EMLSAG00000000637, EMLSAG00000000637-683403 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000637
Unique NameEMLSAG00000000637-683403
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:NSUN4 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA] Pfam:PF01189 GO:GO:0005762 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341 OrthoDB:EOG789CB3 TreeFam:TF321304 CTD:387338 OMA:ACSPNLR EMBL:CU694667 RefSeq:XP_003128070.1 UniGene:Ssc.37517 Ensembl:ENSSSCT00000004317 GeneID:100524686 KEGG:ssc:100524686 Uniprot:F1S3W1)

HSP 1 Score: 46.2098 bits (108), Expect = 8.939e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIK 58
            + LL  KPGG+VVYSTCSLS  QN+ VV  +++ L      ++S+ VQ++
Sbjct:  293 AGLLATKPGGHVVYSTCSLSHLQNEYVVQGTIELLAN----QYSIEVQVE 338          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0008168 "methyltransferase activity" evidence=IEA] Pfam:PF01189 GO:GO:0003723 GO:GO:0008168 GO:GO:0005762 GO:GO:0006364 eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 PROSITE:PS51686 GeneTree:ENSGT00660000095341 HOGENOM:HOG000017426 HOVERGEN:HBG106892 OrthoDB:EOG789CB3 TreeFam:TF321304 EMBL:BT026151 EMBL:DY454541 RefSeq:NP_001178310.1 UniGene:Bt.36843 ProteinModelPortal:Q0V8R7 STRING:9913.ENSBTAP00000021120 PRIDE:Q0V8R7 Ensembl:ENSBTAT00000021120 GeneID:618779 KEGG:bta:618779 CTD:387338 InParanoid:Q0V8R7 OMA:ACSPNLR NextBio:20901346 Uniprot:Q0V8R7)

HSP 1 Score: 45.8246 bits (107), Expect = 1.164e-5
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIK 58
            + LL  KPGG++VYSTCSLS  QN+ VV  ++ EL ++   ++S+ VQ++
Sbjct:  294 AGLLATKPGGHIVYSTCSLSHLQNEYVVQGAI-ELLDN---QYSIKVQVE 339          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0008168 "methyltransferase activity" evidence=IEA] Pfam:PF01189 EMBL:CH471059 GO:GO:0003723 GO:GO:0008168 GO:GO:0005762 GO:GO:0006364 EMBL:AL122001 PDB:4FP9 PDB:4FZV PDBsum:4FP9 PDBsum:4FZV eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 PROSITE:PS51686 HOGENOM:HOG000017426 HOVERGEN:HBG106892 OrthoDB:EOG789CB3 TreeFam:TF321304 CTD:387338 OMA:ACSPNLR EMBL:AK021577 EMBL:AK057420 EMBL:AK291741 EMBL:AK295003 EMBL:BC014441 EMBL:BC016907 RefSeq:NP_001243056.1 RefSeq:NP_001243057.1 RefSeq:NP_950245.2 UniGene:Hs.163424 ProteinModelPortal:Q96CB9 SMR:Q96CB9 BioGrid:132288 DIP:DIP-58104N IntAct:Q96CB9 MINT:MINT-1474456 STRING:9606.ENSP00000419740 PhosphoSite:Q96CB9 DMDM:152125805 PaxDb:Q96CB9 PRIDE:Q96CB9 Ensembl:ENST00000474844 Ensembl:ENST00000536062 Ensembl:ENST00000537428 GeneID:387338 KEGG:hsa:387338 UCSC:uc001cpr.2 GeneCards:GC01P046805 HGNC:HGNC:31802 HPA:HPA027958 HPA:HPA028489 MIM:615394 neXtProt:NX_Q96CB9 PharmGKB:PA134953046 InParanoid:Q96CB9 PhylomeDB:Q96CB9 GenomeRNAi:387338 NextBio:101304 PRO:PR:Q96CB9 ArrayExpress:Q96CB9 Bgee:Q96CB9 CleanEx:HS_NSUN4 Genevestigator:Q96CB9 Uniprot:Q96CB9)

HSP 1 Score: 45.8246 bits (107), Expect = 1.220e-5
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIK 58
            + LL  KPGG+VVYSTCSLS  QN+ VV  +++ L      ++S+ VQ++
Sbjct:  294 AGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLAN----QYSIQVQVE 339          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:NSUN4 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0005762 "mitochondrial large ribosomal subunit" evidence=IEA] Pfam:PF01189 GO:GO:0005762 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341 OrthoDB:EOG789CB3 TreeFam:TF321304 OMA:ACSPNLR EMBL:AAEX03009775 Ensembl:ENSCAFT00000047805 Uniprot:J9P4A4)

HSP 1 Score: 45.4394 bits (106), Expect = 1.724e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIK 58
            + LL  KPGG++VYSTCSLS  QN+ VV  +++ L      ++S+ VQ++
Sbjct:  294 AGLLATKPGGHIVYSTCSLSHLQNEYVVQGTIEFLAN----QYSIKVQVE 339          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:orf19.518 species:5476 "Candida albicans" [GO:0016428 "tRNA (cytosine-5-)-methyltransferase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030488 "tRNA methylation" evidence=IEA] InterPro:IPR018314 InterPro:IPR023270 PRINTS:PR02011 PROSITE:PS01153 PROSITE:PS51606 Pfam:PF01189 GO:GO:0003723 EMBL:AACQ01000054 GO:GO:0030488 KO:K15334 OrthoDB:EOG7T1RN4 GO:GO:0016428 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 RefSeq:XP_717471.1 ProteinModelPortal:Q5A6Y3 GeneID:3640854 KEGG:cal:CaO19.8149 CGD:CAL0066137 Uniprot:Q5A6Y3)

HSP 1 Score: 43.8986 bits (102), Expect = 7.307e-5
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLN 63
             L  +K GG +VYSTCSLSP +N+ +V ++L++ W D         QI+L+N++
Sbjct:  344 GLQLLKKGGRLVYSTCSLSPIENEAIVASALRK-WGD---------QIRLVNVD 387          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:Nsun4 "NOP2/Sun domain family, member 4" species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO] [GO:0008150 "biological_process" evidence=ND] Pfam:PF01189 RGD:1559652 EMBL:CH474008 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341 OrthoDB:EOG789CB3 TreeFam:TF321304 CTD:387338 OMA:ACSPNLR EMBL:AABR06039526 EMBL:AABR06039500 RefSeq:NP_001100148.1 UniGene:Rn.49080 Ensembl:ENSRNOT00000016013 Ensembl:ENSRNOT00000016714 GeneID:298426 KEGG:rno:298426 UCSC:RGD:1559652 NextBio:643659 PRO:PR:D4A099 Uniprot:D4A099)

HSP 1 Score: 43.1282 bits (100), Expect = 9.323e-5
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQI-------KLINLNYCYI 67
            + LL  KPGG+VVYSTCSLS  QN+ VV  +++ L      ++++ VQ+       KL    +C++
Sbjct:  291 AGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLAN----QYNIKVQVEDLSHFRKLFMDTFCFL 352          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:Nsun4 "NOL1/NOP2/Sun domain family, member 4" species:10090 "Mus musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA] Pfam:PF01189 MGI:MGI:1919431 GO:GO:0003723 GO:GO:0008168 GO:GO:0005762 GO:GO:0006364 EMBL:AL627105 eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 PROSITE:PS51686 GeneTree:ENSGT00660000095341 HOGENOM:HOG000017426 HOVERGEN:HBG106892 OrthoDB:EOG789CB3 TreeFam:TF321304 CTD:387338 OMA:ACSPNLR EMBL:AK009285 EMBL:AK012994 EMBL:BC024628 RefSeq:NP_082418.1 UniGene:Mm.282560 ProteinModelPortal:Q9CZ57 SMR:Q9CZ57 STRING:10090.ENSMUSP00000030475 PhosphoSite:Q9CZ57 PaxDb:Q9CZ57 PRIDE:Q9CZ57 Ensembl:ENSMUST00000030474 Ensembl:ENSMUST00000030475 GeneID:72181 KEGG:mmu:72181 UCSC:uc008ufu.2 UCSC:uc012djh.1 InParanoid:Q9CZ57 NextBio:335641 PRO:PR:Q9CZ57 Bgee:Q9CZ57 CleanEx:MM_NSUN4 Genevestigator:Q9CZ57 Uniprot:Q9CZ57)

HSP 1 Score: 42.743 bits (99), Expect = 1.454e-4
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQI-------KLINLNYCYI 67
            + LL  KPGG+VVYSTCSLS  QN+ VV  +++ L      ++++ VQ+       KL    +C+ 
Sbjct:  291 AGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLAN----QYNIKVQVEDLSHFRKLFMDTFCFF 352          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:CPAR2_205180 species:5480 "Candida parapsilosis" [GO:0030488 "tRNA methylation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016428 "tRNA (cytosine-5-)-methyltransferase activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR018314 InterPro:IPR023270 PRINTS:PR02011 PROSITE:PS01153 PROSITE:PS51606 Pfam:PF01189 GO:GO:0003723 GO:GO:0030488 OrthoDB:EOG7T1RN4 GO:GO:0016428 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 EMBL:HE605206 Uniprot:G8BG91)

HSP 1 Score: 42.3578 bits (98), Expect = 2.066e-4
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLN 63
             L  +K GG +VYSTCSLSP +N+ VV  +L+E W D         +IKL++++
Sbjct:  292 GLQLLKKGGRLVYSTCSLSPIENEAVVAEALRE-WGD---------KIKLVDVS 335          
BLAST of EMLSAG00000000637 vs. GO
Match: - (symbol:nsun3 "NOP2/Sun domain family, member 3" species:7955 "Danio rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0016740 "transferase activity" evidence=IEA] [GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] Pfam:PF01189 ZFIN:ZDB-GENE-050706-95 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341 OMA:GYLHCNE OrthoDB:EOG789CB3 TreeFam:TF321304 EMBL:CR762462 EMBL:CU915566 Ensembl:ENSDART00000131664 PRO:PR:F6NJM6 ArrayExpress:F6NJM6 Bgee:F6NJM6 Uniprot:F6NJM6)

HSP 1 Score: 40.4318 bits (93), Expect = 7.759e-4
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASL 40
            SAL  V+PGG VVYSTC++S A+N  VV   L
Sbjct:  288 SALAAVRPGGIVVYSTCTMSRAENQSVVEEVL 319          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592776064|gb|GAXK01178504.1| (TSA: Calanus finmarchicus comp15396_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.279e-2
Identity = 18/48 (37.50%), Postives = 29/48 (60.42%), Query Frame = 0
Query:   17 GGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLNY 64
            GG +VYSTCS +P +++ V+   L+E  +  +L   V ++ KL  L Y
Sbjct: 1436 GGRMVYSTCSFNPIEDEAVLARILQETGDSVRL---VEIKDKLPGLKY 1570          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592773428|gb|GAXK01181140.1| (TSA: Calanus finmarchicus comp8848308_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.613e-1
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSL 27
            SA   VKPGG +VY+TCSL
Sbjct:  173 SAARLVKPGGRLVYATCSL 229          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592847115|gb|GAXK01110429.1| (TSA: Calanus finmarchicus comp221703_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.377e+0
Identity = 15/44 (34.09%), Postives = 24/44 (54.55%), Query Frame = 0
Query:    7 FRSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLE 50
            F +A+  +K GG +VYSTC+ +  +N+ +V       W    LE
Sbjct: 1073 FATAVKLLKVGGTLVYSTCTNNFDENENIVE------WAKESLE 1186          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592831154|gb|GAXK01126390.1| (TSA: Calanus finmarchicus comp47541_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.720e+0
Identity = 11/39 (28.21%), Postives = 19/39 (48.72%), Query Frame = 0
Query:   35 VVHASLKELWEDAQLEFSVWVQIKLINLNYCYILGYLNS 73
            V  A  K  W D  +    WV +++IN  +C ++   N+
Sbjct:   91 VASAG*KGAWRDTHMPLQRWVMVRVINTIHCSVVQLGNT 207          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592907664|gb|GAXK01050711.1| (TSA: Calanus finmarchicus comp1559333_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.146e+0
Identity = 17/50 (34.00%), Postives = 27/50 (54.00%), Query Frame = 0
Query:   29 PAQNDGVVHASLKELWEDAQLEFSVWVQIK-LINLNYC---YILGYLNSS 74
            PA    VVH S + L  D +L  ++W  ++  I +N C   Y+L + N+S
Sbjct:  192 PAGLVNVVHRSRRTLRPDFKLRETLWTMVQSFITMNVCQVTYVLEWPNTS 341          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592831152|gb|GAXK01126392.1| (TSA: Calanus finmarchicus comp47541_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.467e+0
Identity = 10/34 (29.41%), Postives = 17/34 (50.00%), Query Frame = 0
Query:   35 VVHASLKELWEDAQLEFSVWVQIKLINLNYCYIL 68
            V  A  K  W D  +    WV +++IN  +C ++
Sbjct:   71 VASAG*KGAWRDTHMPLQRWVMVRVINTIHCSVV 172          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592894867|gb|GAXK01063508.1| (TSA: Calanus finmarchicus comp1341757_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.107e+0
Identity = 11/42 (26.19%), Postives = 23/42 (54.76%), Query Frame = 0
Query:   43 LWEDAQ-LEFSVWVQIKLINLNYCYILGYLNSSQQLEYKVYQ 83
            +W+  + L+  VW+++K+ NL+ CY+   +       Y +Y 
Sbjct:  346 VWDQLR*LDRKVWIEMKVSNLD*CYLFSEIFQPMSHHYPIYH 471          
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Match: gi|592799081|gb|GAXK01155487.1| (TSA: Calanus finmarchicus comp105049_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.176e+0
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 0
Query:    1 MSTNHSFRSALLCVKPGGYVVYSTCSL 27
            +S NHS  SA LC+   G++V S C +
Sbjct:  257 LSNNHSLASATLCLCIRGFLVCSKCQV 337          
BLAST of EMLSAG00000000637 vs. L. salmonis peptides
Match: EMLSAP00000000637 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:658751:659155:-1 gene:EMLSAG00000000637 transcript:EMLSAT00000000637 description:"snap-LSalAtl2s109-processed-gene-6.37")

HSP 1 Score: 171.785 bits (434), Expect = 8.058e-57
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MSTNHSFRSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLNYCYILGYLNSSQQLEYKVYQ 83
            MSTNHSFRSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLNYCYILGYLNSSQQLEYKVYQ
Sbjct:    1 MSTNHSFRSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINLNYCYILGYLNSSQQLEYKVYQ 83          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: gb|EEC16154.1| (conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 65.855 bits (159), Expect = 6.582e-14
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   13 CVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            C+ PGG +VYSTCSLSP QNDGVVH +L++LWE   LEF+V
Sbjct:  151 CLLPGGSLVYSTCSLSPIQNDGVVHMALQQLWETTPLEFAV 191          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: gb|EFA08513.1| (5-methylcytosine rRNA methyltransferase NSUN4-like Protein [Tribolium castaneum])

HSP 1 Score: 65.0846 bits (157), Expect = 3.103e-13
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +AL  VK GG VVYSTCSLSP QNDGVVH +LK +WE+ ++E  V
Sbjct:  368 NALKLVKKGGVVVYSTCSLSPIQNDGVVHMTLKRIWEETKIEVVV 412          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: gb|KFM60440.1| (putative methyltransferase NSUN4, partial [Stegodyphus mimosarum])

HSP 1 Score: 52.7582 bits (125), Expect = 8.421e-10
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +AL  +K  G +VYSTCSLSP QNDGVVH +L +L  ++  EF V
Sbjct:   13 AALKALKLNGSLVYSTCSLSPLQNDGVVHMALSKLLSESTFEFIV 57          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: EEB16854.1 (conserved hypothetical protein [Pediculus humanus corporis])

HSP 1 Score: 54.299 bits (129), Expect = 2.371e-9
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    6 SFRSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +  +AL  VKPGG VVY+T ++SP QNDGVV A+++ + E++ + FSV
Sbjct:  417 TLANALKMVKPGGTVVYTTGTMSPVQNDGVVDAAIRMVMENSDMRFSV 464          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: XP_006568521.1 (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Apis mellifera])

HSP 1 Score: 52.7582 bits (125), Expect = 6.476e-9
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWED 46
            +AL  V  GG VVYSTCSLSP QNDGVV  +LK+ W++
Sbjct:  412 NALKLVSVGGTVVYSTCSLSPIQNDGVVQVALKKAWQE 449          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: gb|KPM11188.1| (methyltransferase sun-like protein [Sarcoptes scabiei])

HSP 1 Score: 52.7582 bits (125), Expect = 8.437e-9
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEF 51
            A+  V+ GG +VYSTCSLSP QNDGVVH ++K+L ++A +E+
Sbjct:  411 AMKSVRVGGTIVYSTCSLSPIQNDGVVHMAIKQL-QNAPVEY 451          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: EAL39544.3 (AGAP008523-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 51.6026 bits (122), Expect = 1.722e-8
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIKLINL 62
            + L  ++PGG +VYSTCSLSP QNDGVVH +L  ++     E  + V IK ++L
Sbjct:  419 NCLKLLRPGGTLVYSTCSLSPVQNDGVVHMALSNVFS----EIGMTVTIKDLSL 468          
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Match: AAF51412.1 (lethal (2) 10685 [Drosophila melanogaster])

HSP 1 Score: 51.2174 bits (121), Expect = 2.750e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSVWVQIK 58
            + L  ++PGG +VYSTCSLSP QNDGVVH +L++++     E+ +   IK
Sbjct:  411 NCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFT----EYGITTTIK 456          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1069804266|ref|XP_018326441.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Agrilus planipennis])

HSP 1 Score: 69.3218 bits (168), Expect = 4.730e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            SAL  VK GG VVYSTCSLSP QNDGVV+ +L+ELWED+ +EF V
Sbjct:  389 SALKMVKKGGIVVYSTCSLSPVQNDGVVYMALQELWEDSNMEFVV 433          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1058074924|gb|JAS41123.1| (hypothetical protein g.6231, partial [Cuerna arida])

HSP 1 Score: 63.929 bits (154), Expect = 2.192e-11
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            AL  VKPGG VVYSTC LSP QNDGVVH +LK++WE+   + +V
Sbjct:   59 ALKLVKPGGSVVYSTCCLSPVQNDGVVHMALKKIWEETDYKITV 102          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|241688807|ref|XP_002412858.1| (conserved hypothetical protein [Ixodes scapularis] >gi|215506660|gb|EEC16154.1| conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 65.855 bits (159), Expect = 3.220e-11
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   13 CVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            C+ PGG +VYSTCSLSP QNDGVVH +L++LWE   LEF+V
Sbjct:  151 CLLPGGSLVYSTCSLSPIQNDGVVHMALQQLWETTPLEFAV 191          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|939265402|ref|XP_014252746.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Cimex lectularius])

HSP 1 Score: 65.855 bits (159), Expect = 7.495e-11
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            SAL  VK GG VVYSTCSLSP QNDGVVH +LK++WED   + +V
Sbjct:  394 SALKLVKKGGTVVYSTCSLSPIQNDGVVHMALKKIWEDTDYKIAV 438          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1080055510|ref|XP_018569452.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Anoplophora glabripennis])

HSP 1 Score: 65.4698 bits (158), Expect = 1.208e-10
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +AL  VK GG VVYSTCSLSP QNDGVVH +LK++WE+  +E  V
Sbjct:  390 NALKLVKKGGIVVYSTCSLSPIQNDGVVHMALKQIWEETNMEIVV 434          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|91088013|ref|XP_974000.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Tribolium castaneum] >gi|270012065|gb|EFA08513.1| 5-methylcytosine rRNA methyltransferase NSUN4-like Protein [Tribolium castaneum])

HSP 1 Score: 65.0846 bits (157), Expect = 1.518e-10
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +AL  VK GG VVYSTCSLSP QNDGVVH +LK +WE+ ++E  V
Sbjct:  368 NALKLVKKGGVVVYSTCSLSPIQNDGVVHMTLKRIWEETKIEVVV 412          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|952511999|gb|KRT78803.1| (hypothetical protein AMK59_7427 [Oryctes borbonicus])

HSP 1 Score: 64.3142 bits (155), Expect = 2.836e-10
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            AL  VK GG VVYSTCSLSP QNDGVVH +LK +WE+  +E SV
Sbjct:  260 ALRLVKVGGNVVYSTCSLSPIQNDGVVHLALKRIWEETDIEVSV 303          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1101398166|ref|XP_018910070.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Bemisia tabaci] >gi|1101398168|ref|XP_018910071.1| PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Bemisia tabaci] >gi|1101398170|ref|XP_018910072.1| PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Bemisia tabaci] >gi|1101398172|ref|XP_018910073.1| PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Bemisia tabaci] >gi|1101398174|ref|XP_018910074.1| PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Bemisia tabaci])

HSP 1 Score: 63.929 bits (154), Expect = 4.625e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    9 SALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            +AL  V  GG VVYSTC+LSP QNDGVVH +LK++WE+ +L+F +
Sbjct:  427 NALKLVTVGGTVVYSTCTLSPIQNDGVVHMALKKIWEETELQFVI 471          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1041546380|ref|XP_017301967.1| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4-like [Diaphorina citri])

HSP 1 Score: 63.5438 bits (153), Expect = 6.506e-10
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    8 RSALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            R AL  VK GG VVYSTCSLSP QNDGVVH SLK +WE+   E  +
Sbjct:  426 RHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 471          

HSP 2 Score: 61.6178 bits (148), Expect = 3.069e-9
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            AL  VK GG VVYSTCSLSP QNDGVVH SLK +WE+   E  +
Sbjct:  376 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 419          
BLAST of EMLSAG00000000637 vs. nr
Match: gi|1041548718|ref|XP_008480389.2| (PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4-like isoform X1 [Diaphorina citri] >gi|1041548720|ref|XP_017302832.1| PREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4-like isoform X2 [Diaphorina citri])

HSP 1 Score: 62.003 bits (149), Expect = 7.548e-10
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   10 ALLCVKPGGYVVYSTCSLSPAQNDGVVHASLKELWEDAQLEFSV 53
            AL  VK GG VVYSTCSLSP QNDGVVH SLK +WE+   E  +
Sbjct:  113 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 156          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000637 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 9
Match NameE-valueIdentityDescription
-8.939e-646.00symbol:NSUN4 "Uncharacterized protein" species:982... [more]
-1.164e-546.00symbol:NSUN4 "5-methylcytosine rRNA methyltransfer... [more]
-1.220e-546.00symbol:NSUN4 "5-methylcytosine rRNA methyltransfer... [more]
-1.724e-544.00symbol:NSUN4 "Uncharacterized protein" species:961... [more]
-7.307e-540.74symbol:orf19.518 species:5476 "Candida albicans" [... [more]
-9.323e-537.88symbol:Nsun4 "NOP2/Sun domain family, member 4" sp... [more]
-1.454e-437.88symbol:Nsun4 "NOL1/NOP2/Sun domain family, member ... [more]
-2.066e-442.59symbol:CPAR2_205180 species:5480 "Candida parapsil... [more]
-7.759e-459.38symbol:nsun3 "NOP2/Sun domain family, member 3" sp... [more]
back to top
BLAST of EMLSAG00000000637 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 18
Match NameE-valueIdentityDescription
gi|592776064|gb|GAXK01178504.1|5.279e-237.50TSA: Calanus finmarchicus comp15396_c5_seq1 transc... [more]
gi|592773428|gb|GAXK01181140.1|1.613e-168.42TSA: Calanus finmarchicus comp8848308_c0_seq1 tran... [more]
gi|592847115|gb|GAXK01110429.1|2.377e+034.09TSA: Calanus finmarchicus comp221703_c0_seq1 trans... [more]
gi|592831154|gb|GAXK01126390.1|3.720e+028.21TSA: Calanus finmarchicus comp47541_c1_seq1 transc... [more]
gi|592907664|gb|GAXK01050711.1|4.146e+034.00TSA: Calanus finmarchicus comp1559333_c0_seq1 tran... [more]
gi|592831152|gb|GAXK01126392.1|4.467e+029.41TSA: Calanus finmarchicus comp47541_c1_seq3 transc... [more]
gi|592894867|gb|GAXK01063508.1|6.107e+026.19TSA: Calanus finmarchicus comp1341757_c0_seq1 tran... [more]
gi|592799081|gb|GAXK01155487.1|6.176e+044.44TSA: Calanus finmarchicus comp105049_c1_seq1 trans... [more]

Pages

back to top
BLAST of EMLSAG00000000637 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006378.058e-57100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:65875... [more]
back to top
BLAST of EMLSAG00000000637 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000637 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 8
Match NameE-valueIdentityDescription
gb|EEC16154.1|6.582e-1468.29conserved hypothetical protein [Ixodes scapularis][more]
gb|EFA08513.1|3.103e-1364.445-methylcytosine rRNA methyltransferase NSUN4-like... [more]
gb|KFM60440.1|8.421e-1055.56putative methyltransferase NSUN4, partial [Stegody... [more]
EEB16854.12.371e-950.00conserved hypothetical protein [Pediculus humanus ... [more]
XP_006568521.16.476e-963.16PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gb|KPM11188.1|8.437e-957.14methyltransferase sun-like protein [Sarcoptes scab... [more]
EAL39544.31.722e-848.15AGAP008523-PA [Anopheles gambiae str. PEST][more]
AAF51412.12.750e-848.00lethal (2) 10685 [Drosophila melanogaster][more]
back to top
BLAST of EMLSAG00000000637 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1069804266|ref|XP_018326441.1|4.730e-1271.11PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|1058074924|gb|JAS41123.1|2.192e-1163.64hypothetical protein g.6231, partial [Cuerna arida... [more]
gi|241688807|ref|XP_002412858.1|3.220e-1168.29conserved hypothetical protein [Ixodes scapularis]... [more]
gi|939265402|ref|XP_014252746.1|7.495e-1166.67PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|1080055510|ref|XP_018569452.1|1.208e-1064.44PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|91088013|ref|XP_974000.1|1.518e-1064.44PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|952511999|gb|KRT78803.1|2.836e-1068.18hypothetical protein AMK59_7427 [Oryctes borbonicu... [more]
gi|1101398166|ref|XP_018910070.1|4.625e-1060.00PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|1041546380|ref|XP_017301967.1|6.506e-1065.22PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]
gi|1041548718|ref|XP_008480389.2|7.548e-1065.91PREDICTED: 5-methylcytosine rRNA methyltransferase... [more]

Pages

back to top
BLAST of EMLSAG00000000637 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:658751..659155 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s109-processed-gene-6.37
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: 5-methylcytosine rRNA methyltransferase NSUN4 [Agrilus planipennis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000637 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000637EMLSAT00000000637-696484Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:658751..659155-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000637-683403 ID=EMLSAG00000000637-683403|Name=EMLSAG00000000637|organism=Lepeophtheirus salmonis|type=gene|length=405bp|location=Sequence derived from alignment at LSalAtl2s109:658751..659155- (Lepeophtheirus salmonis)
ATGTCCACTAATCATTCCTTTAGGTCAGCGCTCTTGTGTGTAAAACCTGG AGGATATGTTGTTTACTCTACGTGCTCACTATCTCCGGCCCAGAATGATG GAGTCGTTCACGCTTCTCTGAAAGAACTCTGGGAAGATGCACAATTGGAA TTCTCTGTCTGGTAATTTGAGAAATATATTTGACCCGTCAATACAAAATC AAACTAGAGGATGATTATTAATTTTTTGGAGTCTCCACTTATAGTAGCAA AAATTCATCGTTGCATTTAAAGAACTAGAAATAGATAGATATTTCTATTT AAAAATCCATATAGGGTCCAAATTAAGCTCATAAATCTAAACTATTGCTA CATTCTTGGTTATCTCAACTCATCTCAGCAATTAGAATACAAAGTCTACC AATGA
back to top
Add to Basket