EMLSAG00000000546, EMLSAG00000000546-683312 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Gamma-aminobutyric acid receptor subunit pi" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 PRINTS:PR00252 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0007165 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 PROSITE:PS00236 HGNC:HGNC:4089 EMBL:AC008514 ProteinModelPortal:E5RGF7 SMR:E5RGF7 Ensembl:ENST00000522868 NextBio:35498045 ArrayExpress:E5RGF7 Bgee:E5RGF7 Uniprot:E5RGF7) HSP 1 Score: 44.2838 bits (103), Expect = 3.562e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Gamma-aminobutyric acid receptor subunit pi" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 CTD:2568 KO:K05189 UniGene:Hs.26225 GeneID:2568 KEGG:hsa:2568 HGNC:HGNC:4089 EMBL:AC008514 RefSeq:XP_005265930.1 ProteinModelPortal:E7EWG0 SMR:E7EWG0 Ensembl:ENST00000519385 UCSC:uc011dev.2 NextBio:35500797 ArrayExpress:E7EWG0 Bgee:E7EWG0 Uniprot:E7EWG0) HSP 1 Score: 43.8986 bits (102), Expect = 7.987e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 TreeFam:TF315453 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 CTD:2568 KO:K05189 OMA:NDVEFSW EMBL:AAEX03003017 RefSeq:XP_005619275.1 RefSeq:XP_546242.3 ProteinModelPortal:E2RS87 Ensembl:ENSCAFT00000026815 GeneID:489124 KEGG:cfa:489124 NextBio:20862340 Uniprot:E2RS87) HSP 1 Score: 44.2838 bits (103), Expect = 8.168e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 TreeFam:TF315453 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 CTD:2568 KO:K05189 OMA:NDVEFSW EMBL:CU856091 RefSeq:XP_003134108.1 Ensembl:ENSSSCT00000026800 GeneID:100525792 KEGG:ssc:100525792 Uniprot:F1RRX8) HSP 1 Score: 44.2838 bits (103), Expect = 8.469e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Gamma-aminobutyric acid receptor subunit pi" species:9913 "Bos taurus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0007165 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 TreeFam:TF315453 HOGENOM:HOG000231335 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 EMBL:BT020763 RefSeq:NP_001015618.1 RefSeq:XP_005221444.1 UniGene:Bt.25960 ProteinModelPortal:Q5EA06 STRING:9913.ENSBTAP00000003604 Ensembl:ENSBTAT00000003604 GeneID:517459 KEGG:bta:517459 CTD:2568 eggNOG:NOG255582 InParanoid:Q5EA06 KO:K05189 OMA:NDVEFSW NextBio:20872445 Uniprot:Q5EA06) HSP 1 Score: 44.2838 bits (103), Expect = 8.546e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Gamma-aminobutyric acid receptor subunit pi" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0007165 "signal transduction" evidence=TAS] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 EMBL:CH471062 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 TreeFam:TF315453 ChEMBL:CHEMBL2093872 HOGENOM:HOG000231335 CTD:2568 eggNOG:NOG255582 KO:K05189 OMA:NDVEFSW EMBL:U95367 EMBL:AF009702 EMBL:AF009694 EMBL:AF009695 EMBL:AF009696 EMBL:AF009697 EMBL:AF009698 EMBL:AF009699 EMBL:AF009700 EMBL:AF009701 EMBL:AK292901 EMBL:BC074810 EMBL:BC074865 EMBL:BC109105 EMBL:BC109106 RefSeq:NP_055026.1 UniGene:Hs.26225 ProteinModelPortal:O00591 SMR:O00591 STRING:9606.ENSP00000265294 BindingDB:O00591 GuidetoPHARMACOLOGY:419 PhosphoSite:O00591 PaxDb:O00591 PRIDE:O00591 Ensembl:ENST00000265294 Ensembl:ENST00000518525 GeneID:2568 KEGG:hsa:2568 UCSC:uc003mau.3 GeneCards:GC05P170143 HGNC:HGNC:4089 HPA:CAB014883 MIM:602729 neXtProt:NX_O00591 PharmGKB:PA28503 InParanoid:O00591 PhylomeDB:O00591 GeneWiki:GABRP GenomeRNAi:2568 NextBio:10157 PRO:PR:O00591 ArrayExpress:O00591 Bgee:O00591 CleanEx:HS_GABRP Genevestigator:O00591 Uniprot:O00591) HSP 1 Score: 43.8986 bits (102), Expect = 9.105e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:Gabrp "Gamma-aminobutyric acid receptor subunit pi" species:10116 "Rattus norvegicus" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 RGD:620532 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 TreeFam:TF315453 OrthoDB:EOG712TVZ GeneTree:ENSGT00630000089571 OMA:NDVEFSW EMBL:AABR06063131 EMBL:AABR06063132 EMBL:AABR06063133 ProteinModelPortal:F1LM27 Ensembl:ENSRNOT00000043036 NextBio:35575378 PRO:PR:F1LM27 Uniprot:F1LM27) HSP 1 Score: 43.8986 bits (102), Expect = 9.968e-5 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVTCNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:GABRP "Gamma-aminobutyric acid receptor subunit pi" species:9606 "Homo sapiens" [GO:0004890 "GABA-A receptor activity" evidence=IEA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 GO:GO:0016021 GO:GO:0005886 GO:GO:0007165 GO:GO:0030054 GO:GO:0045202 GO:GO:0005230 GO:GO:0004890 GO:GO:0034220 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 HGNC:HGNC:4089 EMBL:AC008514 ProteinModelPortal:E5RI57 SMR:E5RI57 Ensembl:ENST00000519598 NextBio:35498567 ArrayExpress:E5RI57 Bgee:E5RI57 Uniprot:E5RI57) HSP 1 Score: 43.8986 bits (102), Expect = 1.039e-4 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVACNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:Gabrp "Gamma-aminobutyric acid receptor subunit pi" species:10116 "Rattus norvegicus" [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0007165 "signal transduction" evidence=IDA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 RGD:620532 GO:GO:0007165 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 ChEMBL:CHEMBL1907607 HOGENOM:HOG000231335 CTD:2568 eggNOG:NOG255582 KO:K05189 EMBL:U95368 RefSeq:NP_112291.1 UniGene:Rn.21401 ProteinModelPortal:O09028 STRING:10116.ENSRNOP00000048081 BindingDB:O09028 PaxDb:O09028 PRIDE:O09028 GeneID:81658 KEGG:rno:81658 UCSC:RGD:620532 InParanoid:O09028 NextBio:615218 PRO:PR:O09028 Genevestigator:O09028 Uniprot:O09028) HSP 1 Score: 43.8986 bits (102), Expect = 1.052e-4 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVTCNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. GO
Match: - (symbol:Gabrp "gamma-aminobutyric acid (GABA-A) receptor, pi" species:10116 "Rattus norvegicus" [GO:0004890 "GABA-A receptor activity" evidence=IEA;IDA] [GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA] [GO:0005254 "chloride channel activity" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0007165 "signal transduction" evidence=IDA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0034707 "chloride channel complex" evidence=IEA] [GO:0045202 "synapse" evidence=IEA] [GO:0045211 "postsynaptic membrane" evidence=IEA] InterPro:IPR006028 InterPro:IPR006029 InterPro:IPR006201 InterPro:IPR006202 InterPro:IPR008100 Pfam:PF02931 Pfam:PF02932 PRINTS:PR00252 PRINTS:PR00253 PRINTS:PR01724 InterPro:IPR018000 RGD:620532 GO:GO:0007165 GO:GO:0030054 GO:GO:0045211 GO:GO:0005230 GO:GO:0004890 Gene3D:2.70.170.10 PANTHER:PTHR18945 SUPFAM:SSF63712 SUPFAM:SSF90112 TIGRFAMs:TIGR00860 PROSITE:PS00236 GO:GO:0034707 GO:GO:0005254 GO:GO:1902476 HOVERGEN:HBG051707 ChEMBL:CHEMBL1907607 HOGENOM:HOG000231335 CTD:2568 eggNOG:NOG255582 KO:K05189 EMBL:U95368 RefSeq:NP_112291.1 UniGene:Rn.21401 ProteinModelPortal:O09028 STRING:10116.ENSRNOP00000048081 BindingDB:O09028 PaxDb:O09028 PRIDE:O09028 GeneID:81658 KEGG:rno:81658 UCSC:RGD:620532 InParanoid:O09028 NextBio:615218 PRO:PR:O09028 Genevestigator:O09028 Uniprot:O09028) HSP 1 Score: 43.8986 bits (102), Expect = 1.052e-4 Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKS--FHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ LV LW+ D+ I+ K H ++V +RL L+ +L+ L C M+ +K+PMDTQTCK Q Sbjct: 107 LDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSN--GTVLYALRITTTVTCNMDLSKYPMDTQTCKLQ 177
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592942970|gb|GAXK01015583.1| (TSA: Calanus finmarchicus comp1033358_c0_seq1 transcribed RNA sequence) HSP 1 Score: 120.553 bits (301), Expect = 5.472e-32 Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0 Query: 35 WQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 W PVELELV +LW+ D+EILRLK F LSVL++LQGLWM+ +L+V+ATRIRFMCPMN+ KFPMDTQTCKFQ Sbjct: 624 WVPVELELVERLWIPDAEILRLKGFSGLSVLNKLQGLWMSKEREVLYVIATRIRFMCPMNFNKFPMDTQTCKFQ 845
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592927380|gb|GAXK01031086.1| (TSA: Calanus finmarchicus comp559604_c0_seq1 transcribed RNA sequence) HSP 1 Score: 88.9669 bits (219), Expect = 1.680e-20 Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 0 Query: 33 DLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 D W PV++ + + WL D+EIL LK F +L+VL +L+GLW+ I++ +ATRI F+CPM + FP+D Q C FQ Sbjct: 576 DAWIPVDVSFIKEFWLPDAEILNLKEFETLNVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCLFQ 803
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592849637|gb|GAXK01107907.1| (TSA: Calanus finmarchicus comp2236046_c0_seq1 transcribed RNA sequence) HSP 1 Score: 87.0409 bits (214), Expect = 1.766e-20 Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0 Query: 33 DLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 + W PV++ + + WL D+EIL LK F +L VL +L+GLW+ I++ +ATRI F+CPM + FP+D Q C FQ Sbjct: 343 NAWIPVDVSFIKEFWLPDTEILNLKEFKTLHVLSKLEGLWLNKNKEIMYAVATRITFICPMTFNSFPLDVQVCLFQ 570
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592781436|gb|GAXK01173132.1| (TSA: Calanus finmarchicus comp132443_c0_seq1 transcribed RNA sequence) HSP 1 Score: 83.9593 bits (206), Expect = 1.740e-18 Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 P+ L ++ LWL D EIL LK+F + SVL +L+G+W+ +++ LATRI F+CPM + FPMD Q CKF+ Sbjct: 760 PINLHILHNLWLPDVEILDLKAFETHSVLSKLEGIWIDSNLEVMYALATRITFICPMRFNAFPMDIQICKFK 975
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592922812|gb|GAXK01035577.1| (TSA: Calanus finmarchicus comp617391_c0_seq3 transcribed RNA sequence) HSP 1 Score: 82.0333 bits (201), Expect = 7.029e-18 Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 15 PDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PD+++ + E N PV LELV LWL + I L++F + VL + GLW+T H I++ AT I F+CPM + FP+DTQ+CKFQ Sbjct: 1278 PDSFLQEMDMTESNAMF-----PVNLELVNHLWLPNVFIYNLRTFKVVQVLSKHAGLWITRNHEIMYSQATHINFICPMRFDAFPLDTQSCKFQ 1544
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592922813|gb|GAXK01035576.1| (TSA: Calanus finmarchicus comp617391_c0_seq2 transcribed RNA sequence) HSP 1 Score: 82.0333 bits (201), Expect = 8.129e-18 Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 15 PDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PD+++ + E N PV LELV LWL + I L++F + VL + GLW+T H I++ AT I F+CPM + FP+DTQ+CKFQ Sbjct: 1639 PDSFLQEMDMTESNAMF-----PVNLELVNHLWLPNVFIYNLRTFKVVQVLSKHAGLWITRNHEIMYSQATHINFICPMRFDAFPLDTQSCKFQ 1905
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592922814|gb|GAXK01035575.1| (TSA: Calanus finmarchicus comp617391_c0_seq1 transcribed RNA sequence) HSP 1 Score: 82.0333 bits (201), Expect = 8.160e-18 Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0 Query: 15 PDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PD+++ + E N PV LELV LWL + I L++F + VL + GLW+T H I++ AT I F+CPM + FP+DTQ+CKFQ Sbjct: 1653 PDSFLQEMDMTESNAMF-----PVNLELVNHLWLPNVFIYNLRTFKVVQVLSKHAGLWITRNHEIMYSQATHINFICPMRFDAFPLDTQSCKFQ 1919
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592919405|gb|GAXK01038970.1| (TSA: Calanus finmarchicus comp1179120_c0_seq2 transcribed RNA sequence) HSP 1 Score: 78.1814 bits (191), Expect = 1.541e-17 Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV LEL+ LW+ + I LK+F ++ VL +L GLW+ R I + AT I F+CPM + FP+DTQ CKFQ Sbjct: 360 PVNLELIKSLWIPNIFIYNLKTFQTIDVLSKLAGLWIDARKRIYYSQATHITFICPMLFDAFPLDTQICKFQ 575
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592750768|gb|GAXK01203645.1| (TSA: Calanus finmarchicus comp1398413_c1_seq2 transcribed RNA sequence) HSP 1 Score: 77.7962 bits (190), Expect = 9.262e-17 Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV LELV +LWL + I LK+F + VL + GLW+T I++ AT I F+CPM + FP+DTQ CKFQ Sbjct: 1044 PVNLELVRELWLPNIFIYNLKTFKVVEVLSKHAGLWITRNKEIMYSQATHINFICPMRFDAFPLDTQICKFQ 1259
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Match: gi|592853633|gb|GAXK01103911.1| (TSA: Calanus finmarchicus comp1170948_c0_seq1 transcribed RNA sequence) HSP 1 Score: 78.5666 bits (192), Expect = 9.390e-17 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV++ LV +W+ D EIL LK F +L VL +L+GLW+ +++ +A RI ++CPM + FP+D Q C+FQ Sbjct: 369 PVDVSLVEMIWMPDIEILNLKQFSTLDVLSKLEGLWLNRELELIYAVACRITWICPMTFDSFPLDVQVCRFQ 584
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000000546 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:207826:219456:1 gene:EMLSAG00000000546 transcript:EMLSAT00000000546 description:"snap_masked-LSalAtl2s108-processed-gene-3.2") HSP 1 Score: 239.195 bits (609), Expect = 2.772e-82 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 1 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT 117 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT Sbjct: 1 MILQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQDILKIDLLT 117
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003314 (pep:novel supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-1 gene:EMLSAG00000003314 transcript:EMLSAT00000003314 description:"augustus_masked-LSalAtl2s181-processed-gene-4.3") HSP 1 Score: 89.3521 bits (220), Expect = 5.463e-22 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0 Query: 30 ELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 E D W PV++ + + WL D+EIL LK F +L VL +L+GLW+ I++ +ATRI F+CPM + FP+D Q C+FQ Sbjct: 136 EDADSWIPVDVSFIKEFWLPDAEILNLKEFKTLDVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCRFQ 214
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003185 (pep:novel supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7") HSP 1 Score: 78.9518 bits (193), Expect = 3.785e-18 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0 Query: 37 PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 PV LELV +LWL + I LK+F + VL + GLW+T IL+ AT I F+CPM + FP+DTQ CKFQ Sbjct: 112 PVNLELVNELWLPNIFIYNLKTFKVVEVLSKHAGLWITSEKDILYSQATHITFICPMRFDAFPLDTQRCKFQ 183
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000003313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 78.1814 bits (191), Expect = 5.536e-18 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0 Query: 38 VELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 + +++ KLWLXD EIL L SF +LSVL +L+G+W+ +++ LATRI +C M + FPMD Q CKFQ Sbjct: 112 INSKIIEKLWLXDVEILNLSSFETLSVLSKLEGVWIGENSELMYSLATRITIICRMKFNAFPMDIQVCKFQ 182
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000001113 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:1 gene:EMLSAG00000001113 transcript:EMLSAT00000001113 description:"maker-LSalAtl2s1186-snap-gene-1.38") HSP 1 Score: 75.485 bits (184), Expect = 7.771e-17 Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 0 Query: 3 LQFNADPEEEGAPDTYIFTNNSIEFNEELLDLWQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 ++ + D EE A TNN ++ P+ E V +W+ D I LK++ + VL++L GLW+ IL+ AT I F+CPM + KFP+DTQ CKFQ Sbjct: 119 IELSPDFGEEVAGPGVNTTNNP--------NIVVPMSTEFVKDVWMPDIFIYSLKTYKVMDVLNKLAGLWIGADKTILYSQATHITFICPMRFDKFPLDTQVCKFQ 216
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Match: EMLSAP00000008455 (pep:novel supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11") HSP 1 Score: 71.2478 bits (173), Expect = 7.094e-16 Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0 Query: 35 WQPVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKF 107 W P++++ + LW+ + + L SFH+L L +L GLW+ + + AT + FMCPM + KFP+D +CKF Sbjct: 43 WIPIDMDFMNYLWVPNVFVYNLVSFHALDCLKKLAGLWVAEGKDLFYNQATHVTFMCPMRFNKFPLDQHSCKF 115
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold137_size321222-snap-gene-2.20 (protein:Tk01559 transcript:maker-scaffold137_size321222-snap-gene-2.20-mRNA-1 annotation:"sodium channel protein nach") HSP 1 Score: 73.559 bits (179), Expect = 1.096e-16 Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 27 FNEELLDLWQ--PVELELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 F +D Q PV+L LV LWL + I LK+F + VL +L GLW+ + I++ A++I +CPM + FP+DTQ CKFQ Sbjct: 41 FQNSSMDSAQLNPVDLNLVHDLWLPNVFIYNLKTFKVIDVLSKLAGLWVNAKKEIMYSQASQITIICPMIFNYFPLDTQVCKFQ 124
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold697_size109876-snap-gene-0.18 (protein:Tk05844 transcript:maker-scaffold697_size109876-snap-gene-0.18-mRNA-1 annotation:"hypothetical protein BRAFLDRAFT_79146") HSP 1 Score: 46.2098 bits (108), Expect = 3.356e-7 Identity = 22/75 (29.33%), Postives = 39/75 (52.00%), Query Frame = 0 Query: 36 QPVEL--ELVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKFQ 108 +P+EL E +G W DS K ++S++ + L + I + + T + CPM++ +PMD QTC+ + Sbjct: 119 KPIELDPEAIGDFWSPDSYFHHAKDSKTVSLVKKPASLRINPDKMIKYTMMTMVTIGCPMSFHMYPMDQQTCRLE 193
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold487_size158652-snap-gene-0.40 (protein:Tk00172 transcript:maker-scaffold487_size158652-snap-gene-0.40-mRNA-1 annotation:"gamma-aminobutyric acid receptor subunit delta-like") HSP 1 Score: 45.8246 bits (107), Expect = 4.934e-7 Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 0 Query: 42 LVGKLWLXDSEILRLKSFHSLSVLDRLQGLWMTLRHGILFVLATRIRFMCPMNYAKFPMDTQTCKF 107 L+ +LW+ D EI L++F S SVL + GL + + + + + F C M + +P D+ TC F Sbjct: 159 LLRELWMPDMEIYGLENFGSKSVLKEMSGLRIKRDKIVEYNIKVTVTFSCRMVFDDYPFDSHTCTF 224 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000546 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 13
Pagesback to top
BLAST of EMLSAG00000000546 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000000546 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000000546 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000546 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000546 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000546 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s108:207826..219456+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000546-683312 ID=EMLSAG00000000546-683312|Name=EMLSAG00000000546|organism=Lepeophtheirus salmonis|type=gene|length=11631bp|location=Sequence derived from alignment at LSalAtl2s108:207826..219456+ (Lepeophtheirus salmonis)back to top Add to Basket
|