EMLSAG00000000693, EMLSAG00000000693-683459 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000693
Unique NameEMLSAG00000000693-683459
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, egg string deformation
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
P F120 UN28_g13803 female
  1. PreAdult2
  2. Adult
-Missing-
female reproduction, egg string deformation
07.03.2014 - 15:55
22.04.2014 - 00:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
Q F120 UN28_g13803 female
  1. PreAdult2
  2. Adult
Reduced survival
-Missing-
10.06.2014 - 13:35
02.07.2014 - 00:00
Homology
BLAST of EMLSAG00000000693 vs. C. finmarchicus
Match: gi|592923728|gb|GAXK01034687.1| (TSA: Calanus finmarchicus comp7364746_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.179e+0
Identity = 25/68 (36.76%), Postives = 35/68 (51.47%), Query Frame = 0
Query:  129 SNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIF-------HLVSLFEQVLSDSELSKDRLKLISQY 189
              K +S   VCA D + K    FQT   F  + +        HL+ LFEQ+L+D  L +DRL+L  +Y
Sbjct:  102 QQKCLSFFLVCA*DQLPKH---FQTVLLFLCLCMLNTSRIQLHLL-LFEQILTDLLLHEDRLRLAPKY 293          
BLAST of EMLSAG00000000693 vs. C. finmarchicus
Match: gi|592801864|gb|GAXK01152704.1| (TSA: Calanus finmarchicus comp3406715_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 4.545e+0
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 0
Query:  113 GDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFD 158
            G S   H+I  IK +L+N  V +  +     V+K  ELF+T   FD
Sbjct:  227 GRSDTKHVIKKIKDVLTNLQVFNVVIPNKPDVRKVIELFETEYMFD 364          
BLAST of EMLSAG00000000693 vs. L. salmonis peptides
Match: EMLSAP00000000693 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:423442:424167:-1 gene:EMLSAG00000000693 transcript:EMLSAT00000000693 description:"maker-LSalAtl2s110-augustus-gene-4.22")

HSP 1 Score: 442.195 bits (1136), Expect = 4.363e-159
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ 217
            NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ
Sbjct:    1 NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ 217          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000693 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000693 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592923728|gb|GAXK01034687.1|1.179e+036.76TSA: Calanus finmarchicus comp7364746_c0_seq1 tran... [more]
gi|592801864|gb|GAXK01152704.1|4.545e+036.96TSA: Calanus finmarchicus comp3406715_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000693 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006934.363e-159100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s110:42344... [more]
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BLAST of EMLSAG00000000693 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000693 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000693 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000693 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s110supercontigLSalAtl2s110:423442..424167 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s110-augustus-gene-4.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000693 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000693EMLSAT00000000693-696540Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s110:423442..424167-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000693-683459 ID=EMLSAG00000000693-683459|Name=EMLSAG00000000693|organism=Lepeophtheirus salmonis|type=gene|length=726bp|location=Sequence derived from alignment at LSalAtl2s110:423442..424167- (Lepeophtheirus salmonis)
AATTGTCCAGTTACCCCTGACGCAAACCAAACAACGTATGGAAGTGTATA TCCACACTTATCTTACCGGCATGATCTCACGTTTCGAGATCTTCAACTTG CTTCCTCTTTTCCTAATAATAGCAACCAATTTCTGAATGAAAGTAATATG GAAATTCTACACAATTCTCTTCTAGAATCTAAATGGAAACCCAAGGACAA AATATTTGTGGACCTCAACAATACACTTGATGAAAAAGATAATATCGACT ATAACTCAACTATTCTTGCGAACAATAATAATAACAACAGTAGTGTCCTT GAGCCCATGTTCCAGATATTCCGAGACATCAAATCAGGAGACTCGCATTT AAGCCACATCATTAGTAACATAAAGCGTAAGGAGATAAGACCGGGAAACG AATTTGCTACTAATAAATAATAAATATATATATTCTTGATCCATCCAGGA CTCCTCTCTAACAAAATGGTATCCCACTCCGATGTTTGTGCAGATGATTT TGTCAAAAAATCCGCGGAGTTATTTCAAACATCCACACAATTTGATGATA TTGCCATTTTCCACTTGGTATCCTTATTTGAACAGGTTTTAAGTGATTCT GAGTTGAGTAAGGATCGACTGAAACTCATTTCTCAATATTGTCGCTCCCC TCTGGCTAAGCTAGCCATGGCTGGAAATCCAGAGATTTCTAAAAGGGCGG AAAATTGTTTGAATCTACTGCAATGA
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