EMLSAG00000000523, EMLSAG00000000523-683289 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000523
Unique NameEMLSAG00000000523-683289
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000523 vs. C. finmarchicus
Match: gi|592861922|gb|GAXK01095640.1| (TSA: Calanus finmarchicus comp201614_c2_seq9 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 3.759e-1
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:   84 YQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRL 130
            Y+RMR  NNEASK+CR  R+ K    E +       +K+LK+++ ++
Sbjct:  799 YRRMRDLNNEASKKCRRNRKQKLNAKEQECQEEEEKHKMLKEKLKQM 939
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BLAST of EMLSAG00000000523 vs. C. finmarchicus
Match: gi|592861923|gb|GAXK01095639.1| (TSA: Calanus finmarchicus comp201614_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 3.791e-1
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:   84 YQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRL 130
            Y+RMR  NNEASK+CR  R+ K    E +       +K+LK+++ ++
Sbjct:  799 YRRMRDLNNEASKKCRRNRKQKLNAKEQECQEEEEKHKMLKEKLKQM 939
[Close]
BLAST of EMLSAG00000000523 vs. C. finmarchicus
Match: gi|592861924|gb|GAXK01095638.1| (TSA: Calanus finmarchicus comp201614_c2_seq7 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 3.791e-1
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:   84 YQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRL 130
            Y+RMR  NNEASK+CR  R+ K    E +       +K+LK+++ ++
Sbjct:  799 YRRMRDLNNEASKKCRRNRKQKLNAKEQECQEEEEKHKMLKEKLKQM 939
[Close]
BLAST of EMLSAG00000000523 vs. C. finmarchicus
Match: gi|592846370|gb|GAXK01111174.1| (TSA: Calanus finmarchicus comp696829_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 4.944e-1
Identity = 17/47 (36.17%), Postives = 29/47 (61.70%), Query Frame = 0 
Query:   84 YQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRL 130
            ++RMR  NNEASKR R+ R+ K    E +   +   N +LK++++ +
Sbjct:  550 FRRMRNLNNEASKRFRMSRQKKQSMQEEECKEIEYKNLMLKEKLVAM 690
[Close]
BLAST of EMLSAG00000000523 vs. C. finmarchicus
Match: gi|592781603|gb|GAXK01172965.1| (TSA: Calanus finmarchicus comp132406_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 6.853e-1
Identity = 20/49 (40.82%), Postives = 25/49 (51.02%), Query Frame = 0 
Query:   84 YQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRLNK 132
            Y   R +NNEA+KR R  RRLK  Q+  +   L   N  LK  +  L K
Sbjct:  226 YWAKRCKNNEAAKRSREARRLKENQIAMRARFLEEENTALKGEVEHLKK 372
[Close]
BLAST of EMLSAG00000000523 vs. L. salmonis peptides
Match: EMLSAP00000000523 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1081:173370:176201:1 gene:EMLSAG00000000523 transcript:EMLSAT00000000523 description:"maker-LSalAtl2s1081-augustus-gene-0.34")

HSP 1 Score: 1302.35 bits (3369), Expect = 0.000e+0
Identity = 649/649 (100.00%), Postives = 649/649 (100.00%), Query Frame = 0 
Query:    1 MSKSSPMEIVNMMRASPSSVDNAYGRXXGASSSRSXDLSSQEAIESLLLLGQEPILAPKKLELDSLEFSPSSCSITGADGISYYQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRLNKICHLLKDCVNDFKEDEEGEEEEAEEANPSKCSCFETVXAIKKFNRDTPDSTSLSNEELLAKSKLDRELEDMSEFYLDLDGRPSSSSDDEKKPKLTRSLSCQPVLNRTSLDAINETIVKTLKTPLVTLALTSAATRIQNSKPLSTNPPPGLISVTSPTVQNPKPAMSVSVKSPPSVITNNLQVIPPQLVFVTTKSPPPKTKEILIKCEPDLRVVEEVVETTAVPPPPLLTPSNSCLVMTTSNDNPYKEKPCGNELHSINKLTGYLDLTMRTFSRDDGTSAAERVIIKSALGLPFWQADELPSFICDNHRQEISFQTEHLSCVICGKKKKKPFSTPMSIITYRMSLEHHMNTGKILAIGQLICSICKDRYLKMEATLLNYSTNNQLKISSNLADTVPQIMGLRQNNTVIINKQKDVKVIVQPVPRITNFNSSTANSQLVSICNSSNSANEIVSSPTTSLVPTSCSNDNIFHKISRLNDALQAVNPRYRPIGFSITSIESCXPSVLQDAVXATDTAISTL 649
            MSKSSPMEIVNMMRASPSSVDNAYGRXXGASSSRSXDLSSQEAIESLLLLGQEPILAPKKLELDSLEFSPSSCSITGADGISYYQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRLNKICHLLKDCVNDFKEDEEGEEEEAEEANPSKCSCFETVXAIKKFNRDTPDSTSLSNEELLAKSKLDRELEDMSEFYLDLDGRPSSSSDDEKKPKLTRSLSCQPVLNRTSLDAINETIVKTLKTPLVTLALTSAATRIQNSKPLSTNPPPGLISVTSPTVQNPKPAMSVSVKSPPSVITNNLQVIPPQLVFVTTKSPPPKTKEILIKCEPDLRVVEEVVETTAVPPPPLLTPSNSCLVMTTSNDNPYKEKPCGNELHSINKLTGYLDLTMRTFSRDDGTSAAERVIIKSALGLPFWQADELPSFICDNHRQEISFQTEHLSCVICGKKKKKPFSTPMSIITYRMSLEHHMNTGKILAIGQLICSICKDRYLKMEATLLNYSTNNQLKISSNLADTVPQIMGLRQNNTVIINKQKDVKVIVQPVPRITNFNSSTANSQLVSICNSSNSANEIVSSPTTSLVPTSCSNDNIFHKISRLNDALQAVNPRYRPIGFSITSIESCXPSVLQDAVXATDTAISTL
Sbjct:    1 MSKSSPMEIVNMMRASPSSVDNAYGRXXGASSSRSXDLSSQEAIESLLLLGQEPILAPKKLELDSLEFSPSSCSITGADGISYYQRMRIRNNEASKRCRLKRRLKAEQLESQNNLLTMSNKLLKQRILRLNKICHLLKDCVNDFKEDEEGEEEEAEEANPSKCSCFETVXAIKKFNRDTPDSTSLSNEELLAKSKLDRELEDMSEFYLDLDGRPSSSSDDEKKPKLTRSLSCQPVLNRTSLDAINETIVKTLKTPLVTLALTSAATRIQNSKPLSTNPPPGLISVTSPTVQNPKPAMSVSVKSPPSVITNNLQVIPPQLVFVTTKSPPPKTKEILIKCEPDLRVVEEVVETTAVPPPPLLTPSNSCLVMTTSNDNPYKEKPCGNELHSINKLTGYLDLTMRTFSRDDGTSAAERVIIKSALGLPFWQADELPSFICDNHRQEISFQTEHLSCVICGKKKKKPFSTPMSIITYRMSLEHHMNTGKILAIGQLICSICKDRYLKMEATLLNYSTNNQLKISSNLADTVPQIMGLRQNNTVIINKQKDVKVIVQPVPRITNFNSSTANSQLVSICNSSNSANEIVSSPTTSLVPTSCSNDNIFHKISRLNDALQAVNPRYRPIGFSITSIESCXPSVLQDAVXATDTAISTL 649
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000523 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000523 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592861922|gb|GAXK01095640.1|3.759e-138.30TSA: Calanus finmarchicus comp201614_c2_seq9 trans... [more]
gi|592861923|gb|GAXK01095639.1|3.791e-138.30TSA: Calanus finmarchicus comp201614_c2_seq8 trans... [more]
gi|592861924|gb|GAXK01095638.1|3.791e-138.30TSA: Calanus finmarchicus comp201614_c2_seq7 trans... [more]
gi|592846370|gb|GAXK01111174.1|4.944e-136.17TSA: Calanus finmarchicus comp696829_c1_seq2 trans... [more]
gi|592781603|gb|GAXK01172965.1|6.853e-140.82TSA: Calanus finmarchicus comp132406_c0_seq1 trans... [more]

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BLAST of EMLSAG00000000523 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005230.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1081:1733... [more]
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BLAST of EMLSAG00000000523 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000523 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000523 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000523 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1081supercontigLSalAtl2s1081:173370..176201 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1081-augustus-gene-0.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000523 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000523EMLSAT00000000523-696370Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1081:173370..176201+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000523-683289 ID=EMLSAG00000000523-683289|Name=EMLSAG00000000523|organism=Lepeophtheirus salmonis|type=gene|length=2832bp|location=Sequence derived from alignment at LSalAtl2s1081:173370..176201+ (Lepeophtheirus salmonis)
TCATATTACTCCCTACTACTGTAGTAATATAGTAATAATAATAATAAGCC
GGAAAAGTTTGGCCCATTTTTTCCCGCCCGGCTTCATTTCATCACTTTGC
GTGATATTGTGAAACAAAAAGAAGCAGAAAGACACAGACAAAAAAAGAGG
AAAAAGAGAACAAAAAAGGGAAAAAGAAGTCGGATGACGCATCCCCTTTT
TGAATTAATTCACTGTAGGAGCAAGGAGATATTTGGAGCCTCTTTCGAAC
AAGTGATTTTTTTTCTTGGTGTCGGAGCTTTGTATCTATCTGGATCCTTT
GAAGGATTGGTTGCCCATATAGGATTGAGGAGGAAATTGTGTGTCTAGGT
ACGTATGACTGAGTCGGGTCGCCATTTTGGATTATTGCGCGATAGTTAAA
AGGAGGGAGAGAGAAGAAGAAGAAGGGAGAAAGAGAGAATGGATGGAGGG
GAAGGAGAAAGAGGGAGTGAGAGTGAGTTGGAGAAGTCGTTTGAAGGGAA
TGGTTCAATGTCTGTGCAGTGTATATGTTACAACTTACATGTATTTTCTA
TTAACTCATATACACACGAAAAAGTGTGTTAGCTCTGATGTGTTGCATAA
TTATTTCATTTTCAGACTTTTTTCCTAATTTGAAAGGAGTGAGCTTGGAG
TAGGAAATGAGCAAGTCTTCTCCCATGGAAATAGTGAACATGATGAGGGC
GTCTCCTTCCTCAGTGGATAATGCTTATGGAAGGRGNGANGGAGCCTCCT
CTTCTCGCTCTCMAGACCTGTCCTCTCAAGAAGCCATCGAGAGTCTCCTT
CTCTTGGGACAAGAACCCATTCTTGCGCCGAAGAAGCTGGAGCTGGATTC
TTTGGAGTTTTCTCCTTCATCTTGCTCCATTACGGGAGCGGATGGGATTT
CCTATTATCAGAGAATGCGGATACGGAATAATGAAGCCTCCAAACGATGC
CGTCTAAAAAGAAGACTCAAAGCGGAGCAATTAGAGAGTCAAAACAATCT
CCTCACCATGTCCAACAAACTTCTCAAACAAAGAATCCTCCGACTTAACA
AAATATGTCATCTCCTCAAGGACTGTGTCAATGATTTCAAAGAAGACGAA
GAGGGTGAGGAGGAGGAGGCGGAGGAGGCCAACCCTAGCAAATGCTCCTG
CTTTGAAACCGTTSCAGCCATTAAGAAATTCAATCGAGACACGCCTGACT
CAACCTCTCTGAGTAATGAGGAACTACTAGCAAAATCCAAACTCGATAGA
GAATTGGAAGATATGTCTGAATTTTATTTGGATTTGGATGGACGTCCAAG
TAGCAGTTCGGATGATGAGAAGAAGCCTAAATTGACTCGCTCTCTCTCTT
GTCAGCCAGTCCTAAATCGTACCTCTCTTGATGCTATTAATGAAACCATT
GTTAAAACACTCAAAACTCCTCTTGTGACACTTGCATTAACCTCAGCAGC
AACCCGGATTCAGAATTCGAAGCCTTTGTCCACTAATCCGCCGCCTGGTC
TCATTTCTGTCACCAGTCCTACGGTTCAAAATCCAAAGCCGGCTATGAGT
GTGAGTGTTAAGAGTCCACCCAGCGTCATCACCAATAATTTACAGGTCAT
TCCACCCCAACTTGTTTTTGTCACGACGAAGTCTCCACCTCCTAAAACTA
AAGAAATACTAATTAAATGTGAGCCAGATCTGAGAGTCGTTGAAGAAGTT
GTTGAAACTACAGCTGTACCMCCGCCGCCACTGCTAACACCCTCTAATTC
ATGCCTTGTAATGACTACCTCCAATGATAATCCATATAAAGAAAAACCTT
GTGGTAATGAGCTACATAGTATCAATAAGTTAACTGGTTATTTAGATTTA
ACTATGCGAACTTTTTCTCGGGATGATGGAACGTCTGCTGCTGAAAGGGT
CATCATTAAAAGTGCATTAGGACTTCCCTTTTGGCAAGCTGATGAGGTAG
GATGATGCTTGATTTCAGTTGTAGCTCATATAGGTTTAATAATTCCCTCC
CATTTAATATAATTCTAATTCTTTTATTGATATATAGCTACCATCGTTCA
TTTGTGATAATCACCGTCAAGAAATCTCATTTCAAACCGAACATTTATCT
TGTGTCATTTGTGGAAAAAAGAAGAAAAAACCATTTTCAACTCCTATGTC
CATCATCACATACAGGTTGGTCTTGTTATTCCACTAAGTCATTTCTAAAG
AATATTAAAACAAATTTTTTTCTGTTACAGAATGTCTCTCGAGCATCATA
TGAATACTGGTAAAATATTAGCTATTGGACAGCTTATTTGTTCTATTTGT
AAGGATCGTTATTTAAAGATGGAGGCTACGTTGTTAAACTATTCTACAAA
TAATCAACTTAAAATTTCGTCCAATCTCGCCGATACTGTCCCTCAAATCA
TGGGGTTGCGACAAAATAACACAGTTATCATTAATAAGCAAAAAGACGTT
AAAGTAATTGTTCAACCTGTTCCGAGAATTACAAATTTTAATTCAAGTGA
GTGTACTTTTAACCCAATATGTGTATAATTAATTCATTAAATTTTTACCA
CATTTATGTACATATTTAGGTACAGCTAATAGTCAACTGGTATCTATATG
CAATTCAAGTAATTCAGCCAATGAAATAGTCTCCTCGCCAACCACATCTT
TAGTACCTACTTCTTGTAGCAATGATAATATCTTTCATAAAATAAGTAGA
CTGAATGATGCTCTGCAAGCTGTTAATCCTCGATATAGACCCATTGGTTT
CTCAATAACATCTATAGAGTCATGCYCCCCATCTGTGTTGCAGGATGCAG
TTSCAGCCACAGATACTGCCATATCGACTCTT
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