EMLSAG00000000584, EMLSAG00000000584-683350 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000584
Unique NameEMLSAG00000000584-683350
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000584 vs. C. finmarchicus
Match: gi|592850527|gb|GAXK01107017.1| (TSA: Calanus finmarchicus comp37918_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.181e+0
Identity = 22/76 (28.95%), Postives = 40/76 (52.63%), Query Frame = 0 
Query:  198 EKASEDTIEEVNDNQKYAKVPPEMENKVEGECVAGGPILPKESITTSKSLPMY----QNDPV--EXVKNAVLKPIT 267
            EKA++  IE++  ++++  VP E E  + GE +    ILP  ++   K++  +     NDP   + +   +LKP T
Sbjct: 2861 EKANKIVIEKIRQDEEWENVPTEFECAIMGEMMEDPVILPSGNMCDRKNIERHILSTPNDPFNRQPLTEDMLKPAT 3088
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BLAST of EMLSAG00000000584 vs. L. salmonis peptides
Match: EMLSAP00000000584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:120377:122944:-1 gene:EMLSAG00000000584 transcript:EMLSAT00000000584 description:"maker-LSalAtl2s109-augustus-gene-1.24")

HSP 1 Score: 555.058 bits (1429), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0 
Query:    1 KEDSLKSVRDQTQNVSSSLDEVNFTTNDKISEKTKKRKKKKKSMILDIIRDISTENNLSGTFVPLKIKKEHKLDQSLKKEIELEESPKRKYSDIVLKSSFDEKVDKPSKNGVEKYQRYGSKKKNRKVGKSKEELVNLKVEKLRKDEDKQKKKMQRFEERHRQQLIDEYMDELEEIQNLKLLEEERALKSFNYDQSREEKASEDTIEEVNDNQKYAKVPPEMENKVEGECVAGGPILPKESITTSKSLPMYQNDPVEXVKNAVLKPITIPAWDATCPSSME 280
            KEDSLKSVRDQTQNVSSSLDEVNFTTNDKISEKTKKRKKKKKSMILDIIRDISTENNLSGTFVPLKIKKEHKLDQSLKKEIELEESPKRKYSDIVLKSSFDEKVDKPSKNGVEKYQRYGSKKKNRKVGKSKEELVNLKVEKLRKDEDKQKKKMQRFEERHRQQLIDEYMDELEEIQNLKLLEEERALKSFNYDQSREEKASEDTIEEVNDNQKYAKVPPEMENKVEGECVAGGPILPKESITTSKSLPMYQNDPVEXVKNAVLKPITIPAWDATCPSSME
Sbjct:    1 KEDSLKSVRDQTQNVSSSLDEVNFTTNDKISEKTKKRKKKKKSMILDIIRDISTENNLSGTFVPLKIKKEHKLDQSLKKEIELEESPKRKYSDIVLKSSFDEKVDKPSKNGVEKYQRYGSKKKNRKVGKSKEELVNLKVEKLRKDEDKQKKKMQRFEERHRQQLIDEYMDELEEIQNLKLLEEERALKSFNYDQSREEKASEDTIEEVNDNQKYAKVPPEMENKVEGECVAGGPILPKESITTSKSLPMYQNDPVEXVKNAVLKPITIPAWDATCPSSME 280
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000584 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000584 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592850527|gb|GAXK01107017.1|3.181e+028.95TSA: Calanus finmarchicus comp37918_c2_seq1 transc... [more]
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BLAST of EMLSAG00000000584 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005840.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:12037... [more]
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BLAST of EMLSAG00000000584 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000584 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000584 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000584 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:120377..122944 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s109-augustus-gene-1.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000584 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000584EMLSAT00000000584-696431Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:120377..122944-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000584-683350 ID=EMLSAG00000000584-683350|Name=EMLSAG00000000584|organism=Lepeophtheirus salmonis|type=gene|length=2568bp|location=Sequence derived from alignment at LSalAtl2s109:120377..122944- (Lepeophtheirus salmonis)
AAGGAAGATTCCTTGAAATCCGTTCGTGATCAAACACAAAATGTAAGTTC
GTCTCTAGACGAAGTAAATTTTACAACAAATGATAAAATTTCTGAAAAAA
CTAAAAAGCGCAAAAAAAAGAAAAAAAGTATGATTTTAGATATTATACGT
GATATTTCTACGGAAAATAATTTATCCGGTACCTTTGTGCCTTTAAAAAT
CAAAAAAGAACATAAATTAGATCAATCACTCAAAAAGGAAATAGAATTAG
AAGAAAGCCCCAAAAGAAAATATTCGGATATTGTTTTAAAGTCTAGTTTC
GATGAAAAAGTAGATAAACCCTCTAAAAATGGTGTTGAAAAATATCAAAG
ATATGGTTCTAAGAAAAAAAATAGAAAGGTTGGAAAAAGTAAAGAAGAGC
TTGTAAACCTCAAAGTTGAAAAATTAAGAAAAGATGAGGACAAACAGAAA
AAGAAAATGCAAAGGTTTGAAGAAAGACATAGACAACAATTGATCGACGA
ATATATGGATGAATTAGAGGAGATACAGAATCTAAAATTATTGGAGGAAG
AAAGAGCTTTAAAATCCTTCAACTACGATCAGTCCCGTGAAGAGAAAGCA
AGTGAAGATACAATAGAAGAAGTAAACGATAATCAGAAATACGCTAAGGT
TCCTCCTGAAATGGAAAATAAAGTAGAAGGAGAATGTGTGGCAGGGGGGC
CTATCTTACCTAAAGAAAGTATAACGAGTAAGTTACTTATTTAGCTCAGT
TATTTTCTATGTTAATTGATTAATTCTTTTTATATTACAGCATCCAAATC
ACTACCAATGTATCAAAATGACCCTGTGGAGANTGTAAAAAATGCAGTTT
TAAAACCTATTACTATACCAGCATGGGACGCCACTTGTCCATCCAGCATG
GAATAGATTGGGAAGCATCAAAAAATGATTACAAATATATGATAGCTCAA
ATACCAAGGCGCCTCTGTCAATATTGTAAAAAATATTTTGCAAGTTTGTA
CGTCTCTGTTTTCATCTGCCGTAAATTTGAATTAATTGACTCCTAATATT
TCTTTTTTAAACAGACCCAAACATGCTAAGAATTGTAAAAGCTCTAAGAG
TATTAATTTAAACCAGACCAAAAATAAGTCCGAAACATCACGTCCTTTAA
AGAAATCCCCGGAGGAATCGTACGAAAATTTCGTGGTCCACCTCAGGAAA
ATAATGGCTCCAACTATTGCAGTAAGTTACTCCAACTATGTAACAATTTT
TTTTAAATACTTGGAAGAGGTGGACTCAAACTTTCGTGCTGGCTCCTACT
TTGACAAGGACATTATTCCAACACCTATACCTGCAAATCAAATTCCGGTG
TATGTAATGTACAAAACGTCATCTATGATAGTCAATTTTTCACAGGCATT
GAATTCGTTCATGGACTATACTTTGTGCCTTATGAGAAAGACTGTGGACA
ATAAATTAAGGGCCCGCAGGTGTTTAGTGAMGGAGAWTMTAGCCGATGTA
AAGTTGGAGTTGGCCATGCTGCTTAAAGAACATTCCAAGATGATCTCCAT
TGAAAGCTCGGTAAATATGACTAAAGCAAAAAAAAAAATACAATGAATTA
TAATACAGGGTCATGTGATTCTCTGCCATACGTCCCATAATTGAACTGAT
GNCCATTATTGTACGCAATTGTAAAAGTGCATGTACTTACACATGTTCCT
GTAAGATAACATTTTAATTAATTTAGACAAAGATATGTTTGCTAATAGCT
CTGGGGGGCATTTGGTCTAATTTGTGAGTTCAAACAAAACTGCTTCATCT
AACAATTTCTCTTGAAGAGTTGTAAACCCAAATAGAAACTGAAGGGATGT
GCAACTCTGATTGTTAAAGTTTCTTCCGGGAAGGAGGAGGGTGCTCTCAT
TTCGGAATTTATCAAATTATTAAGGGTAATATTATTGGATTGTGGAACGA
GAGTAGAGTACGGCCCTCAATAAGAAACACTAAGACGACTGGAACAATCC
GAAAGGCATTTTTAACTCTTATTAATATTTATTATACTTTTTTAGGAGTC
TGAACCCGATTGTCTCGAGGAGGTGTTTAGAGATGGCCCTAAGAAAGAGC
CTCCCGAATTGGATGCAGAAAAAATTCCGTCTTCCTCTTCAAAAAAGAAG
AGAAAAAAGTCTGTAAGTTTTATATAAGTTTTTTTAAAATTTAAAATACA
TTAAATTAATGTAATTCTCATTTGATGGAACGATATTATATGTTTCGTGT
CTTCTAAAAATTCCTTTTTAGAGTCTTATAGCCAAATATAAAATTTATGA
CTGTTCAAACTCTGGTTGTAAAACAAGAGGAGTCTGGTTGTCTTTTTTTA
CTCTGGAATTCAATAATTTTTTTAGTGCACTTACCACTCAAATAAACTAT
TCTTTTTTTAGGTGTCCTACCCTCAAGTGGACCCAGAGAAAATAATATCG
TCTTCCTCTCTAAAAAAGAAGCGAAACAAATTTGTAAGTTTAATATTTAA
TACTTATTAAATTAGTATAATTGACATTTTATTTTCAGATCACGAAATCA
ACTGAAATACTACATTAA
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