EMLSAG00000000612, EMLSAG00000000612-683378 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000612
Unique NameEMLSAG00000000612-683378
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592871253|gb|GAXK01086309.1| (TSA: Calanus finmarchicus comp5218110_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 6.689e-1
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 0 
Query:    7 CLPPGLMCISNVDCCSDKC 25
            C+PPGL C  +V   SDKC
Sbjct:  166 CMPPGLECYKSVQKTSDKC 222
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592928048|gb|GAXK01030439.1| (TSA: Calanus finmarchicus comp1889913_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.148e-1
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 0 
Query:    1 MDRQDDCLPPGLMCISNVDCCSDKCSNSG---TSRPLGLCCIPS 41
            MD    CL  G  C S+ +CC++ CS+     T+   G C +P+
Sbjct:   78 MDHSPSCLADGEFCFSDGECCAEFCSHHWPPTTTPVFGECGLPA 209
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592852987|gb|GAXK01104557.1| (TSA: Calanus finmarchicus comp2360927_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.598e-1
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 0 
Query:    7 CLPPGLMCISNVDCCSDKC 25
            C+PPGL C   V+  S+KC
Sbjct:  398 CMPPGLECYKTVEKYSEKC 454
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592894022|gb|GAXK01064353.1| (TSA: Calanus finmarchicus comp6667602_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 1.652e+0
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 0 
Query:    7 CLPPGLMCISNVDCCSDKC 25
            C+PPGL C  +V+  S+KC
Sbjct:   81 CMPPGLECYKSVETYSEKC 137
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592837769|gb|GAXK01119775.1| (TSA: Calanus finmarchicus comp653375_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.533e+0
Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:    3 RQDDCLPPGLMCISNVDCC----SDKCSNSGTSRPLGLCCIPS 41
            R  +  PPGL     V CC    +   S SG++RP  +C +PS
Sbjct:  195 RHTELTPPGLAATGPVPCCQVLRTPSPSYSGSARP--MCGVPS 317
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Match: gi|592862869|gb|GAXK01094693.1| (TSA: Calanus finmarchicus comp49326_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.727e+0
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 0 
Query:    3 RQDDCLPPGL--MCISNVDCCSDKCSNSGTSRPL 34
            R D CL   L   C+S++ CC+  CS S  SRPL
Sbjct:  379 RLDVCLLVTLATYCVSSLFCCAAICS-SAVSRPL 477
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BLAST of EMLSAG00000000612 vs. L. salmonis peptides
Match: EMLSAP00000000612 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:505658:505985:-1 gene:EMLSAG00000000612 transcript:EMLSAT00000000612 description:"maker-LSalAtl2s109-augustus-gene-5.12")

HSP 1 Score: 126.716 bits (317), Expect = 1.372e-39
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MDRQDDCLPPGLMCISNVDCCSDKCSNSGTSRPLGLCCIPSGQKCLNSSNKKCCSKSCNASTKTCD 66
            MDRQDDCLPPGLMCISNVDCCSDKCSNSGTSRPLGLCCIPSGQKCLNSSNKKCCSKSCNASTKTCD
Sbjct:    1 MDRQDDCLPPGLMCISNVDCCSDKCSNSGTSRPLGLCCIPSGQKCLNSSNKKCCSKSCNASTKTCD 66
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000612 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000612 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592871253|gb|GAXK01086309.1|6.689e-157.89TSA: Calanus finmarchicus comp5218110_c0_seq1 tran... [more]
gi|592928048|gb|GAXK01030439.1|9.148e-134.09TSA: Calanus finmarchicus comp1889913_c0_seq1 tran... [more]
gi|592852987|gb|GAXK01104557.1|9.598e-152.63TSA: Calanus finmarchicus comp2360927_c0_seq1 tran... [more]
gi|592894022|gb|GAXK01064353.1|1.652e+052.63TSA: Calanus finmarchicus comp6667602_c0_seq1 tran... [more]
gi|592837769|gb|GAXK01119775.1|4.533e+037.21TSA: Calanus finmarchicus comp653375_c0_seq1 trans... [more]
gi|592862869|gb|GAXK01094693.1|8.727e+047.06TSA: Calanus finmarchicus comp49326_c0_seq6 transc... [more]
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BLAST of EMLSAG00000000612 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006121.372e-39100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:50565... [more]
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BLAST of EMLSAG00000000612 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000612 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000612 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000612 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:505658..505985 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s109-augustus-gene-5.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000612 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000612EMLSAT00000000612-696459Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:505658..505985-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000612-683378 ID=EMLSAG00000000612-683378|Name=EMLSAG00000000612|organism=Lepeophtheirus salmonis|type=gene|length=328bp|location=Sequence derived from alignment at LSalAtl2s109:505658..505985- (Lepeophtheirus salmonis)
ATGGACAGACAAGATGATTGCTTACCCCCTGGTCTCATGGTATTATTTTA
CCTTGACANTTTTTAAAAAATTATTTATGTATTTTACATAGTGTATATCA
AATGTGGATTGTTGTTCGGACAAATGTAGCAACTCTGGGACATCCAGACC
CCTTGGATTATGCTGTATTCCCTCTGGACAAAAGGTAAGGGACTCCCACT
TGACTCCACCTTCGCTTTTGTTAATTGGCATAATTTATCTATTATATTTT
ATATTTTAGTGCTTAAACTCGAGTAACAAAAAGTGTTGCAGTAAATCTTG
CAATGCCTCTACAAAAACTTGTGATTAG
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