EMLSAG00000000511, EMLSAG00000000511-683277 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000511
Unique NameEMLSAG00000000511-683277
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000511 vs. GO
Match: - (symbol:TMPRSS15 "Enteropeptidase" species:9823 "Sus scrofa" [GO:0004252 "serine-type endopeptidase activity" evidence=IEA] [GO:0005044 "scavenger receptor activity" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] InterPro:IPR000998 InterPro:IPR001190 InterPro:IPR001254 InterPro:IPR001314 InterPro:IPR002172 InterPro:IPR009003 InterPro:IPR017448 InterPro:IPR018114 Pfam:PF00057 Pfam:PF00089 Pfam:PF00530 Pfam:PF00629 PRINTS:PR00020 PRINTS:PR00722 PROSITE:PS00134 PROSITE:PS00135 PROSITE:PS00420 PROSITE:PS00740 PROSITE:PS50060 PROSITE:PS50068 PROSITE:PS50240 PROSITE:PS50287 SMART:SM00020 SMART:SM00137 SMART:SM00192 SMART:SM00202 GO:GO:0016020 GO:GO:0006508 GO:GO:0004252 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0005044 GO:GO:0006898 SUPFAM:SSF50494 Gene3D:4.10.400.10 InterPro:IPR023415 SUPFAM:SSF57424 PROSITE:PS01209 Gene3D:2.60.120.290 InterPro:IPR000859 Pfam:PF00431 SMART:SM00042 SUPFAM:SSF49854 PROSITE:PS01180 OrthoDB:EOG7RNK07 SUPFAM:SSF56487 TreeFam:TF351678 GeneTree:ENSGT00730000110471 OMA:FEDGFCF EMBL:CU856297 EMBL:CU914795 Ensembl:ENSSSCT00000013150 Uniprot:F1SHP8)

HSP 1 Score: 47.3654 bits (111), Expect = 1.215e-4
Identity = 31/137 (22.63%), Postives = 62/137 (45.26%), Query Frame = 0
Query:  144 ACGRNTQNRPCDDGYVGTKIEDDIIIPWFAILVYSYTYKYSVKKPIYVRCGATILNQNWLISSVACFFQNGRKAVFGEMEAIMGTYVVDKIGIPTITTKIKDVVTI---------EESISLYKLEKPIQHYTSFMSP 271
            +CG+    +      VG     +   PW   L Y+            + CGA++++++WL+S+  C +  GR     + +AI+G ++   +  P I T++ D + I         +  I++  LE  + +YT ++ P
Sbjct:  623 SCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQ----------LLCGASLVSRDWLVSAAHCVY--GRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKV-NYTDYIQP 746          
BLAST of EMLSAG00000000511 vs. GO
Match: - (symbol:TMPRSS15 "Enteropeptidase" species:9823 "Sus scrofa" [GO:0004252 "serine-type endopeptidase activity" evidence=IEA] [GO:0005044 "scavenger receptor activity" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR000998 InterPro:IPR001190 InterPro:IPR001254 InterPro:IPR001314 InterPro:IPR002172 InterPro:IPR009003 InterPro:IPR011163 InterPro:IPR017448 InterPro:IPR018114 Pfam:PF00057 Pfam:PF00089 Pfam:PF00530 Pfam:PF00629 PIRSF:PIRSF001138 PRINTS:PR00722 PROSITE:PS00134 PROSITE:PS00135 PROSITE:PS00420 PROSITE:PS00740 PROSITE:PS50060 PROSITE:PS50068 PROSITE:PS50240 PROSITE:PS50287 SMART:SM00020 SMART:SM00137 SMART:SM00192 SMART:SM00202 GO:GO:0016021 GO:GO:0006508 GO:GO:0004252 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0005044 GO:GO:0006898 SUPFAM:SSF50494 eggNOG:COG5640 Gene3D:4.10.400.10 InterPro:IPR023415 SUPFAM:SSF57424 PROSITE:PS01209 Gene3D:3.30.70.960 InterPro:IPR000082 Pfam:PF01390 SMART:SM00200 SUPFAM:SSF82671 PROSITE:PS50024 Gene3D:2.60.120.290 InterPro:IPR000859 Pfam:PF00431 SMART:SM00042 SUPFAM:SSF49854 PROSITE:PS01180 SUPFAM:SSF56487 MEROPS:S01.156 CTD:5651 HOGENOM:HOG000112380 HOVERGEN:HBG005588 KO:K01316 EMBL:D30799 PIR:A53663 RefSeq:NP_001001259.1 UniGene:Ssc.298 ProteinModelPortal:P98074 SMR:P98074 STRING:9823.ENSSSCP00000012801 GeneID:397152 KEGG:ssc:397152 Uniprot:P98074)

HSP 1 Score: 46.9802 bits (110), Expect = 1.347e-4
Identity = 31/137 (22.63%), Postives = 62/137 (45.26%), Query Frame = 0
Query:  144 ACGRNTQNRPCDDGYVGTKIEDDIIIPWFAILVYSYTYKYSVKKPIYVRCGATILNQNWLISSVACFFQNGRKAVFGEMEAIMGTYVVDKIGIPTITTKIKDVVTI---------EESISLYKLEKPIQHYTSFMSP 271
            +CG+    +      VG     +   PW   L Y+            + CGA++++++WL+S+  C +  GR     + +AI+G ++   +  P I T++ D + I         +  I++  LE  + +YT ++ P
Sbjct:  786 SCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQ----------LLCGASLVSRDWLVSAAHCVY--GRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKV-NYTDYIQP 909          
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Match: gi|592862147|gb|GAXK01095415.1| (TSA: Calanus finmarchicus comp201347_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 6.672e-1
Identity = 20/71 (28.17%), Postives = 31/71 (43.66%), Query Frame = 0
Query:   83 SQEIQTTNEDPCKTIKGVKCRFPAIY-GKTYYSCISSIDESKTWCYTDIEE-------NWDFCDQTTCFAC 145
            S ++ T   + C T+ G +C FP  Y G  YY C  +   +  WC T ++         W  CD  +  +C
Sbjct:  418 SSQLHTRVPNTCSTLTGSECVFPFTYQGAEYYRCTYAASPTP-WCATQVDSAGVVVTNKWGDCDTNSLSSC 627          
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Match: gi|592873784|gb|GAXK01083778.1| (TSA: Calanus finmarchicus comp177123_c6_seq91 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 8.284e-1
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0
Query:   94 CKTIKGV----KCRFP-AIYGKTYYSCISSIDESKTWCYTD-------IEENWDFC 137
            C+T+ GV    +C+FP    GKTY  C  S    K WC T+       I   W +C
Sbjct:  409 CQTVSGVDPGKQCKFPFNFQGKTYSGCTYSFGVDKPWCSTETDGTGQYIPGKWGYC 576          
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Match: gi|592873847|gb|GAXK01083715.1| (TSA: Calanus finmarchicus comp177123_c6_seq28 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 8.384e-1
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0
Query:   94 CKTIKGV----KCRFP-AIYGKTYYSCISSIDESKTWCYTD-------IEENWDFC 137
            C+T+ GV    +C+FP    GKTY  C  S    K WC T+       I   W +C
Sbjct: 2652 CQTVSGVDPGKQCKFPFNFQGKTYSGCTYSFGVDKPWCSTETDGTGQYIPGKWGYC 2819          
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Match: gi|592873848|gb|GAXK01083714.1| (TSA: Calanus finmarchicus comp177123_c6_seq27 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 8.390e-1
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0
Query:   94 CKTIKGV----KCRFP-AIYGKTYYSCISSIDESKTWCYTD-------IEENWDFC 137
            C+T+ GV    +C+FP    GKTY  C  S    K WC T+       I   W +C
Sbjct: 2684 CQTVSGVDPGKQCKFPFNFQGKTYSGCTYSFGVDKPWCSTETDGTGQYIPGKWGYC 2851          
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Match: gi|592873850|gb|GAXK01083712.1| (TSA: Calanus finmarchicus comp177123_c6_seq25 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 8.414e-1
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0
Query:   94 CKTIKGV----KCRFP-AIYGKTYYSCISSIDESKTWCYTD-------IEENWDFC 137
            C+T+ GV    +C+FP    GKTY  C  S    K WC T+       I   W +C
Sbjct: 2652 CQTVSGVDPGKQCKFPFNFQGKTYSGCTYSFGVDKPWCSTETDGTGQYIPGKWGYC 2819          
BLAST of EMLSAG00000000511 vs. L. salmonis peptides
Match: EMLSAP00000000511 (pep:novel supercontig:LSalAtl2s:LSalAtl2s107:679593:681950:-1 gene:EMLSAG00000000511 transcript:EMLSAT00000000511 description:"maker-LSalAtl2s107-snap-gene-5.21")

HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MTYKTGTKVLQSQECDTSNSKYLCTNNTNNFPKNALIGGSLVMNINGHCTLVEMLFEQRPFLVFWTLINSIFFQVEVCYSENSQEIQTTNEDPCKTIKGVKCRFPAIYGKTYYSCISSIDESKTWCYTDIEENWDFCDQTTCFACGRNTQNRPCDDGYVGTKIEDDIIIPWFAILVYSYTYKYSVKKPIYVRCGATILNQNWLISSVACFFQNGRKAVFGEMEAIMGTYVVDKIGIPTITTKIKDVVTIEESISLYKLEKPIQHYTSFMSPSNSTSFDNFSSGFDEYN 288
            MTYKTGTKVLQSQECDTSNSKYLCTNNTNNFPKNALIGGSLVMNINGHCTLVEMLFEQRPFLVFWTLINSIFFQVEVCYSENSQEIQTTNEDPCKTIKGVKCRFPAIYGKTYYSCISSIDESKTWCYTDIEENWDFCDQTTCFACGRNTQNRPCDDGYVGTKIEDDIIIPWFAILVYSYTYKYSVKKPIYVRCGATILNQNWLISSVACFFQNGRKAVFGEMEAIMGTYVVDKIGIPTITTKIKDVVTIEESISLYKLEKPIQHYTSFMSPSNSTSFDNFSSGFDEYN
Sbjct:    1 MTYKTGTKVLQSQECDTSNSKYLCTNNTNNFPKNALIGGSLVMNINGHCTLVEMLFEQRPFLVFWTLINSIFFQVEVCYSENSQEIQTTNEDPCKTIKGVKCRFPAIYGKTYYSCISSIDESKTWCYTDIEENWDFCDQTTCFACGRNTQNRPCDDGYVGTKIEDDIIIPWFAILVYSYTYKYSVKKPIYVRCGATILNQNWLISSVACFFQNGRKAVFGEMEAIMGTYVVDKIGIPTITTKIKDVVTIEESISLYKLEKPIQHYTSFMSPSNSTSFDNFSSGFDEYN 288          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000511 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2
Match NameE-valueIdentityDescription
-1.215e-422.63symbol:TMPRSS15 "Enteropeptidase" species:9823 "Su... [more]
-1.347e-422.63symbol:TMPRSS15 "Enteropeptidase" species:9823 "Su... [more]
back to top
BLAST of EMLSAG00000000511 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592862147|gb|GAXK01095415.1|6.672e-128.17TSA: Calanus finmarchicus comp201347_c3_seq2 trans... [more]
gi|592873784|gb|GAXK01083778.1|8.284e-135.71TSA: Calanus finmarchicus comp177123_c6_seq91 tran... [more]
gi|592873847|gb|GAXK01083715.1|8.384e-135.71TSA: Calanus finmarchicus comp177123_c6_seq28 tran... [more]
gi|592873848|gb|GAXK01083714.1|8.390e-135.71TSA: Calanus finmarchicus comp177123_c6_seq27 tran... [more]
gi|592873850|gb|GAXK01083712.1|8.414e-135.71TSA: Calanus finmarchicus comp177123_c6_seq25 tran... [more]

Pages

back to top
BLAST of EMLSAG00000000511 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005110.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s107:67959... [more]
back to top
BLAST of EMLSAG00000000511 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000511 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000511 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000511 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s107supercontigLSalAtl2s107:679593..681950 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s107-snap-gene-5.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000511 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000511EMLSAT00000000511-696358Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s107:679593..681950-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000511-683277 ID=EMLSAG00000000511-683277|Name=EMLSAG00000000511|organism=Lepeophtheirus salmonis|type=gene|length=2358bp|location=Sequence derived from alignment at LSalAtl2s107:679593..681950- (Lepeophtheirus salmonis)
ATGACATATAAAACTGGAACCAAAGTTCTCCAAAGTCAAGAATGTGATAC TTCGAATTCGAAATATCTTTGTACCAATAACACAAACAATTTCCCCAAAA ATGCTCTCATCGGTGGATCACTCGTGATGAATATTAATGGTCATTGCACT CTTGTTGGTATATTGGCAAAAAATGATACGAGTTGTAAAATCAACAAAAC TTGTTTTTATGATATCCGATATTTTCTGGAATACGTAAAGGAGATCATAA ATAGATAGTAACTGCTTATTCAATTCAAATATAATAAATGTTCATTTTTG AACAAATGAAATATACATAAAAACTTTTTACTAGTGATGTCGATCTAAAT TAACCATAAATTATTTTTTGTGCTGATATTTTTATAACTGATTTGATTTA TTTAGGTAAAGCACAAAAGTTTTTCCATTTCTTCCATATTATAAAATAAA CACANTTGTATAAACCATAGAAGATAAATAAAGATTTGTATGAAATTAAA AGAATTTAAGTGTTTAAATCTGTGTAACTAGAGGACGAGCCCGAAAAATT TCACAAAAATGTATTTAAACGCTAAAGATTTATCCTACTAATATCAAACT TTGCTTTATTTATTATTTCCATTTTCACAACAAAATTTACTTAAACATAC GAGAGGCTAAAATATAATGACAAAATNCAAAATTTAAAATGGTCAGGTAC TTGATGCATAAATATTCCGCTCATATTTGTTATTTAGGAATAGAAAACTA AAATAATATCAAAAAATTAAAATTTTCCAGAGTCGAGTTTTTTTTTTTGA AATGCTTAAAAGTTAACATTTATAACATCAAATAAATAAGAAATTGACAC GTCACTCATTTGAAAATGACTAAATATTTGAGTTTCATGATTTCAAATGA TGTTGTAAAAAAATTCTAAGACCTGCCTCTAAGGATGATGTTGAACATAG AAAATTTTACCAAAATCAACAACACCAATTCAAAAATGTATTTCTAGAAG GTCTGATTACTTTGTCTGTACCCTAATAACTCATGAGTATAACAATATTC ATGTTAAAGTAAAAAAATTGTCATTCAATGTCAATCACTTTGTTTTCATA TCCCACTTACAATGGATTAATAAACATTTGACTCATTTCACGTTTTCTAA AAAAATTATTATGGATCAATGTATAAAAATACATTATTAACTTTTGATTT AGTGTAATAGAGATGTTATTCGAGCAAAGACCTTTTTTAGTCTTTTGGAC ATTAATAAATTCTATCTTTTTTCAAGTTGAAGTATGTTACTCAGAAAATT CTCAAGAAATCCAGACAACAAATGAAGGTAAATACATAATATTTTTTATT ATAACCTGTTGTAAAAGTCAGTATAAAATGGTATATTATGTTTCAGTTAT ATTATTTATATAATTTTTTTAGACCCATGTAAAACAATAAAAGGGGTAAA ATGCCGTTTTCCAGCCATTTATGGCAAAACTTACTACAGTTGTATCAGTT CAATAGACGAATCAAAAACTTGGTGCTACACAGATATAGAGGAGAATTGG GATTTTTGTGACCAAACAACTTGTTTTGGTATGTAAATTGTGTAATTACT TACAATAAATGAAGTCATCTAAACAAGCCAAATACATAAACATTTGTTGT GCAAACTTTTAGCTTGTGGACGAAATACACAAAATAGACCGTGTGATGAT GGATATGTAGGAACAAAAATAGAAGACGATATTATCATACCCTGGTTTGC AATATTAGTCTATAGTTATACATATAAATATAGCGTAAAAAAACCTATTT ATGTAAGATGTGGAGCTACTATTTTAAACCAAAACTGGCTAATTTCATCT GTAGCTTGTTTTTTTCAAAATGGAAGAAAAGCTGTCTTCGGGGAGATGGA GGTAAGYAACTAGAATAGGTASTTGTTATATTTAATTCTCTATTTTACGA AAGGCCATTATGGGAACTTATGTTGTCGACAAAATAGGAATTCCCACAAT AACAACTAAAATTAAGGATGTTGTGACCATAGAAGAAAGTATTTCCCTCT ATAAATTAGAGAAGCCTATTCAACACTACACAAGCTTCATGTCTCCAGTG TGTCTTCCGAGCTCCAATTTCTTTGAAAAAAAAATGGCAACTTGTAATAA TAATAAAAATTTAAACTCCTTGTTAGTGAACTGGGATTTTCTATACGCCA AATTATATATTTTAAAGTATTCTCCAAAAAAAATTAGTCAGAATAAATAC AATTTTTGTTATTGTTGTGATTCACAGCAACAAAAAAATATATTTTCTAG ATAGAGCAATAGCACAAGTTTTGACAATTTTTCATCCGGGTTTGATGAAT ATAATTAA
back to top
Add to Basket