EMLSAG00000000674, EMLSAG00000000674-683440 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000674
Unique NameEMLSAG00000000674-683440
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000674 vs. C. finmarchicus
Match: gi|592812275|gb|GAXK01142293.1| (TSA: Calanus finmarchicus comp101246_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.200e+0
Identity = 23/53 (43.40%), Postives = 28/53 (52.83%), Query Frame = 0 
Query:   28 PVCARPGLDLGVKSGSLLGSFGAAAYTGAISSCPTLIPHLTMVGGSGVLPALL 80
            P C RPG+D G  S   L S G AAY   +  CP     +++ GGS V PA L
Sbjct:  529 PACQRPGMDGGSSSEFQLHS-GLAAYVLGVPGCP-----VSLCGGS-VPPAGL 666
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BLAST of EMLSAG00000000674 vs. L. salmonis peptides
Match: EMLSAP00000000674 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1107:235021:236570:1 gene:EMLSAG00000000674 transcript:EMLSAT00000000674 description:"maker-LSalAtl2s1107-snap-gene-1.44")

HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0 
Query:    1 MNLSFKITFLISLLILHDSSAIIQHVLPVCARPGLDLGVKSGSLLGSFGAAAYTGAISSCPTLIPHLTMVGGSGVLPALLSGPFXPVATIITAGLVGGALGGTAGSLISCREVGLQNGTHALIQEANYEQEDYENQYLWNSPSDLDYDSIDTMKDETDLYRYDPTNLQNVDINDDPSRNNWLSHNGQRSNMLDNTLRRKISVHGNHGIDRMKRRKYESSMRKAEENRKYKIRRLDHFKRQPILLSKRRSQLSRKAISKLLKSKFRKRFELVKLKKGKDKKLYMKRRRKNPFRSGFKRRRNTQ 302
            MNLSFKITFLISLLILHDSSAIIQHVLPVCARPGLDLGVKSGSLLGSFGAAAYTGAISSCPTLIPHLTMVGGSGVLPALLSGPFXPVATIITAGLVGGALGGTAGSLISCREVGLQNGTHALIQEANYEQEDYENQYLWNSPSDLDYDSIDTMKDETDLYRYDPTNLQNVDINDDPSRNNWLSHNGQRSNMLDNTLRRKISVHGNHGIDRMKRRKYESSMRKAEENRKYKIRRLDHFKRQPILLSKRRSQLSRKAISKLLKSKFRKRFELVKLKKGKDKKLYMKRRRKNPFRSGFKRRRNTQ
Sbjct:    1 MNLSFKITFLISLLILHDSSAIIQHVLPVCARPGLDLGVKSGSLLGSFGAAAYTGAISSCPTLIPHLTMVGGSGVLPALLSGPFXPVATIITAGLVGGALGGTAGSLISCREVGLQNGTHALIQEANYEQEDYENQYLWNSPSDLDYDSIDTMKDETDLYRYDPTNLQNVDINDDPSRNNWLSHNGQRSNMLDNTLRRKISVHGNHGIDRMKRRKYESSMRKAEENRKYKIRRLDHFKRQPILLSKRRSQLSRKAISKLLKSKFRKRFELVKLKKGKDKKLYMKRRRKNPFRSGFKRRRNTQ 302
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BLAST of EMLSAG00000000674 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold25_size650667-snap-gene-5.32 (protein:Tk06714 transcript:maker-scaffold25_size650667-snap-gene-5.32-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 111.309 bits (277), Expect = 1.951e-27
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 0 
Query:    1 MNLSFKITFLISLLILHDSSAIIQHVLPVCARPGLDLGVKSGSLLGSFGAAAYTGAISSCPTLIPHLTMVGGSGVLPALL-SGPFXPVATIITAGLVGGA-LGGTAGSLISCREVGLQNGTHALIQEANYEQEDYENQY 137
            +N S +I  ++ + +LH S A+I H LP CARPG ++G KSG  LG  GAAAY+G +S+CP ++P +   G S  LP L+  GP  P+A ++  G+VGGA LGG  GS+ISCREVG+QN TH ++Q   Y+ E +   Y
Sbjct:  387 LNRSGQILVVLLVFVLHRSQALIDHALPECARPGFNVGFKSGGALGGIGAAAYSGLLSTCPGMLPAVVGSGASIALPGLMIGGPLAPMAAMLATGVVGGAMLGGATGSVISCREVGVQNDTHYMVQ---YKPEHHSTGY 522
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000674 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000674 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592812275|gb|GAXK01142293.1|2.200e+043.40TSA: Calanus finmarchicus comp101246_c3_seq1 trans... [more]
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BLAST of EMLSAG00000000674 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006740.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1107:2350... [more]
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BLAST of EMLSAG00000000674 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000674 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000674 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000674 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold25_size650667-snap-gene-5.321.951e-2747.48protein:Tk06714 transcript:maker-scaffold25_size65... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1107supercontigLSalAtl2s1107:235021..236570 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1107-snap-gene-1.44
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000674 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000674EMLSAT00000000674-696521Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1107:235021..236570+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000674-683440 ID=EMLSAG00000000674-683440|Name=EMLSAG00000000674|organism=Lepeophtheirus salmonis|type=gene|length=1550bp|location=Sequence derived from alignment at LSalAtl2s1107:235021..236570+ (Lepeophtheirus salmonis)
ATGAACCTTTCATTCAAGATTACATTCCTCATTTCGCTACTCATTCTTCA
TGACTCATCTGCTATCATACAGCATGTTCTCCCAGTGTGTGCACGTCCAG
GACTTGATTTAGGAGTGAAATCAGGATCATTACTTGGTAGTTTCGGTGCA
GCTGCTTATACTGGTGCAATATCATCTTGTCCTACTCTGATACCTCACTT
GACTATGGTTGGAGGYTCTGGAGTGCTTCCAGCACTCTTGTCAGGACCTT
TTGSTCCAGTTGCTACGATTATTACGGCTGGYCTGGTTGGAGGGGCATTA
GGAGGGACTGCTGGATCCTTAATTAGTTGCAGAGAAGTTGGACTTCAAAA
TGGAACTCATGCTTTAATACAAGAAGCAAATTACGAGCAGGAGGACTATG
AAAAGTGATTAATTTGTTTTTTATAATATATTTAAATCCCCTAAAAATTG
TTTTACATATATGATTTTAGTCAATATTTATGGAACAGTCCAAGTGATTT
GGATTATGATAGTATCGACACCATGAAAGATGAAACTGATTTGTATCGTT
ACGATCCAACTAATCTTCAAAATGTGGACATAAATGATGACCCTAGTCGA
AATAACTGGTTGTCCCATAATGGTCAACGATCAAATATGCTGGACAATAC
ACTCAGAAGAAAAATATCTGTCCATGGGAATCATGGAATTGATAGAATGA
AACGTCGTAAGTATGAAAGTTCCATGCGTAAAGCTGAAGAAAATAGGAAA
TACAAGATACGAAGGCTAGATCATTTTAAAAGACAACCCATTCTTTTAAG
TAAACGACGATCTCAATTGTCCAGGAAGGCCATTTCTAAATTACTCAAAT
CCAAGTTCAGAAAAAGGTTTGAACTTGTTAAATTGAAAAAAGGGAAAGAC
AAAAAATTATATATGAAGAGACGTCGGAAAAATCCATTTCGCTCAGGGTT
CAAAAGAAGAAGGTATTCTGGGAAATGAGCTATAACCCGTTATTAGACTC
TATTTTGAAGTTTATAATATATATGACTGTATTCTACAGGGACGTCTGCA
GGGGGTGAGCTGAAGGGGTGGTAGCCCTCCCCAAATTAAGTCATTTTTGA
CGTTTACTAGAAAATTTGATATTTGAAATTTAAAGAAAAATAATATCTAA
AAGATAATTTTTGAATTTTTTTTCCAAAAATTTTATTTTTTTGTTTGAAG
CTGTGGATATTAAAAGAAAATCCCAAAAATATAATATTTTAAACTGAATT
TTCGAAATTTTTTACACAAAAATTTAATTTTAAAATTTTTATCCAAAACA
TTTAATTTTTAAAATTTTCATCCAAAAATTTTTATTTTTCAGATATTTTT
ACAAAAAAACAAAAACAATGCACCACCCCCTCTAAAAATATATATATAAT
CCTGCGGACGCCCCTGTTCTATTATACCTACAACAATTCCTATTTCTCAA
GTTACCTCACTTGTTATTACCATGATGTTCATTAATTATTATTTCTTATC
ATATGTGACTTTTGCGTTTAATGTAATCTTACTATAGAAATACACAATAA
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