EMLSAG00000000560, EMLSAG00000000560-683326 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000560
Unique NameEMLSAG00000000560-683326
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953498|gb|GAXK01005055.1| (TSA: Calanus finmarchicus comp349077_c3_seq12 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.747e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953504|gb|GAXK01005049.1| (TSA: Calanus finmarchicus comp349077_c3_seq6 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.832e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953508|gb|GAXK01005045.1| (TSA: Calanus finmarchicus comp349077_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.877e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953500|gb|GAXK01005053.1| (TSA: Calanus finmarchicus comp349077_c3_seq10 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.945e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953505|gb|GAXK01005048.1| (TSA: Calanus finmarchicus comp349077_c3_seq5 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.034e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953509|gb|GAXK01005044.1| (TSA: Calanus finmarchicus comp349077_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.081e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953493|gb|GAXK01005060.1| (TSA: Calanus finmarchicus comp349077_c3_seq17 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.126e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953497|gb|GAXK01005056.1| (TSA: Calanus finmarchicus comp349077_c3_seq13 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.271e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953502|gb|GAXK01005051.1| (TSA: Calanus finmarchicus comp349077_c3_seq8 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.373e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953506|gb|GAXK01005047.1| (TSA: Calanus finmarchicus comp349077_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.428e+0
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83
            I+D+ SSN+ LH  +   LS   P++       Q + N +N  +I  V IR +++++N
Sbjct:  171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
[Close]
BLAST of EMLSAG00000000560 vs. L. salmonis peptides
Match: EMLSAP00000000560 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1091:49636:51528:-1 gene:EMLSAG00000000560 transcript:EMLSAT00000000560 description:"snap_masked-LSalAtl2s1091-processed-gene-0.4")

HSP 1 Score: 234.572 bits (597), Expect = 1.856e-80
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS 114
            MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS
Sbjct:    1 MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS 114
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000560 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000560 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19
Match NameE-valueIdentityDescription
gi|592953498|gb|GAXK01005055.1|2.747e+031.03TSA: Calanus finmarchicus comp349077_c3_seq12 tran... [more]
gi|592953504|gb|GAXK01005049.1|2.832e+031.03TSA: Calanus finmarchicus comp349077_c3_seq6 trans... [more]
gi|592953508|gb|GAXK01005045.1|2.877e+031.03TSA: Calanus finmarchicus comp349077_c3_seq2 trans... [more]
gi|592953500|gb|GAXK01005053.1|2.945e+031.03TSA: Calanus finmarchicus comp349077_c3_seq10 tran... [more]
gi|592953505|gb|GAXK01005048.1|3.034e+031.03TSA: Calanus finmarchicus comp349077_c3_seq5 trans... [more]
gi|592953509|gb|GAXK01005044.1|3.081e+031.03TSA: Calanus finmarchicus comp349077_c3_seq1 trans... [more]
gi|592953493|gb|GAXK01005060.1|3.126e+031.03TSA: Calanus finmarchicus comp349077_c3_seq17 tran... [more]
gi|592953497|gb|GAXK01005056.1|3.271e+031.03TSA: Calanus finmarchicus comp349077_c3_seq13 tran... [more]
gi|592953502|gb|GAXK01005051.1|3.373e+031.03TSA: Calanus finmarchicus comp349077_c3_seq8 trans... [more]
gi|592953506|gb|GAXK01005047.1|3.428e+031.03TSA: Calanus finmarchicus comp349077_c3_seq4 trans... [more]

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BLAST of EMLSAG00000000560 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005601.856e-80100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1091:4963... [more]
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BLAST of EMLSAG00000000560 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000560 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000560 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000560 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1091supercontigLSalAtl2s1091:49636..51528 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1091-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000560 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000560EMLSAT00000000560-696407Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1091:49636..51528-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000560-683326 ID=EMLSAG00000000560-683326|Name=EMLSAG00000000560|organism=Lepeophtheirus salmonis|type=gene|length=1893bp|location=Sequence derived from alignment at LSalAtl2s1091:49636..51528- (Lepeophtheirus salmonis)
ATGCTTGTACATATACATATATTTGTTTTAATCAGACTAAAAGCTAATAC
TTAATATTTATTGCATGTGATTATGTTGTTGAAAATGTTCTTTTCTTTTA
TAATTCATTTGTCCTTGGAGTACTATTTGAGTAAGGAATTCTAATATGGA
GAGATCGGAGACAAGTGCCCCTTTTTCGCCAGCTTAAAAAAAGTTTTACC
CATTAAATTTACAATCTATTTTAATAAAGCAAAGTATTTTTGTCCGTCAG
TGGAAGACTGACATTTTTGCGTCTGTAAATCTAGCTATATGTTGTATGCT
AAAGAGCAGTGAAGAAAACTGATGCCTTTTTTAGCTAGCCTGATTTTTTT
TTTTTTTGAAGTTGTGAAATGTGAATTTTCTTTTTCTTACCTCCTGTCAT
TATTATTTAATTTCTGTGGAGTTGAACTTCCTGATACAACCCATCATAAA
TGTATGCGAAACCGTAATTAAACATTTGCTTGTACTCATAAAAGACAGAA
AGTAACTATCAGTATATTTTTTGCATCGTTATAGTTGTAAGCTCTTGTTA
GACTCGAGAGTAGAATTAAGCATCTACGTCAGAGTTATCCTTACCTATGT
CCTTGTATATTTGTTAAAATAGCCAAAAATTACACCATTAATCAATCAAT
CATTTACGGCAGGGATTCTCAACCTTTTTTAGTAATATACCACTCGTAAA
ATATTATTTATTTAAACCAAGTACCCCCTTACCTGCACGAACCATTTTTA
ACTTTAGTGACAGGGACTTCACAGAATTTATTATTATTTTTTAAAGGAGG
AATTTGTTTTAGAAAATCCAAAAAAAAATTCAAATATTAAATTTTTTTCA
AAAAAAAATTTAAAAATCTACATCTATACACAAAAAATTACACAAATCCA
CTGCTATTCACAAAAATGTTTATATATTATTTATAAATTATTTAATTTGG
GGGTGGGGAGGCTACATCCCCTTTAGTACCCACCCTACAGACGCCCTTCA
AGTATGTACCACTTGTAAAATATTCTTTCAAAATCTCAAGTACCACAAGG
GGTACGCATACCCCCATTTTGAGAACCACTGATTGGTTGCATTATTTGTA
TAGGAAGTACAATAAATCCTTTATCAAAAAATAATTTTTTTAAACATAAA
ATAGTGGGGGGGGGGGGGGGGGGTGGAAAATTWTGATTTATTTTCTAAAA
ATTTATAGAAGAAAAAGGTAATTCTATCATTCTATCAAATTATGCACCTG
ATTAAAAAATTTAACTTGAGTAATTTTTTCCTTAAATTACAAAAAACCTT
ATATTTTTTAGAGATGATATTAGTTATTATTGACTTATTTTGCTAACTAT
CCATTGATTTGGGGCCTCTTCCCTCATTCTTTTTAAATAAAAGTTTGCAG
GCTACAATATATGTAACAGCGTGTATTTTCACATCCCCACACTAAGCATG
CTACAAGTGTGTTACTATTTCTTCAGGTGTGTCACTCAACAACTATATGT
GTGTACTTATCAATTTCATTTCTATTACAGGGCTGTAACGTGACGCCAAT
ACCTCACTCACTCACTCACTCCTTAATGAATGGAAGAGGAGGTAAAAGAC
ATATCGGCATTGTGGATTCAAAGTGATCATAGAGAAATAACTTGATTTCC
TTCAGGAGTAGCAATAATCCTCTTCATTTATTTGAAAACGCTTTGCTCTC
CTCTATTTTCCCTCACTCCCTTCAAAATATGATGAACGCAAGAAATGCTC
AGAGAATATGTTCTGTAATGATACGACGAAAACAAACGATTGTTAATAAC
TTCCTAGAGTTTTTGGGAAGTTCTACAACTCCTACTACGTTTAGAGCAAT
AGCCACCCAGGAAGAAGAATTTGTTGTGACTTTGTCAAGCTGA
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