EMLSAG00000000589, EMLSAG00000000589-683355 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000589
Unique NameEMLSAG00000000589-683355
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592933478|gb|GAXK01025075.1| (TSA: Calanus finmarchicus comp188704_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 1.942e-4
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 0 
Query:  111 HNEMKCSDQRCSCKGYLGID---VLFEPHGRLCVLPRISSEYIFQGHFHPGSRTSLSGAXXXXXXXXXXXXXXXXXXXXXRWCFKGSFTCKKGDYECEEDSYPGGGEAPLRRNDVHVAAWDLPSLDYLTEEEAALKY 244
            HN  KC D+ CSC  Y  ID   +L +P    C+LP   S+ I+       SR S +G+    ++  ++ F+ +     L         C+KG Y+C+         AP    + H+AAWD PSLDY+   E  + +
Sbjct:   59 HNGRKCEDRYCSC--YSSIDYATLLVDPSSLFCLLP---SDQIYP----VPSRGSGAGSLGLAVLGALIGFVCVVAGAALVMGAYKHCVCQKGVYQCD---------APADIPEDHIAAWDHPSLDYIPHGEEDIVF 415
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592939529|gb|GAXK01019024.1| (TSA: Calanus finmarchicus comp268078_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 1.409e-1
Identity = 17/40 (42.50%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:  196 TCKKGDYECEEDSYPGGGEAPLRRNDVHVAAWDLPSLDYL 235
             C+KGDY CE         + +   + H+AAWD PSLDY+
Sbjct:   47 VCQKGDYACE---------SSVDIPEEHIAAWDHPSLDYI 139
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592869303|gb|GAXK01088259.1| (TSA: Calanus finmarchicus comp159849_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.148e-1
Identity = 18/54 (33.33%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:   52 IRSLSSMRCSTDEHCFIESTGLYCRAFSSGGFCDCPLGYAYDPQECNCKQAEPC 105
            +  L  + C  +  C  E TG+ C      G CDCP   A++   C+C+QA  C
Sbjct:   61 LEQLQVVECEENSDCRAEDTGMECVK----GRCDCPPLLAFNVTSCSCQQAARC 210
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592769470|gb|GAXK01185098.1| (TSA: Calanus finmarchicus comp5736058_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.336e+0
Identity = 14/62 (22.58%), Postives = 32/62 (51.61%), Query Frame = 0 
Query:   25 KEVVQNCLNDPPNCTSYDCLAKSKSEDIRSL--SSMRCSTDEHCFIESTGLYCRAFSSGGFC 84
            +++++ C   P    S++  + + + + + +     RC+  + C  E + + CR+FS  GFC
Sbjct:  192 EDLIETCGQSPTKKVSFERTSATTTSETKCIFNDKGRCNKGQSCRFEHSDMVCRSFSKTGFC 377
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592843501|gb|GAXK01114043.1| (TSA: Calanus finmarchicus comp4843160_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 3.743e+0
Identity = 20/73 (27.40%), Postives = 36/73 (49.32%), Query Frame = 0 
Query:   15 SIQTSSSSIGKEVVQNCLNDPPNCTSYDCLAKSKSEDIRSLSSMR--CSTDEHCFIESTGLYCRAFSSGGFCD 85
            S+ T + +   E  +N ++  P  +      +SKS+D++   + R  C+  E CF   + + CR FS  G C+
Sbjct:   67 SVNTRTKTNPNEKEKNPVDVSPQPSVRRVEEQSKSKDVKCRHNDRAACNRGESCFFYHSKVVCRIFSRYGECE 285
[Close]
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Match: gi|592789152|gb|GAXK01165416.1| (TSA: Calanus finmarchicus comp5267609_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 7.563e+0
Identity = 15/53 (28.30%), Postives = 27/53 (50.94%), Query Frame = 0 
Query:   97 CNCKQAEPCSGSYCHNEMKCSDQRCSCKGYLGIDVLFEPHGRLCVLPRISSEY 149
            C+C+  E C+    H +++    RCSC  +L ++   +P  + C+L   S  Y
Sbjct:   23 CHCRSRETCTQILVHTKLQICLTRCSCMVFLHLE---DPLIQFCMLDHWSQGY 172
[Close]
BLAST of EMLSAG00000000589 vs. L. salmonis peptides
Match: EMLSAP00000000589 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:301994:306088:1 gene:EMLSAG00000000589 transcript:EMLSAT00000000589 description:"maker-LSalAtl2s109-snap-gene-3.31")

HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0 
Query:    1 MWRQIVCSIIILLFSIQTSSSSIGKEVVQNCLNDPPNCTSYDCLAKSKSEDIRSLSSMRCSTDEHCFIESTGLYCRAFSSGGFCDCPLGYAYDPQECNCKQAEPCSGSYCHNEMKCSDQRCSCKGYLGIDVLFEPHGRLCVLPRISSEYIFQGHFHPGSRTSLSGATIGLIVITVLVFLVITLSIILRWCFKGSFTCKKGDYECEEDSYPGGGEAPLRRNDVHVAAWDLPSLDYLTEEEAALKYIKKERRSPDEGSSLPECEQSHINAGYISDNN 275
            MWRQIVCSIIILLFSIQTSSSSIGKEVVQNCLNDPPNCTSYDCLAKSKSEDIRSLSSMRCSTDEHCFIESTGLYCRAFSSGGFCDCPLGYAYDPQECNCKQAEPCSGSYCHNEMKCSDQRCSCKGYLGIDVLFEPHGRLCVLPRISSEYIFQGHFHPGSRTSLSGATIGLIVITVLVFLVITLSIILRWCFKGSFTCKKGDYECEEDSYPGGGEAPLRRNDVHVAAWDLPSLDYLTEEEAALKYIKKERRSPDEGSSLPECEQSHINAGYISDNN
Sbjct:    1 MWRQIVCSIIILLFSIQTSSSSIGKEVVQNCLNDPPNCTSYDCLAKSKSEDIRSLSSMRCSTDEHCFIESTGLYCRAFSSGGFCDCPLGYAYDPQECNCKQAEPCSGSYCHNEMKCSDQRCSCKGYLGIDVLFEPHGRLCVLPRISSEYIFQGHFHPGSRTSLSGATIGLIVITVLVFLVITLSIILRWCFKGSFTCKKGDYECEEDSYPGGGEAPLRRNDVHVAAWDLPSLDYLTEEEAALKYIKKERRSPDEGSSLPECEQSHINAGYISDNN 275
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000589 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000589 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592933478|gb|GAXK01025075.1|1.942e-430.66TSA: Calanus finmarchicus comp188704_c0_seq1 trans... [more]
gi|592939529|gb|GAXK01019024.1|1.409e-142.50TSA: Calanus finmarchicus comp268078_c0_seq1 trans... [more]
gi|592869303|gb|GAXK01088259.1|3.148e-133.33TSA: Calanus finmarchicus comp159849_c1_seq1 trans... [more]
gi|592769470|gb|GAXK01185098.1|2.336e+022.58TSA: Calanus finmarchicus comp5736058_c0_seq1 tran... [more]
gi|592843501|gb|GAXK01114043.1|3.743e+027.40TSA: Calanus finmarchicus comp4843160_c0_seq1 tran... [more]
gi|592789152|gb|GAXK01165416.1|7.563e+028.30TSA: Calanus finmarchicus comp5267609_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000589 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005890.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:30199... [more]
back to top
BLAST of EMLSAG00000000589 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000589 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000589 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000589 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:301994..306088 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s109-snap-gene-3.31
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000589 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000589EMLSAT00000000589-696436Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:301994..306088+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000589-683355 ID=EMLSAG00000000589-683355|Name=EMLSAG00000000589|organism=Lepeophtheirus salmonis|type=gene|length=4095bp|location=Sequence derived from alignment at LSalAtl2s109:301994..306088+ (Lepeophtheirus salmonis)
ATGGATAAACAGAGAACATTTCAGTCTTCACCTGTCTTAAAACATTCAAG
CACATTGACTCATATGTATGTATTTGGGGAGGGTTTTTTGGTGAAGTGAA
TAAGACGAGGGTTCACCTTAGCACAAGTCCCACATACATACTACACGCAT
GTAGTTGCCGTTTTAAAAGTAGTAGTATGATGATAGTAGATGAAGGTTTT
TTAATTCTTAGTTATATTATATATAGTACATATGTACAGTTTTTTTAAAG
TTTTACTGTGTACGTGGTTGTTCGTTCTTCTGAATGGCACAAAGAATTCA
ATTCTTTTGATAGAAGAAAAAAGAGATCTCAATTGAATGTATGTAATAGT
CCTATAGTTGCATGTAATTCGATCCTTGAATATATAATAATTGAATTTAG
GAATTAAAACATACATCGTCTATTGGAAGTCATTATGCCTACATAAGTAC
ATACATACATTACAAGTAATTACATCCGTGTTGTTTCGATATGTGGCGGC
AAATAGTCTGTTCAATCATCATTCTTCTCTTCTCCATCCAAACTTCCTCC
TCATCCATTGGAAAAGAAGTCGTACAGAATTGCTTGAATGATCCTCCCAA
TTGTACTTCCTATGATTGCTTGGCTAAATCGAAAAGTGAGGATATTCGAA
GTTTATCTTCCATGCGTTGTTCCACGGATGAACATTGTTTTATTGAGAGT
ACAGGACTCTATTGTAGAGCATTTTCCAGTGGAGGTTTCTGCGACTGTCC
TCTAGGCTATGCCTATGATCCACAGGAGTGCAACTGTAAACAGGCTGAAC
CTTGCTCTGGGAGCTATTGTCACAATGAAATGAAATGTTCTGATCAGAGA
TGCTCCTGTAAGGGATATTTAGGAATAGATGTMCTCTTCGAGCCTCATGG
TCGACTCTGTGTTCTTCCAAGAATATCATCTGAATATATATTTCAAGGAC
ATTTTCATCCAGGAAGTCGTACGAGTCTCTCTGGAGCAACCATTGGGCTA
ATCGTGATAACAGTGTTAGTTTTTTTGGTAATTACTCTCTCAATCATTCT
GCGCTGGTGCTTTAAGGGCTCATTTACTTGCAAAAAGGGGGATTATGAAT
GTGAAGAAGATTCATATCCTGGAGGGGGTGAGGCTCCATTAAGGAGGAAT
GATGTCCATGTAGCTGCATGGGACCTTCCTTCTTTGGACTATTTAACCGA
AGAAGAAGCAGCCCTCAAATACATAAAAAAGGAGAGACGAAGTCCTGATG
AAGGTTCCTCCTTACCAGAGTGTGAGCAATCTCATATCAATGCTGGATAT
ATATCAGATAATAACTAAAAACCAGCTATGATTAAATTGGAAAAATATTG
ATAAAGTCGATATGACTCTAAGCACCCCCAAATTACGTATGTACCTAATA
TCTCACAAACATATCGAACTTTAAGGTGAATTTATCTCCAATTAAAGTTA
TAAAATACCTATTAAAATTATTAATAATAAGTTGTTTTTTAGACGCCATA
TAAGTACCCATATATTATATATTTTGTTATTTCAATTGATTTTTAAGTGA
AAATCGTCTTTTTAAGACTGTTGTATTCATAACTCGTTGTAGATATGTAA
TGAAATACATACTTTGATGATATATTTCGTAAAATTGTGTATATTTTACT
CATGGATAATTACTTTACATGTTTGGTAATTCGATTTTACTTTAATGATT
CAATTTGTTTATTATTTCTTGACAATTGCATGAAAGCTATCAATAAACTC
CAACATTTCCGTAATCACTTCCTTGTTTTTCAAAATGATGGGTGATGTGG
GATTCTGTTGACAGAAATTTCTAATTAAACTATAGCATTCCCATTGGCAT
TGTCGAGCATATTTTACATCTTTTGGTGGCTGCAATTTTCCGTATAATTT
CCCCAAGTGCAAGTAAGCCACTATAACAGAGATCCCTTCTTCAGAATCCG
TAATGCTGGGTAGGGTGAAAGATTCTACAAATTTTGTATAATTATGAATG
GCCAAAGATATAACAGTATTTCGTTGCTTTGAGTCTTCTTTTATTTTAAA
CATTTCTTCGTAGCTACGTCCTGACTCCATCCAAAGAGATCTAGATTCCT
CCATATAATGAGAGGGATTTAGAATTTTTAACACTTTATCCATCATTTCC
ACTTGTTTACGGTACGTTTTGTATTTTTTTTCTGGAGATGACTGGAATTT
TACAATCACATGTAGCATGGAGCACATACATTGGACAATTATGATATAGT
CAATACAATGATCATCCAGAGTGAAATACTTGGCGGCTAAATTAAGGGAT
TTACATCCAATAGTGTACATTGTAAGGGCTTCTTCTAGAGAAGTAACAGG
CTTAGTAGGAATCGACATCACATCTGGGTCAAGCTCAATAACGGAAGGAA
TGGGTACTTCCTTATCATTTGAGATCTCTTTCCGTTCCATTATTGACAAG
CAAAACTTTCCTAATTGTCCTTGAGCATTTGCAAAGATCCGAGGATATCT
TTCATACTCCATTGTCTCCTTCTTAGAACATATGGTAAATGTTATCGCAA
GATACTTTTTAGCGGTGAGGAACATAGAATTCTTCATTAAATGAGATAAA
ATACTCAAGGCTTTTTCACACCAATCAATTGGATCATAATTTCCAAGCTC
TAATTGCCTATCCAATGCATAAAGACATTTCTTTGCTGCTTCTTCGTGAA
GTCCCAACTTTTGATACGCATTGGCTAAAGCACAAGCTGTACAAAGATTT
GACGTTTCAAGTATGTAATTTGATTTTTGAAACGATGAAGGATCTAGCAG
AGAGTCTATGTTATGAAGATTATTACTTTTCGACGAATACTCAGTAAAGA
GATCATTTGCACTCTCTAAATGCTTTCTMCCTTCTTCATAACAAGCTCTA
TGTATCCAAATCCAACCTAACTGATTCAAAGCCTCTATTTCTTGTAAAAC
ACAAAGCTCTCTATTCTTGATATGAGTAAATTCTTCAAATGCTTTCTTTA
AATTTTCCTCTTGATCTGAAATTTCTTCTGAAATAGAATCAACATTGGCA
TGGATTGTCCAAAAAGTTCCTCTTAGAGAATAGCCATGATCATTTGAAAA
AGAGGATATTTTAACAACCATTTTCTTTATAATATTCCGAGCGGAATTAA
GTCTTTCACAATAACTTTCATTTAAATCCGTATCTTGATCAGATGTTTGA
AGAAGGCTTTTAACAACCTCATAGTCCTTTTGCAGTTCAGATAAAACATT
TTGAGGGATCTTATCACCGTCGAGCAACATTTTTATTAAATATTTATAAC
AGACTATAAACTTCCACAAATAGGTCAATGACTGTATCTAAAATGACGTC
TTCAAACCACAAATCCTCAAACTCATGGTCGTAATACTTTAGTACAGAGG
ATTGAAATGTCCTCAAAGCGATATTTAACTCTTTTCTACCCTTTCTATCC
AGAAACGAACGAACCAAGTGGTACTGCTCCAATGATAGATCTGAAAAAAA
AAACAAAAAAAACAATCAGAAATTGTTCAATTTAAGTATGTATGTTTTTT
AGGGACCTAAATGAATTAAACTGATTTTTGATTCAATAGATATAGAATTA
ACTTCTTTGGGCAGTGATCCGAGAAGGAGAGATTTATTAGATCTAGAGGG
GCAGCAATATTGGATAAAATTAATTCCACTCTCTTGAGACCAATATCCTC
TCAATTCCTCGGCAAATGTTTCGTTCACAAACGAAACAAATTCCTCATGA
AACAGAGGAATACGAAACAAGGGAATTTGAACATTTACAAAATGCCCTCC
TTTCGGATTCATCCAAAGCCTTAATAAACGCATTAGTTTTTGAACGTCAG
GTATAAAATGTAACGATCGAACACAAAGAATGATATCTAATGGATCCTTG
GGCCCAGACCATGTMAAAATATCTTGCCCATAAACAAAATGAAGCCGATC
TGAATAGAGGGACTCAGAGGATCCTAGTTTATTATTCAAATCAACCCCAG
TGATGTGAATATTCGGGAATCGATGATATAAACAACGGGTCAAATCACCG
TTCCCATGTCCAATTTCTAATACATTCAGGCGATCTTTATTATGA
back to top
Add to Basket