gb\|GAXK01178007.1\|	2.338e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq2 transc...	[more]
gi\|592776557\|gb\|GAXK01178011.1\|	2.554e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq6 transc...	[more]
gi\|592776560\|gb\|GAXK01178008.1\|	2.771e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq3 transc...	[more]
gi\|592776556\|gb\|GAXK01178012.1\|	4.117e-4	34.69	TSA: Calanus finmarchicus comp14256_c0_seq7 transc...	[more]
gi\|592844004\|gb\|GAXK01113540.1\|	4.598e-4	42.50	TSA: Calanus finmarchicus comp94071_c0_seq1 transc...	[more]

Pages

BLAST of EMLSAG00000000494 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 12


Match Name	E-value	Identity	Description
EMLSAP00000000494	1.021e-69	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:6812...	[more]
EMLSAP00000007513	3.256e-13	54.72	pep:novel supercontig:LSalAtl2s:LSalAtl2s431:23573...	[more]
EMLSAP00000002964	1.321e-12	52.63	pep:novel supercontig:LSalAtl2s:LSalAtl2s1702:3331...	[more]
EMLSAP00000002428	2.879e-12	48.33	pep:novel supercontig:LSalAtl2s:LSalAtl2s1463:1023...	[more]
EMLSAP00000000495	3.178e-12	48.33	pep:novel supercontig:LSalAtl2s:LSalAtl2s1077:1007...	[more]
EMLSAP00000007669	9.258e-10	38.89	pep:novel supercontig:LSalAtl2s:LSalAtl2s446:41257...	[more]
EMLSAP00000005985	2.624e-8	37.50	pep:novel supercontig:LSalAtl2s:LSalAtl2s322:10289...	[more]
EMLSAP00000000538	2.924e-8	44.90	pep:novel supercontig:LSalAtl2s:LSalAtl2s1088:2159...	[more]
EMLSAP00000005986	5.221e-8	39.34	pep:novel supercontig:LSalAtl2s:LSalAtl2s3234:3819...	[more]
EMLSAP00000012059	1.321e-7	42.86	pep:novel supercontig:LSalAtl2s:LSalAtl2s85:125019...	[more]

Pages

BLAST of EMLSAG00000000494 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000494 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000494 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 4


Match Name	E-value	Identity	Description
gi\|155966360\|gb\|ABU41132.1\|	1.270e-15	66.04	putative cuticle protein, partial [Lepeophtheirus ...	[more]
gi\|225714482\|gb\|ACO13087.1\|	1.826e-11	58.49	Repetitive proline-rich cell wall protein 2 precur...	[more]
gi\|155966284\|gb\|ABU41095.1\|	8.745e-10	51.61	putative cuticle protein [Lepeophtheirus salmonis]	[more]
gi\|155966124\|gb\|ABU41017.1\|	2.543e-7	46.30	BCS-1-like protein, partial [Lepeophtheirus salmon...	[more]

BLAST of EMLSAG00000000494 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
maker-scaffold1142_size59991-snap-gene-0.14	7.199e-7	39.58	protein:Tk01293 transcript:maker-scaffold1142_size...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1077	supercontig	LSalAtl2s1077:68122..71019 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap_masked-LSalAtl2s1077-processed-gene-0.1
Biotype	protein_coding
Evidence	IEA
Note	putative cuticle protein, partial [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000000494 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000000494	EMLSAT00000000494-696341	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1077:68122..71019+

gene from alignment at LSalAtl2s1077:68122..71019+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000000494-683260 ID=EMLSAG00000000494-683260|Name=EMLSAG00000000494|organism=Lepeophtheirus salmonis|type=gene|length=2898bp|location=Sequence derived from alignment at LSalAtl2s1077:68122..71019+ (Lepeophtheirus salmonis)
ATGTGTTTTGGCTTAGTTGAGAGATTATATAGTACCTTGGAAAACATACT
CATTTTTGAAGTTCAATACGAAGATGCTAAGGCTCTTTTAGCTCCTGCAC
CATATTTTGCAAATGTACATCATATTAGTTTGCTATTCTTTAGTCTCTAT
TAGAAAATTAAAACTGTGTCATTTTCTAATTTTAATAGTTTGTAATTTTT
GTTGTTGTTGTTGAAGCGTATAAAAGCATTGCTAATCTTCGTTCTATTTT
TTTTTATTCCGTAGACTTTTATGTACATATAATCTTCAATTAATTTTTTG
AAATAAAATTAATTATCTGAGTATTTTTTAAATAAATTTTGATATTGTTT
AATAGAAATATTACATTTTTCTACAAAAGTTTTTGAAAGAGTGAGGATAA
AAAAAAATCATCCATTATAAGATTTTTTCGTTTGTTATTCAAAGGACATC
ATTAACAAAAGAATATGCGTGATCTTCTCATCATCATTTTAGAACTATAA
TTAAAGAACTATTAACAAATAAAATATGCTAATGGCAAATAATCATTTTA
AGCATAAATAAATTTGGCTATTGATATATACTTTACCAAAAACGAGAAAA
TACTAATTGAAGCAAATTAGACATTATTTCCTACTTGGTTTACAATCGAT
GTGTGTTTATTAACTCTAATATTGAGATTATATCTCTTTTAAGCTTATTT
TAAATTTTACTATAAAAAAGTACACAAAGTACTTCAGTATTAAATTATTA
TGTAAAAATATAATAATAAATTAGATTTAGAATAATTTCAAATATTTTCA
CAAAATCCATATTGGATTTTTTTTCCATTTAATCTTTCAACTCGGCTCST
ATCMCAATATACTCAATATACGGAATATATGTCCTGTATAGTTTCTCCAC
TTTCCTTGGGTAAAATAAAACCAAATTAAATAATTATACTAGTACAGATA
GTAATCCGCAGGAATTAAAATATATTAATTTTATCTCAAGCGTATAACCT
ATATCACTTTTTAGTTTAAAGACTTTAGGGAGGAATAATTTTGGTTCAGT
CTGAACCTGAAGTGACAAAAGATGAGCAAATTTGCCAAACTATATTTCCA
ATTATAAAATTGACTCAAATAATATCCAAACTACAAGAGGTAATTTATTT
ATCTATTGGGTGGCCCACAACTTAAGTCCTTTAAACTTTAATGTCTTTCA
AATTGGGATATTGGATTTAGAGATTCGTGTCTCAAGTCAGAAATATTGCA
ACAGCGATTTTCAAAAAAAAAATCTACCGAAAAATGCCATAGACAATTTT
GATGATTATCTGACCTTAATCACCTAAATTTTGCATTGTAGTGTATGGTC
GGGAGGCAGGAGACAATTAATGTAAGTCAAAATGTCGTATTTTCCTATAA
AAACCTTAATCGGTAAGTAATGAAAGAATTTATGATTGACTCTAACTCAG
GACCATACTGTAAACCCTAACTAGGACTTTTAATTCACTGTTGGCATATA
ATTTTATCTATTAATCATCTCATACTAACCTATTAGTTATTTGAAATTAT
ATCAATTTGTCATTTACTACAAAAAAGTGGTGTAACAAACTTATCCAATA
TTTTTTGAACAAGGAGCAAATATATCATAATAGACCCATATGATATATCA
AACACTTGTATTGAATCTAAAGATTGTAGAAATTAACAATCTTGTTTTTT
GTTATATATGCCTCTACTAGGAACGAGTTTACAAATATTATCAAATATCT
GATATGTAATTAAACTTGTAAATCAAGGAAGATTTTTGAAAAGTTCATTA
ACATTTAAAAAAAAACCTGAATGAGTGCAGGGAGATAAATTATTTGGGAT
TTTGTTATTTTCTTTAATAGGGGACACATTTTGTCTGTCGCTTGAGATCC
GGCTTAAATGGGTCTCCTGAATTTAAAAATATTGTTATTCTTTTAATTAT
TTTTAATTTGTATTATGATTTTTTTTTTAACAATTTATAGATAATTTAAG
GAAAAATGTGTAGTTTCATGAAACTATTGTGAATGTTTATAAAGGTTTAT
GTATGATATTCTAAATGCTAAAAAATTATAAAAAAATGATCGGAACTTTA
TTGATAAAAAAGCTAATCATATTACTCTTTTCTTTTTTTTTTTTTTGTAA
AGCACAACTATTAAATGGTTTTGTAAAAAAAAAAAGWATATCAAGATTTA
TTTTGAAGTTGATATTTTTTTAATTTTTAGTAAGTGGTCACTGTATTGGG
TTTGATTGTTTAAATAAGAAATTGTCTTTATTTTTTCTTGGATTTTAAAG
AACTCAAAGCATATTAAAGTGAAATATATTAAGAGCAATAACTCATCAGG
AAAAAAAAAACATCCTTAGTACTCTACATATATATATGTGAGTTCTAATC
CTATAATTTATGAAGTGGTAATCTGAAAATGAAGCCGTTGTACATTAAAA
GCCCTAAGCATGAGTAGAAAGTCATTATTGTCCTGCATTGTTCTTGGCTT
TGCTTTAGCTAATGCTGTACTACAATTATACTGGAAGCCTATTTCTGCTT
CGGTACCTACACACTACTCCAACCCCCCCCCCCTCTTCCACCAGCAAAAT
CACTATTCTATGAACCCTTAAATCCCCTCTACCACCACCTCCTCCTCCGC
CCCTACCAACACCTGCATATATCCCTTATTGACCACTTTCACCATAAAAC
TATGCCTATGCCAACTCTATATTAGACGCTGAATCCGGTGTAGATATATC
TACAGTTGAACAATGTGATAACGGAGATGTTGCTGGATCCTTCAAGGTTT
CTCTTTCCAATGCCCGCATCAAAACTATTACTTACACAGTTTCTGGTGAT
AGTGTATTCTTTACTGACGTTCAATACAAAATGCTCCTGCAACTTTAG

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