EMLSAG00000000577, EMLSAG00000000577-683343 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000577
Unique NameEMLSAG00000000577-683343
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000577 vs. C. finmarchicus
Match: gi|592810284|gb|GAXK01144284.1| (TSA: Calanus finmarchicus comp1490550_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.870e+0
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   10 LHGTCRFTDYGELSFIVVILLNTSLKWTS 38
            L+  C+  D  E +   +ILL TSL+WTS
Sbjct: 5415 LNWDCQLKDRFESTLERIILLTTSLEWTS 5501
[Close]
BLAST of EMLSAG00000000577 vs. C. finmarchicus
Match: gi|592943090|gb|GAXK01015463.1| (TSA: Calanus finmarchicus comp3849973_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 8.993e+0
Identity = 10/41 (24.39%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:   23 SFIVVILLNTSLKWTSQHTSLPRKNSNFS--RNLVEDALQL 61
            +++V+++L+ +++WT Q      K  NF+  +N++E+ + +
Sbjct:  138 AWLVLVVLSCTVQWTYQSACAMLKKLNFAG*KNVIEEGVPI 260
[Close]
BLAST of EMLSAG00000000577 vs. L. salmonis peptides
Match: EMLSAP00000000577 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10981:195:432:-1 gene:EMLSAG00000000577 transcript:EMLSAT00000000577 description:"maker-LSalAtl2s10981-snap-gene-0.2")

HSP 1 Score: 127.487 bits (319), Expect = 4.773e-40
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 MFYLFEIGTLHGTCRFTDYGELSFIVVILLNTSLKWTSQHTSLPRKNSNFSRNLVEDALQL 61
            MFYLFEIGTLHGTCRFTDYGELSFIVVILLNTSLKWTSQHTSLPRKNSNFSRNLVEDALQL
Sbjct:    1 MFYLFEIGTLHGTCRFTDYGELSFIVVILLNTSLKWTSQHTSLPRKNSNFSRNLVEDALQL 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000577 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000577 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592810284|gb|GAXK01144284.1|8.870e+044.83TSA: Calanus finmarchicus comp1490550_c0_seq2 tran... [more]
gi|592943090|gb|GAXK01015463.1|8.993e+024.39TSA: Calanus finmarchicus comp3849973_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000577 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005774.773e-40100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10981:195... [more]
back to top
BLAST of EMLSAG00000000577 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000577 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000577 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000577 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10981supercontigLSalAtl2s10981:195..432 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s10981-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000577 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000577EMLSAT00000000577-696424Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10981:195..432-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000577-683343 ID=EMLSAG00000000577-683343|Name=EMLSAG00000000577|organism=Lepeophtheirus salmonis|type=gene|length=238bp|location=Sequence derived from alignment at LSalAtl2s10981:195..432- (Lepeophtheirus salmonis)
ATGTTCTACCTGTTCGAGATAGGCACACTTCATGGAACATGTCGGTTTAC
GGACTATGGTGAACTTAGTTTCATTGTGGTGATCCTTCTCAATGTAATCT
CTGTCCATTTTATCATCAATTATATATTAAAATTATTTCTTGTAGACTTC
CTTAAAATGGACCTCTCAACATACGTCACTACCAAGAAAAAATTCGAATT
TCTCAAGAAATCTCGTGGAGGATGCACTTCAGCTATGA
back to top
Add to Basket