EMLSAG00000000672, EMLSAG00000000672-683438 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000672
Unique NameEMLSAG00000000672-683438
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592943160|gb|GAXK01015393.1| (TSA: Calanus finmarchicus comp1915277_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.781e-5
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 0 
Query:   18 YSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLP 59
            + +  K  HPDYDSTT +ND+ ILT   +M       PVCLP
Sbjct:   29 FKVCSKIEHPDYDSTTSDNDLSILTLCSSMTYRKEVKPVCLP 154
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592922301|gb|GAXK01036088.1| (TSA: Calanus finmarchicus comp108889_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 3.467e-5
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 0 
Query:   17 LYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPAT 72
            ++ +  KA HPDYDS T+E+D  ILT    +       P+CLP  S   + D+ +T
Sbjct:  645 VFDVCSKAEHPDYDSNTNEHDFAILTLCKPITFRKTVSPICLPTQSGASYDDVLST 812
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592908982|gb|GAXK01049393.1| (TSA: Calanus finmarchicus comp1471540_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 9.575e-5
Identity = 25/73 (34.25%), Postives = 37/73 (50.68%), Query Frame = 0 
Query:    1 IKTGSVDSEAFSPRYILYSISDK-----AYHPDYDSTTHENDIVI--LTTVFNMGPNINSIPVCLPQVSTHDF 66
            ++ G  D+E   P    Y   D+     A HPDYDS +  ND+V+  LT      PNI  +P+C+P+    D+
Sbjct:  466 LRVGEYDTENNFPE--PYKFQDRYVEIVAVHPDYDSFSFANDLVLLRLTEPVRFQPNI--VPICIPEDDDDDY 672
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592931437|gb|GAXK01027116.1| (TSA: Calanus finmarchicus comp18562_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 1.165e-4
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   27 PDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPA 71
            PDYD+T+  NDI +L    ++  N N IP CLP   T  +TD  A
Sbjct:  488 PDYDTTSINNDIALLRLASDVEFNNNVIPACLPTDRTQQYTDYEA 622
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592931436|gb|GAXK01027117.1| (TSA: Calanus finmarchicus comp18562_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 1.381e-4
Identity = 20/45 (44.44%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   27 PDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPA 71
            PDYD+T+  NDI +L    ++  N N IP CLP   T  +TD  A
Sbjct:  472 PDYDTTSINNDIALLRLASDVEFNNNVIPACLPTDRTQQYTDYEA 606
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592922300|gb|GAXK01036089.1| (TSA: Calanus finmarchicus comp108889_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.437e-4
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 0 
Query:   17 LYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPAT 72
            ++ +  KA HPDYDS T+E+D  ILT    +       P+CLP  S   + D+ +T
Sbjct:  645 VFDVCSKAEHPDYDSNTNEHDFAILTLCKPITFRKTVSPICLPTQSGASYDDVLST 812
[Close]
BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592816175|gb|GAXK01138393.1| (TSA: Calanus finmarchicus comp102651_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 9.861e-4
Identity = 17/45 (37.78%), Postives = 24/45 (53.33%), Query Frame = 0 
Query:   18 YSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVS 62
            + I  K  HPDY+  T +NDI ++     +    + IPVCLP  S
Sbjct: 1212 FDIESKTVHPDYNPATFQNDIALIRLSKKVVYKEHIIPVCLPDAS 1346
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592949817|gb|GAXK01008736.1| (TSA: Calanus finmarchicus comp2504983_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 3.503e-3
Identity = 17/52 (32.69%), Postives = 27/52 (51.92%), Query Frame = 0 
Query:   18 YSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDM 69
            + +  K  HP+Y   T+E+D  ILT    +  + N  P+CLP  S   + D+
Sbjct:   11 FDVCSKEEHPNYKPDTNEHDFAILTLCKPLAFSKNVSPICLPGQSGDSYDDV 166
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592780298|gb|GAXK01174270.1| (TSA: Calanus finmarchicus comp231606_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 3.603e-3
Identity = 22/64 (34.38%), Postives = 29/64 (45.31%), Query Frame = 0 
Query:   12 SPRYILYSISDKAYHPDYDSTTHEN---DIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPAT 72
            + R I  ++     HP YD  TH N    +V L T  +     N  PVCLP+   +DF    AT
Sbjct:  602 TSRTIRTNVVQIVNHPKYDQGTHNNYDLSLVKLETKIDFTRTPNVRPVCLPKDDHNDFVGYKAT 793
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Match: gi|592801113|gb|GAXK01153455.1| (TSA: Calanus finmarchicus comp5336380_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 4.106e-3
Identity = 22/53 (41.51%), Postives = 30/53 (56.60%), Query Frame = 0 
Query:    8 SEAFSPRYILYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQ 60
            +E + PR +L  +S    H  YDS T +NDI +L     +  NI + PVCLPQ
Sbjct:  211 NEEYLPRRVL-RVSLILLHYYYDSVTMQNDIALLKLAEVVDMNIYT-PVCLPQ 363
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BLAST of EMLSAG00000000672 vs. L. salmonis peptides
Match: EMLSAP00000000672 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11073:836:1279:-1 gene:EMLSAG00000000672 transcript:EMLSAT00000000672 description:"snap_masked-LSalAtl2s11073-processed-gene-0.0")

HSP 1 Score: 153.68 bits (387), Expect = 6.649e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 IKTGSVDSEAFSPRYILYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPATCK 74
            IKTGSVDSEAFSPRYILYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPATCK
Sbjct:    1 IKTGSVDSEAFSPRYILYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPATCK 74
[Close]
BLAST of EMLSAG00000000672 vs. L. salmonis peptides
Match: EMLSAP00000009899 (pep:novel supercontig:LSalAtl2s:LSalAtl2s645:169207:181410:1 gene:EMLSAG00000009899 transcript:EMLSAT00000009899 description:"maker-LSalAtl2s645-snap-gene-1.9")

HSP 1 Score: 105.916 bits (263), Expect = 5.916e-29
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 0 
Query:    1 IKTGSVDSEAFSPRYILYSISDKAYHPDYDSTTHENDIVILTTVFNMGPNINSIPVCLPQ 60
            IKTGS+DSEAFS RYILYSISDK YHP YDSTTH+NDIVILT  FNM PNIN IPVCLPQ
Sbjct:  334 IKTGSLDSEAFSTRYILYSISDKEYHPYYDSTTHQNDIVILTAEFNMVPNINLIPVCLPQ 393
[Close]
BLAST of EMLSAG00000000672 vs. L. salmonis peptides
Match: EMLSAP00000002190 (pep:novel supercontig:LSalAtl2s:LSalAtl2s14046:94:441:1 gene:EMLSAG00000002190 transcript:EMLSAT00000002190 description:"maker-LSalAtl2s14046-snap-gene-0.3")

HSP 1 Score: 76.2554 bits (186), Expect = 1.648e-19
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   29 YDSTTHENDIVILTTVFNMGPNINSIPVCLPQVSTHDFTDMPAT 72
            YDSTTHENDIVILT  FN+ PNIN IPVCLPQVSTHDFT+M AT
Sbjct:    1 YDSTTHENDIVILTAEFNIVPNINLIPVCLPQVSTHDFTNMLAT 44
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000672 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000672 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592943160|gb|GAXK01015393.1|1.781e-547.62TSA: Calanus finmarchicus comp1915277_c0_seq1 tran... [more]
gi|592922301|gb|GAXK01036088.1|3.467e-537.50TSA: Calanus finmarchicus comp108889_c0_seq1 trans... [more]
gi|592908982|gb|GAXK01049393.1|9.575e-534.25TSA: Calanus finmarchicus comp1471540_c0_seq1 tran... [more]
gi|592931437|gb|GAXK01027116.1|1.165e-444.44TSA: Calanus finmarchicus comp18562_c1_seq1 transc... [more]
gi|592931436|gb|GAXK01027117.1|1.381e-444.44TSA: Calanus finmarchicus comp18562_c1_seq2 transc... [more]
gi|592922300|gb|GAXK01036089.1|1.437e-437.50TSA: Calanus finmarchicus comp108889_c0_seq2 trans... [more]
gi|592816175|gb|GAXK01138393.1|9.861e-437.78TSA: Calanus finmarchicus comp102651_c0_seq1 trans... [more]
gi|592949817|gb|GAXK01008736.1|3.503e-332.69TSA: Calanus finmarchicus comp2504983_c0_seq1 tran... [more]
gi|592780298|gb|GAXK01174270.1|3.603e-334.38TSA: Calanus finmarchicus comp231606_c1_seq1 trans... [more]
gi|592801113|gb|GAXK01153455.1|4.106e-341.51TSA: Calanus finmarchicus comp5336380_c0_seq1 tran... [more]

Pages

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BLAST of EMLSAG00000000672 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000006726.649e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11073:836... [more]
EMLSAP000000098995.916e-2985.00pep:novel supercontig:LSalAtl2s:LSalAtl2s645:16920... [more]
EMLSAP000000021901.648e-1984.09pep:novel supercontig:LSalAtl2s:LSalAtl2s14046:94:... [more]
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BLAST of EMLSAG00000000672 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000672 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000672 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000672 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11073supercontigLSalAtl2s11073:836..1279 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s11073-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000672 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000672EMLSAT00000000672-696519Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11073:836..1279-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000672-683438 ID=EMLSAG00000000672-683438|Name=EMLSAG00000000672|organism=Lepeophtheirus salmonis|type=gene|length=444bp|location=Sequence derived from alignment at LSalAtl2s11073:836..1279- (Lepeophtheirus salmonis)
ATTAAAACCGGAAGTGTGGACAGTGAAGCCTTCTCACCTCGATATATATT
GTATTCTATCAGCGATAAAGCATATCACCCAGACTACGACTCAACAACTC
ATGAAAATGACATTGTCATTTTAACCACAGTATTTAACATGGGGCCAAAT
ATAAATTCAATCCCTGTTTGTTTACCGCAAGTTAGTACTCACGACTTTAC
TGACATGCCTGCAACATGTAAGTAGATTATTTTMCATCCACTATCTCATT
ATCAAAAAGAGTTGACATTTACAGATACAGGAGTTGATATTCCGACTATT
TCAACGCAGACTAAATTAGGATTTCTTATCACAAGGATTGTAAATGACAA
CCAATGTCCCAATTCCAATTCGTTGTGTGCTAAAGCTATAGATACTTCGT
CGAATGGAAACTGGGGATCGCCGCTAGTTGCAAAAGTTGATGGA
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