EMLSAG00000000595, EMLSAG00000000595-683361 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000595
Unique NameEMLSAG00000000595-683361
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592767542|gb|GAXK01187026.1| (TSA: Calanus finmarchicus comp6047220_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.350e-1
Identity = 16/51 (31.37%), Postives = 21/51 (41.18%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHG----TQRHHQSFNMRQSLFKNKYFIKKGHSQ 48
            CS W   +G P P     HG    T +  Q      S+  +   I +GHSQ
Sbjct:   81 CSSW*GTQGVPWPAEVECHGVTILTAKMLQDIAGIWSMLSHSMLISRGHSQ 233
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BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592917632|gb|GAXK01040743.1| (TSA: Calanus finmarchicus comp896572_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.043e+0
Identity = 16/43 (37.21%), Postives = 21/43 (48.84%), Query Frame = 0 
Query:    9 RGPPLPPTKHTHGTQRHHQSFNMRQS-------LFKNKYFIKK 44
            R  P   T    G  RH QS N R++       L KNKYF+++
Sbjct:  271 RTSPAISTPVPDGLARHQQSDNTRKANVSSRLELLKNKYFVEE 399
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BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768013|gb|GAXK01186555.1| (TSA: Calanus finmarchicus comp44980_c11_seq91 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.540e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  763 CSDGNCPTGEALPLTQSCHGECNHHPT 843
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768015|gb|GAXK01186553.1| (TSA: Calanus finmarchicus comp44980_c11_seq89 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.557e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  763 CSDGNCPTGEALPLTQSCHGECNHHPT 843
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768018|gb|GAXK01186550.1| (TSA: Calanus finmarchicus comp44980_c11_seq86 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.568e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  763 CSDGNCPTGEALPLTQSCHGECNHHPT 843
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768014|gb|GAXK01186554.1| (TSA: Calanus finmarchicus comp44980_c11_seq90 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.576e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  793 CSDANCPTGEALPLTQSCHGECNHHPT 873
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768017|gb|GAXK01186551.1| (TSA: Calanus finmarchicus comp44980_c11_seq87 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.589e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  793 CSDANCPTGEALPLTQSCHGECNHHPT 873
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768019|gb|GAXK01186549.1| (TSA: Calanus finmarchicus comp44980_c11_seq85 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.603e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct:  793 CSDANCPTGEALPLTQSCHGECNHHPT 873
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768021|gb|GAXK01186547.1| (TSA: Calanus finmarchicus comp44980_c11_seq83 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.667e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct: 1105 CSDANCPTGEALPLTQSCHGECNHHPT 1185
[Close]
BLAST of EMLSAG00000000595 vs. C. finmarchicus
Match: gi|592768022|gb|GAXK01186546.1| (TSA: Calanus finmarchicus comp44980_c11_seq82 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.674e+0
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:    2 CSDWNMLRGPPLPPTKHTHGTQRHHQS 28
            CSD N   G  LP T+  HG   HH +
Sbjct: 1105 CSDANCPTGEALPLTQSCHGECNHHPT 1185
[Close]
BLAST of EMLSAG00000000595 vs. L. salmonis peptides
Match: EMLSAP00000000595 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:350574:353421:1 gene:EMLSAG00000000595 transcript:EMLSAT00000000595 description:"snap_masked-LSalAtl2s109-processed-gene-3.11")

HSP 1 Score: 163.31 bits (412), Expect = 1.179e-53
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MCSDWNMLRGPPLPPTKHTHGTQRHHQSFNMRQSLFKNKYFIKKGHSQIFTIQVLRVFNPLYGSATITEPFIHALIM 77
            MCSDWNMLRGPPLPPTKHTHGTQRHHQSFNMRQSLFKNKYFIKKGHSQIFTIQVLRVFNPLYGSATITEPFIHALIM
Sbjct:    1 MCSDWNMLRGPPLPPTKHTHGTQRHHQSFNMRQSLFKNKYFIKKGHSQIFTIQVLRVFNPLYGSATITEPFIHALIM 77
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000595 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000595 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592767542|gb|GAXK01187026.1|5.350e-131.37TSA: Calanus finmarchicus comp6047220_c0_seq1 tran... [more]
gi|592917632|gb|GAXK01040743.1|2.043e+037.21TSA: Calanus finmarchicus comp896572_c0_seq1 trans... [more]
gi|592768013|gb|GAXK01186555.1|2.540e+044.44TSA: Calanus finmarchicus comp44980_c11_seq91 tran... [more]
gi|592768015|gb|GAXK01186553.1|2.557e+044.44TSA: Calanus finmarchicus comp44980_c11_seq89 tran... [more]
gi|592768018|gb|GAXK01186550.1|2.568e+044.44TSA: Calanus finmarchicus comp44980_c11_seq86 tran... [more]
gi|592768014|gb|GAXK01186554.1|2.576e+044.44TSA: Calanus finmarchicus comp44980_c11_seq90 tran... [more]
gi|592768017|gb|GAXK01186551.1|2.589e+044.44TSA: Calanus finmarchicus comp44980_c11_seq87 tran... [more]
gi|592768019|gb|GAXK01186549.1|2.603e+044.44TSA: Calanus finmarchicus comp44980_c11_seq85 tran... [more]
gi|592768021|gb|GAXK01186547.1|2.667e+044.44TSA: Calanus finmarchicus comp44980_c11_seq83 tran... [more]
gi|592768022|gb|GAXK01186546.1|2.674e+044.44TSA: Calanus finmarchicus comp44980_c11_seq82 tran... [more]

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BLAST of EMLSAG00000000595 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005951.179e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:35057... [more]
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BLAST of EMLSAG00000000595 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000595 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000595 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000595 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:350574..353421 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s109-processed-gene-3.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000595 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000595EMLSAT00000000595-696442Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:350574..353421+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000595-683361 ID=EMLSAG00000000595-683361|Name=EMLSAG00000000595|organism=Lepeophtheirus salmonis|type=gene|length=2848bp|location=Sequence derived from alignment at LSalAtl2s109:350574..353421+ (Lepeophtheirus salmonis)
GCTTTTAGCAGAGAGTGCATTGAAATACTTATGAAGTATTTCGTGACTTC
ATGACGTGTTTCATATTTTAAGTTTTTGGTCATTTATAATAACAATTTTG
ATAAATAAAATGTGTTCAGATTGGAATATGCTTCGTGGTCCACCCTTACC
TCCGACCAAGCATACTCATGGCACACAAAGGCATCATCAAAGCTTCAATA
TGAGGTAAGAGCAAGAGTATTAGCCCTATTCATTCCCTTCTAACAATATC
ATGTCCGGAATACCTCATCAGTCCGGGTTTCACTTTATGTAGTATACATT
TTTCATGTCAAGACCCTTTCCATTATGAAATCCACCATTAAATTGTCAGT
CATTCAACAGTCCAAATTTGAATATCTAAATATCCCGTAAAACAAATATC
CGGATAGTTTGGAGAGTTGCTCTTTAAGTTAGCTTAACTCCTCTTCATTT
TTAATCAATTTACACACACCTTATATTTTGAGCAAAAGAGGCCCTAAAAT
ACACACTGCTGTGACTAAATCCAACACAAGTGGCTCCAAACACCACATCA
AATAACGACGATTTTGAAAATCAAATTAAATTAATATGTCAAAGTGTTGA
AATCACCATGAAAGTTAAAAAATAAATTTGTACAATATTGTACATACAAA
GAACCAAAAGTTGCCCTAAGGGTCCTCCATTAAATCTAAGATGAATGAAT
TAAAAAACAATGTTAGATTTTTTTTTTTGCAACGAATTTGTAAATCAAAC
TATCAACTATGTCAAAGTGCTGAAATCACTATGAAAATTATTTATTAAAT
ATGTATAATATTGTACTTAACAAGAAGCAAAAGGGGACTATCAGGACCCT
CTATTAAATCCCCATTAATGACACCCAAATACCGCATATGAGATTTTCCC
TGCAACAAATTTGAAAAGCAATTAATAATATGTCAAGGCGTTGAAGTCAC
CATGAAAATACTTTATTGGATATGAACAATATACATACTCAGATACAAAA
TGGCCTCAAAGAGCCCTTTATCAAGTCCCGCACAAATGGCTCCAAACGCC
ACATCAAATAATTTTTTTCTTACAAAAAATTGTAAAAACTAATTAAAAAC
ATATTCAGGCGTTAAAATCACTATAAAAATTACTTATTAAATATGTACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGGATATGAACAATATACATACTCAGATACAAAATGGCCTCAAAGA
GCCCTTTATCAAGTCCCGCACAAATGGCTCCAAACGCCACATCAAATAAT
TTTTTTTCTTACAAAAAATTGTAAAAACTAATTAAAAACATATTCAGGCG
TTAAAATCACTATAAAAATTACTTATTAAATATGTACAATATACATACAC
AATTAAGAAATAAAAGGGCCCCAAAGGGTCCTCTATTAATCCCCACACAA
ATAAAAGGCCACATCAGGTAACTTCCCAGCAACAAATTAAAAAAACAAAA
AACAATTAATAATATGTCCAGGCGTTGAAGTCACCAATGAAAGTACTTAT
CAAATATGTAAAATATACACATTTAAGAATCAAAAGGGGTCCAGAAGATT
TTTTTAGATGCCTGCTTAAAAAATAGTAATTTAATTGGCCAGGGAGGGCT
GTCCGAAGGGTGTGAAGGGTATGAAAGTCTCCTCCTACCCTCAAATGAAT
ATTTTAGTCGGAGAAAATGAATGATGGGATGAAAAATTGGATATATGATG
TTTTGGTAATCTCAAAATAATTTTCTTCTATTAAAAGGTCATCTTAAAAG
AAAAGGCCTGAGTCATTCATTTATTTGCGTTCATTACATTATCATTAGAG
AATAAAATGTCAAAGGTTTGAAATGGCCATGAAAAATACTTTTTTATAAA
ACCTAGTAAGAAAAGTAGAAACTACAAAAAAGGCATACGAATAGAAATTC
TGATCCCTTAACTTAACCCTCCCCTCCTTGCTCCCGCTTCCTGGCCCAAA
AATGGAGTTCGGATGTGATATAAATTTAATCAACCAATTATTGATAAGCA
ATGAGCTACTGAGACAGGGCCGTTGGCANCGGAAGGATATATTTAAGGCA
GGAAAAATGGGATGTCAGTTGGAAAATTTGATACTTTAAAATGGTTTTGT
TGTCAAAAAAATAGTTTATTTCAATAATGGAAATTTTTTTAGTTTATAAG
AAAAAGTTGATGGCATTTTTTTTAACATGAGTCAAAAGAGTTTTCAATCC
CCTCCCCCCCCCCCCCCCCAAGAAAAAAAACCTCTATTGATGGCCTTGCG
GCCAAAACTGACCCATTAATTCATTTGCATGCATTACGCTACCAGAAAAT
GTATAAATCAAATTTTTAAAAAAATATGTCAAAGCGTTGAAATCACCATG
AAAATGACATAAATACATAACGCAGTAAGGAAATTAGAAACTACAAAAGG
TACTTGGATACAAATCCCGATTCTATTTAATTGAATTTCATAAAACATTG
GATCGTCTAYGCAGGMCGMTACCKCGGGYAGGGGGGATATTTCAGCCGTC
AAAAATGGGATTTAATGGTTGAAATATATTGGTTATCGATAAATAAGTAT
TTTCTATAGACAAAGTTTATTCAAAAATAAGTATTTTATCAAAAAAGGTC
ATTCACAAATATTCACAATACAAGTTCTAAGAGTGTTTAACCCCCTCTAC
GGCTCTGCGACCATCACTGAGCCATTCATTCATGCACTCATTATGTAA
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