EMLSAG00000000575, EMLSAG00000000575-683341 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592912074|gb|GAXK01046301.1| (TSA: Calanus finmarchicus comp581353_c0_seq1 transcribed RNA sequence) HSP 1 Score: 150.599 bits (379), Expect = 6.332e-39 Identity = 110/323 (34.06%), Postives = 159/323 (49.23%), Query Frame = 0 Query: 3 VHNLKSPGPGSVYRVTEIKEGSDVLLVIQRGNNEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALG-RIKSINRFNYTELREWEVAK--VVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENL-IPKGIFC-QXXXXXXXXXXXXEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320 V NL +V + + E L V +N CS+ T GFG TGI C S P ECFCW+ C PY+ L ++ T+ G K I + L W V K + + ++V R+K + P + G G + + + + Y + F+ + I NL P GIFC + + PD +QFSV+IETI K+ VSY++ ++DL+H LVS KF+P+ HS PSIF S +++ L ++NI+HDF +GLQYT++ RTGNCS+Q I T +A +D RLK A E Sbjct: 1887 VKNLDDNREYTVSELHSVDEEMSKLTVKDPQHNATSTCSFHT-GGFGQATTGIRCRTSRNFPEECFCWDKVCKHPYLPLHKVFLKFTSQGGDFKQI----FPGLFTWNVEKQDLKLNATFKVV-------RNKFLY-PLDISIEGF--GYAIGSKQDTARLKYSVILFQ------PEDPDPISAGHVFNLQPPDGIFCPRSTIHPPQTFPDFPNQFSVQIETIQKDSRKVSYSQHHYDLKHKLVSMKFSPRPHSS-PSIFLSTLSLAPHLLPQTYNIIHDFNTGLQYTVSDRTGNCSVQPISPTYSDAAKLDGRTVRLKLAYE 2789
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592761044|gb|GAXK01193369.1| (TSA: Calanus finmarchicus comp1252349_c0_seq1 transcribed RNA sequence) HSP 1 Score: 132.494 bits (332), Expect = 6.594e-33 Identity = 94/295 (31.86%), Postives = 144/295 (48.81%), Query Frame = 0 Query: 35 NEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGRIKSINRFNYTELREWEVAK--VVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFE-----FLTTSRDDGKRNIFLSEEENLIPK-GIFC-QXXXXXXXXXXXXEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320 N C T +GFGH TG+ C+ S LP ECFCW+ C P++ L + L + K R N+ W++ + S +V E+ P ++ G + + + Y I FE L N+F +L P G+FC + R P+ +QFSV+IETI+K V Y++ +DLRH LVS +F+P+ HS PSIF + +++ L ++NI+HDF +GLQ+T++ GNCS+Q I L +A +++ R+K AKE Sbjct: 1229 NATSTCMMHT-SGFGHATTGVRCKTSRNLPEECFCWDGLCKHPFLPFYSL---VNKLLKQKEDLRANHPGYFSWDIDNNGIKINSTFHLVNER--------FLFPLELFVESF--GYILGSKRDVARLKYSIIQFEPSDPYSLREQIQPTGPNVF-----DLQPMPGVFCPRSSIHPPRVFPEFPNQFSVEIETIEKNADKVFYSQHRYDLRHKLVSMRFSPQPHSS-PSIFLTTLSLAPHLLPQTYNIIHDFNTGLQFTVSDWAGNCSVQPISLGFGDAAILEKKSVRIKLAKE 2053
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592898934|gb|GAXK01059441.1| (TSA: Calanus finmarchicus comp1977420_c0_seq1 transcribed RNA sequence) HSP 1 Score: 72.0182 bits (175), Expect = 2.337e-13 Identity = 68/247 (27.53%), Postives = 112/247 (45.34%), Query Frame = 0 Query: 15 YRVTEIKEGSDVLLVIQRGN---NEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGR--IKSINRFNYTELREWEVAK--VVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKR-------NIFLSEEENLIPK-GIFCQXXXXXXXXXX-XXEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKF 245 Y+V E+ D + I + N C++ T +GFG TG+ C+ S LP ECFCW+ CS P++ L+ + G ++S + L W++ + + + ++ DDR P +H G G + + + Y + +F + D ++ N+F +L P GIFC I R + QFSV+IET+ K+ V Y++ ++DL+H LVS KF Sbjct: 70 YKVQEVHINDDEISRISVKDPQRNATSDCTFHT-SGFGLATTGVRCKASRNLPEECFCWDGVCSHPFLPFYMLVNKLLKWGEDLVES-----HPGLLRWQMDRDGIKINATFTVI-----DDR---YIFPIMIHVEG--NGYSLGSKQDVARLKYS--TIQFQPSDPVDLRQHNQPRGFNVF-----DLQPSPGIFCPTTSIRLSRTFPEFPSQFSVQIETVQKDKRRVFYSQHHYDLKHKLVSMKF 741
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592759095|gb|GAXK01195318.1| (TSA: Calanus finmarchicus comp2033015_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 7.112e-5 Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0 Query: 271 SFNIVHDFESGLQYTINQRTGNCSIQKIPLTSP--------EAELVDSTHA-----RLKHAKE 320 ++NI+HDF++GLQY ++++T NCS+Q P+T+ +AE D+ A RLK AKE Sbjct: 42 TYNIIHDFKTGLQYIVSEQTSNCSVQ--PITAEYGDAVQPIKAEYGDAVTAHGKSVRLKLAKE 224
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592861750|gb|GAXK01095812.1| (TSA: Calanus finmarchicus comp7169241_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 1.667e-4 Identity = 19/51 (37.25%), Postives = 26/51 (50.98%), Query Frame = 0 Query: 46 TGFGHRITGIS----CEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALG 92 +GFG TG+ C+ S LP ECFCW+ CS P+ L+ + G Sbjct: 148 SGFGLAATGVRLGVRCKSSHNLPEECFCWDGVCSHPFFPFYSLVDKMLKHG 300
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592805457|gb|GAXK01149111.1| (TSA: Calanus finmarchicus comp2565703_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 4.110e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 272 FNIVHDFESGLQYTINQRTGNC---SIQKIPLTSP 303 F +++ F +G+ Y N +TGNC ++ IPL P Sbjct: 204 FKLLNVFSAGIMYFNNMKTGNCFRTTLTYIPLNGP 308
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592754017|gb|GAXK01200396.1| (TSA: Calanus finmarchicus comp307120_c0_seq11 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 7.968e+0 Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 Query: 210 EDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIF 257 ++ FS + + S S+ +Q+FD+ LVSF F K FPS F Sbjct: 1710 DEMFSASMTSFRLTLFSASFIKQSFDIVIFLVSFLFTFKDWFCFPSFF 1853
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592754020|gb|GAXK01200393.1| (TSA: Calanus finmarchicus comp307120_c0_seq8 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.492e+0 Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 Query: 210 EDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIF 257 ++ FS + + S S+ +Q+FD+ LVSF F K FPS F Sbjct: 1710 DEMFSASMTSFRLTLFSASFIKQSFDIVIFLVSFLFTFKDWFCFPSFF 1853
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592754021|gb|GAXK01200392.1| (TSA: Calanus finmarchicus comp307120_c0_seq7 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.492e+0 Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 Query: 210 EDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIF 257 ++ FS + + S S+ +Q+FD+ LVSF F K FPS F Sbjct: 1710 DEMFSASMTSFRLTLFSASFIKQSFDIVIFLVSFLFTFKDWFCFPSFF 1853
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Match: gi|592754022|gb|GAXK01200391.1| (TSA: Calanus finmarchicus comp307120_c0_seq6 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 8.492e+0 Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 Query: 210 EDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIF 257 ++ FS + + S S+ +Q+FD+ LVSF F K FPS F Sbjct: 1710 DEMFSASMTSFRLTLFSASFIKQSFDIVIFLVSFLFTFKDWFCFPSFF 1853
BLAST of EMLSAG00000000575 vs. L. salmonis peptides
Match: EMLSAP00000000575 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1097:5804:46829:-1 gene:EMLSAG00000000575 transcript:EMLSAT00000000575 description:"maker-LSalAtl2s1097-augustus-gene-0.8") HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 Query: 1 MKVHNLKSPGPGSVYRVTEIKEGSDVLLVIQRGNNEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGRIKSINRFNYTELREWEVAKVVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFCQRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320 MKVHNLKSPGPGSVYRVTEIKEGSDVLLVIQRGNNEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGRIKSINRFNYTELREWEVAKVVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFCQRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE Sbjct: 1 MKVHNLKSPGPGSVYRVTEIKEGSDVLLVIQRGNNEIKKCSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGRIKSINRFNYTELREWEVAKVVPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFCQRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320
BLAST of EMLSAG00000000575 vs. nr
Match: gi|1067067513|ref|XP_018017825.1| (PREDICTED: uncharacterized protein LOC108674397 [Hyalella azteca]) HSP 1 Score: 107.457 bits (267), Expect = 3.548e-22 Identity = 76/285 (26.67%), Postives = 131/285 (45.96%), Query Frame = 0 Query: 40 CSYSTVTGFGHRITGISCEPSVGLPAECFCWNDKCSTPYVSLSELLQSITALGRIKSINRFNYTELREWEVAKV---VPXSYLRIVYEKDRDDRDKISWIPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFCQRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPED-SFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320 C + T T G + G+ C LP CF +D PYVS++ L+ ++ E+ W A V ++ I D + SW+ ++FS G+ A ++ + Y + + L S D + P G+ C P R+ +P + +QF++ +ET+ + +++Y Q++D VS+ + P H+ +F D ++ +VHDF +G+QY I++ + NCSI+ IPLT+ +A LVD+ RL+HA E Sbjct: 121 CIFDTFTNEGFTLDGMKCGRQKDLPQRCFS-SDHKRRPYVSVAALMSFLSRHNASVHQESLGAVEVSVWSAAHANMSVEAAFSNISLPDDAPGAE--SWLT-PLYFSLAGDGSVFLAEAGNIELQYRVLAALPLQDSVAD----------LTITPPGVLC--PIDERKYLPKLANQFTLTMETVIENLGTIAYEHQSYDSEEKFVSYTYRPHLHAQ-DMMFVHNVPRRENFTADRTYRVVHDFRTGVQYIIDETSSNCSIEYIPLTALDATLVDNQTIRLRHASE 388
BLAST of EMLSAG00000000575 vs. nr
Match: gi|919055896|ref|XP_013409792.1| (PREDICTED: uncharacterized protein LOC106173269 [Lingula anatina]) HSP 1 Score: 68.9366 bits (167), Expect = 2.227e-9 Identity = 49/187 (26.20%), Postives = 89/187 (47.59%), Query Frame = 0 Query: 136 IPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFC-QRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAE-LVDSTHARLKHAKE 320 +P ++ +G +P T + + H++EF+ IF + PKG+ C R +I + +P+I DQF++ ET+ + SV ++ +D + F K S +++K + +HD+ +GL+Y I++ GNC+I IPL + + E + D H R+KH+ E Sbjct: 194 VPVRLAINGTSPNTRDPSGKLQPGSHEFRHNYEFIYYKPGAMDPTIFQT------PKGVVCPGRINI--KSLPNITDQFTLDGETVHQSSKSVDMIKEFYDFSAKMFRFDRKLKH-----STRRWNRNMTAKYGAANLKFIHDYNAGLEYVIDKEKGNCTIHPIPLLAWDGEQMPDHHHLRMKHSYE 367
BLAST of EMLSAG00000000575 vs. nr
Match: gi|919027062|ref|XP_013397328.1| (PREDICTED: uncharacterized protein LOC106164081 [Lingula anatina]) HSP 1 Score: 68.9366 bits (167), Expect = 2.343e-9 Identity = 49/187 (26.20%), Postives = 89/187 (47.59%), Query Frame = 0 Query: 136 IPWKVHFSGVAPGTEMRAMPQSVSVNYDIHSFEFLTTSRDDGKRNIFLSEEENLIPKGIFC-QRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAE-LVDSTHARLKHAKE 320 +P ++ +G +P T + + H++EF+ IF + PKG+ C R +I + +P+I DQF++ ET+ + SV ++ +D + F K S +++K + +HD+ +GL+Y I++ GNC+I IPL + + E + D H R+KH+ E Sbjct: 194 VPVRLAINGTSPNTRDPSGKLQPGSHEFRHNYEFIYYKPGAVDPTIFQT------PKGVVCPGRINI--KSLPNITDQFTLDGETVHQSSKSVDMIKEFYDFSAKMFRFDRKLKH-----STRRWNRNMTAKYGAANLKFIHDYNAGLEYVIDKEKGNCTIHPIPLLAWDGEQMPDHHHLRMKHSYE 367
BLAST of EMLSAG00000000575 vs. nr
Match: gi|1126180896|ref|XP_019622904.1| (PREDICTED: uncharacterized protein LOC109468968 [Branchiostoma belcheri]) HSP 1 Score: 67.0106 bits (162), Expect = 1.117e-8 Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 0 Query: 190 IPKGIFC-QRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQFAISSKLPEDSFNIVHDFESGLQYTINQRTGNCSIQKIPLTSPEAELVDSTHARLKHAKE 320 IP G+ C RP + + +PDI + FS + E + K VSY ++ +D + LV + + P S S S+ D+ +VHDF +G++Y + +GNC+ + I TS ++E VD R+++ E Sbjct: 257 IPAGVVCPGRPPV--KPLPDIPNAFSYRSEILVKYNFVVSYIDEYYDYNNKLVRYDYKPLSAS------------SNSFGTDNEIVVHDFRTGIEYLTDAISGNCTTRPISNTSFDSEAVDPYTIRMRNKFE 374
BLAST of EMLSAG00000000575 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold12_size759060-snap-gene-5.12 (protein:Tk05578 transcript:maker-scaffold12_size759060-snap-gene-5.12-mRNA-1 annotation:"hypothetical protein BRAFLDRAFT_118423") HSP 1 Score: 103.99 bits (258), Expect = 7.738e-27 Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 0 Query: 191 PKGIFCQRPDIYRRRIPDIEDQFSVKIETIDKEGASVSYTEQNFDLRHNLVSFKFAPKSHSIFPSIFFSQF-AISSKLPEDS--FNIVHDFESGLQYTINQR 289 P G+FC RPDIYRR++PDI + F+ IET+D+ + VSY+ Q++D +N+VS KF+P+ H++ IFF + +I E S F ++HDF +GLQYTIN+R Sbjct: 93 PPGVFCPRPDIYRRQLPDIPEHFATTIETVDEGDSIVSYSHQSYDYDNNIVSMKFSPRPHNVQRPIFFIRVPSIYGDFGESSRAFTVIHDFNTGLQYTINKR 194 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000575 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000575 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000000575 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000575 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000575 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000575 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 4
BLAST of EMLSAG00000000575 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1097:5804..46829- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000575-683341 ID=EMLSAG00000000575-683341|Name=EMLSAG00000000575|organism=Lepeophtheirus salmonis|type=gene|length=41026bp|location=Sequence derived from alignment at LSalAtl2s1097:5804..46829- (Lepeophtheirus salmonis)back to top Add to Basket
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