EMLSAG00000000579, EMLSAG00000000579-683345 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000579
Unique NameEMLSAG00000000579-683345
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000579 vs. C. finmarchicus
Match: gi|592806036|gb|GAXK01148532.1| (TSA: Calanus finmarchicus comp229663_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.913e+0
Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 0
Query:    4 QDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFH 56
            Q P++L  I   D   ++ F   HG +G +C+N T   Y+  + +   SGS H
Sbjct:  792 QLPEELVYI---DIFSQYTFQHFHGNKGLSCLNFTLLDYLLNVTE---SGSIH 932          
BLAST of EMLSAG00000000579 vs. C. finmarchicus
Match: gi|592806037|gb|GAXK01148531.1| (TSA: Calanus finmarchicus comp229663_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.917e+0
Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 0
Query:    4 QDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFH 56
            Q P++L  I   D   ++ F   HG +G +C+N T   Y+  + +   SGS H
Sbjct:  804 QLPEELVYI---DIFSQYTFQHFHGNKGLSCLNFTLLDYLLNVTE---SGSIH 944          
BLAST of EMLSAG00000000579 vs. C. finmarchicus
Match: gi|592806026|gb|GAXK01148542.1| (TSA: Calanus finmarchicus comp229663_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.387e+0
Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 0
Query:    4 QDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFH 56
            Q P++L  I   D   ++ F   HG +G +C+N T   Y+  + +   SGS H
Sbjct:   16 QLPEELVYI---DIFSQYTFQHFHGNKGLSCLNFTLLDYLLNVTE---SGSIH 156          
BLAST of EMLSAG00000000579 vs. C. finmarchicus
Match: gi|592930952|gb|GAXK01027601.1| (TSA: Calanus finmarchicus comp7750036_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.084e+0
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 0
Query:   10 PIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKI 46
            PI+L     LR  F + H +R ++ +NLTS G+ + +
Sbjct:  195 PILLHH**QLRITFAKHHVRRFFSSVNLTSGGFYQHL 305          
BLAST of EMLSAG00000000579 vs. L. salmonis peptides
Match: EMLSAP00000000579 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10987:7:1255:1 gene:EMLSAG00000000579 transcript:EMLSAT00000000579 description:"snap_masked-LSalAtl2s10987-processed-gene-0.0")

HSP 1 Score: 151.754 bits (382), Expect = 3.537e-49
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query:    1 MTPQDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFHQSHIRPRSLWVLLRSL 72
            MTPQDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFHQSHIRPRSLWVLLRSL
Sbjct:    1 MTPQDPKKLPIILLRDWALRFFFLEDHGQRGWTCMNLTSSGYMEKIEDRNGSGSFHQSHIRPRSLWVLLRSL 72          
BLAST of EMLSAG00000000579 vs. L. salmonis peptides
Match: EMLSAP00000008995 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5641:3040:4160:-1 gene:EMLSAG00000008995 transcript:EMLSAT00000008995 description:"maker-LSalAtl2s5641-snap-gene-0.3")

HSP 1 Score: 46.9802 bits (110), Expect = 1.535e-8
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 0
Query:   24 LEDHGQRGWTCMNLTSSGYMEKIEDRNG 51
            ++ HGQRGW CMN+TSS YMEKI+  NG
Sbjct:   61 MKGHGQRGWMCMNITSSEYMEKIKYCNG 88          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000579 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000579 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592806036|gb|GAXK01148532.1|1.913e+032.08TSA: Calanus finmarchicus comp229663_c0_seq2 trans... [more]
gi|592806037|gb|GAXK01148531.1|1.917e+032.08TSA: Calanus finmarchicus comp229663_c0_seq1 trans... [more]
gi|592806026|gb|GAXK01148542.1|3.387e+032.08TSA: Calanus finmarchicus comp229663_c1_seq1 trans... [more]
gi|592930952|gb|GAXK01027601.1|4.084e+035.14TSA: Calanus finmarchicus comp7750036_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000579 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000005793.537e-49100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10987:7:1... [more]
EMLSAP000000089951.535e-867.86pep:novel supercontig:LSalAtl2s:LSalAtl2s5641:3040... [more]
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BLAST of EMLSAG00000000579 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000579 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000579 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000579 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10987supercontigLSalAtl2s10987:7..1255 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s10987-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000579 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000579EMLSAT00000000579-696426Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10987:7..1255+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000579-683345 ID=EMLSAG00000000579-683345|Name=EMLSAG00000000579|organism=Lepeophtheirus salmonis|type=gene|length=1249bp|location=Sequence derived from alignment at LSalAtl2s10987:7..1255+ (Lepeophtheirus salmonis)
AAACAGGCAAGGCTTTTGGTCACCCATGAAAGGTAGGGTATAAAGAATCC TGCGACGAGGTATTACTCCACACAGGAAGAAGTACTCGCAGCTTTAGAAG CCTGGTGCTACTGAAAGTACGCCAAGGTAACGGCAAGGAATTACTTCAGA ACTGGGAGTCATTTATTTGTCTATGTACAGGACAGAGTACCTGGGTTCAC CATTGAGGGCCTTCTTTGGAAATTCTATATTCGGGCCGTCGGCATTCCTC CAACCTAAGTTTTGGAATATTTGGAGGACCTTCGAGGTGGGTATTGTGTG ATACATAAAAAAAAGAACATTGCTGCCGTTATTGACCATTTTATGAATGC AATTGGTAATTATGCAAATCCCATCCTGATGGAAATGAGTCATCATATTC TACTTAACTTCAATATCGAATGATGTAGGCAGGGAAGGTTGCAAGGATAG CGCACAACACTGCAATCGTTCGTGTCAATAAGGGGGGATATTTTTTCATG CGACCTTTTGACGTGGTCGTCCTCCTGTCTCAATTCCGTTGATCTTCACA ACTAGCTAAGGCTGTGCAAAATATGACTCCGCAGGATCCAAAAAAATTGC CGATAATTTTACTAAGAGATTGGGCATTGCGCTTTTTCTTTTTAGAGGAT CACGGTCAAAGGGGATGGACCTGCATGAATCTCACGTCTTCTGGGTATAT GGAAAAGATTGAGGACCGTAATGGGTCCGGATCTTTTCATCAAAGTCACA TAAGACCAAGGAGTCTATGGGTCCTGCTAAGATCATTGTAAATGATAGCC TAGCAATTATACTTCTAAGCCTTTACGCATTAAGGGAATTGGAACTTCTT CGGATGTCTGATTTCTTCTTTCGTATTCGGAGTGGAAYCGTAAGTCATGA GGAACTCTATGGAGATTCTCAGGGGGCAGATGCTCCATTCGGCCATCAGT GATCCCTATGACAAAGGACTGTAAGAAAATCCTTTGCTGCCCAGCGTGTA CCTGGGCTCAGGTGYAGGTTCGCTTGAGTCATGTCTCATTCCAGTGTGAC GTCCAAGGGACTTTAACTCGTGGATAAGGACCATAGAGACCAAACGTTTA GTAAATGATGTCTTGGGCAAGTTTGTAAGTATCATTAATTAAGTATTATT TAATTTATCATTTTAATTTTGCAGTTACAAAGTAATGATAATCTCGAGTC TTTAAAGAGTCATATTAAAGATCTCAATTTGGCTCATATATGTCTATAG
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