EMLSAG00000000697, EMLSAG00000000697-683463 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000697
Unique NameEMLSAG00000000697-683463
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000697 vs. C. finmarchicus
Match: gi|592823506|gb|GAXK01131062.1| (TSA: Calanus finmarchicus comp3506014_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.223e+0
Identity = 20/57 (35.09%), Postives = 33/57 (57.89%), Query Frame = 0 
Query:   49 DLLIPSQSNKKNPDIKPFILKLVKMIKAVNECIPCLCK-------AVNRKRGISFEG 98
             LL+ SQS++K PDI PF+L +  ++K +   +PC+ K       AV R + ++F  
Sbjct:  175 SLLVNSQSSQK-PDI-PFVLSVFVVMKRLLVMLPCVVKKLLKFLNAVLRLKSMNFNA 339
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BLAST of EMLSAG00000000697 vs. C. finmarchicus
Match: gi|592838652|gb|GAXK01118892.1| (TSA: Calanus finmarchicus comp192084_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 6.214e+0
Identity = 21/61 (34.43%), Postives = 32/61 (52.46%), Query Frame = 0 
Query:   20 CIDTEVKKQFDSESEYWAESCGDCQKKVTDLLIPSQSNKKNPDIKPFILKLVKMIKAVNEC 80
            CI    K +FD   E   +SC +C + V D +IPS++  +NP  K   ++  KM  A  +C
Sbjct:  578 CISKWRKAKFD---EDIRKSCPEC-RVVQDFVIPSKNWVENPTSKAEFVERFKMNAAKKDC 748
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BLAST of EMLSAG00000000697 vs. C. finmarchicus
Match: gi|592838653|gb|GAXK01118891.1| (TSA: Calanus finmarchicus comp192084_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 9.699e+0
Identity = 21/61 (34.43%), Postives = 32/61 (52.46%), Query Frame = 0 
Query:   20 CIDTEVKKQFDSESEYWAESCGDCQKKVTDLLIPSQSNKKNPDIKPFILKLVKMIKAVNEC 80
            CI    K +FD   E   +SC +C + V D +IPS++  +NP  K   ++  KM  A  +C
Sbjct:  578 CISKWRKAKFD---EDIRKSCPEC-RVVQDFVIPSKNWVENPTSKAEFVERFKMNAAKKDC 748
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BLAST of EMLSAG00000000697 vs. L. salmonis peptides
Match: EMLSAP00000000697 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:443333:446119:1 gene:EMLSAG00000000697 transcript:EMLSAT00000000697 description:"maker-LSalAtl2s110-snap-gene-4.25")

HSP 1 Score: 216.083 bits (549), Expect = 1.355e-73
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MKSHQKAMLAYVTRSADAGCIDTEVKKQFDSESEYWAESCGDCQKKVTDLLIPSQSNKKNPDIKPFILKLVKMIKAVNECIPCLCKAVNRKRGISFEGCESFGF 104
            MKSHQKAMLAYVTRSADAGCIDTEVKKQFDSESEYWAESCGDCQKKVTDLLIPSQSNKKNPDIKPFILKLVKMIKAVNECIPCLCKAVNRKRGISFEGCESFGF
Sbjct:    1 MKSHQKAMLAYVTRSADAGCIDTEVKKQFDSESEYWAESCGDCQKKVTDLLIPSQSNKKNPDIKPFILKLVKMIKAVNECIPCLCKAVNRKRGISFEGCESFGF 104
[Close]
BLAST of EMLSAG00000000697 vs. L. salmonis peptides
Match: EMLSAP00000001716 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1297:29284:29876:-1 gene:EMLSAG00000001716 transcript:EMLSAT00000001716 description:"snap_masked-LSalAtl2s1297-processed-gene-0.3")

HSP 1 Score: 70.4774 bits (171), Expect = 1.168e-16
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:    2 KSHQKAMLAYVTRSADAGCIDTEVKKQFDSESEYWAE 38
            KSH+KAM+AYVTR ADAGCIDTEVKKQFDSE EYW+E
Sbjct:   63 KSHKKAMVAYVTRCADAGCIDTEVKKQFDSECEYWSE 99
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000697 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000697 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592823506|gb|GAXK01131062.1|1.223e+035.09TSA: Calanus finmarchicus comp3506014_c0_seq1 tran... [more]
gi|592838652|gb|GAXK01118892.1|6.214e+034.43TSA: Calanus finmarchicus comp192084_c0_seq2 trans... [more]
gi|592838653|gb|GAXK01118891.1|9.699e+034.43TSA: Calanus finmarchicus comp192084_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000697 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000006971.355e-73100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s110:44333... [more]
EMLSAP000000017161.168e-1686.49pep:novel supercontig:LSalAtl2s:LSalAtl2s1297:2928... [more]
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BLAST of EMLSAG00000000697 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000697 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000697 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000697 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s110supercontigLSalAtl2s110:443333..446119 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s110-snap-gene-4.25
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000697 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000697EMLSAT00000000697-696544Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s110:443333..446119+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000697-683463 ID=EMLSAG00000000697-683463|Name=EMLSAG00000000697|organism=Lepeophtheirus salmonis|type=gene|length=2787bp|location=Sequence derived from alignment at LSalAtl2s110:443333..446119+ (Lepeophtheirus salmonis)
ATGAAGAGCCACCAAAAGGCAATGCTAGCTTATGTTACACGCAGTGCTGA
TGCTGGATGCATTGATACTGAAGTAAAGAAACAGTTTGACAGTGAATCTG
AATACTGGGCGGAAGTTTTTTAAAGAGGGTGGTTGAGATGGTTCCTTTTT
TCAAGACAAGCTACTCAACTCTATTAATAACTATTCTCTGAATAATAATG
AACAGTTGGCAGCGGGAAAAATACAGAAGTGTAGCTACCATATGTTGTTT
CTAATTAGTCTTTTCCTTTTAACAGTTGAATTTGAGAATGGAGCAAACAA
CTATTCTTTTATATGCAGAATGAATTAATTGAATCTTTAAAAGCCAACAT
AGTATTGTATATTGATGTAGTTAATATCTTAAGAGTTTTAAGGTTATCTA
CGATTAATATGATGGAGATAAGTATTTTATATATTTTGTAAGTAAATAAT
AATTTTATCTCTCATTAAGATAGTGTATTTTCTTTCAAGACCTTACTAGA
CTATTCGTGTAAGAGAAAACAACATAGCTTCATCATCTACTTACATACTA
ATCCAGAATGAAGGCTCTTATCCTCTCCATCAACTTAATTATTTTGCTAG
GTCCAGTATGGAGTGAGAATCCTAAAACAATTATTGATCAAAAAGTAATA
AATGAGGTAAGAATTTCTTATAGAAATAGATTCGTGGTTCTTAAATGGGA
GTACGTCTTGGGCAACTTGGAGGCACTCCACGGGGTACTTTGGATCTTGA
AAAAATATTTGTTAAGTGATAGATCACTGAAAAATTGTTGAGACTCCCTG
GAAATCCCTGGAATAGGATAACCAGCAGTCCTCTTTTGATTTATTTTTAC
ATCCTTTACGAATGTTCTGGGATTTTTTTTTTTTCAATTCATGAAATGTC
CGGATTTTTATTGTTTATACCAAGGAATAGTCTCTATAGATGGAACAAGT
ACCCTTTTTTAACTAACCTTGGTCGATTTTAAAAGAGTGTTAAAATCACA
TCGGCGCATTTTTCAAAAATCTTTAAACTGTCACTCACCCCACACTTTGA
GAAAAAGCTCATTTGATGTGTCCCCCTTCAGCTACAATTACAGACTGGAT
ATAAGCTCGGAAGGAGAGGCAGGGGMACCTCCTTGGCATGTTGAAAGAGG
CGTCAGCAAGGGGTAGCACCCCGAAATTAAGGAATTTTTGTTTTTTACAA
GAAAATTTAACATTGGATTTTTTTTTTTAAATTTGATATTCAAAATTTTA
CTTATTTTTTCAAATATTTTTCAAAAAAATAAATTTTGGTGAACTTTAGA
AATTTTTCCCAAAAATTTAATTTTAGTGAACAGCTTGGGATTTTTGAATT
TTTTTTTCAAAAATTTTGATTTTTGAGAATAGCTATGGATTTTTTGAATT
TTTTTTCCAAAAAGGTTCATAGTTTGGGAGTAGCTATAAATTTTTCCAAT
AAGTTGAATATTTTAAATTTTTTTGTTGTTAGTTGTGGATTTTAGAAATT
TTTTAGAAAAAAAAAATCAAAATCCATGGGTGTTCACAATAAATTTTTTT
TTTGGAAGAAAACATTAAATATTAAATTTGTTATAAAAAAAATCACAAAT
CGACAACTAATAACAAATACTTACATTTCTTGGAAAAAGTTGTCAAAAAT
CCATAGTTACTCGGAAAATATTTAACTTTTATTAGGAAAATGTCGAAAST
TTACAGATGTTTAGAAATTTTTTAATTTTTTTTAAAGTTTTTTAGGAGGG
GGGGGGGGCGGGAGGGATGGCTACAGCCGCTCCAGTCCACTCCCTGTGGA
CGCTCTTGATTGAGAATGGACATCTTGACTATGTCCTTGTTTTTTCTATC
TCCCTTGCTTGTAGCTGATCCAATAAAACTCATAAAATTGTCAGTGTTAC
CATGTTGAGGTTTCATTTCTTATAACATGGTGAAAATAGAAACGATTTTC
AACATTAATTATTTCTTAAGTCTAGTAGTTATTTAGTTCTAAGATATAAA
GGACACACCCAAAAATGTGTAATCTACAGACAAATAGATAGATAAACTTT
GGTTTTATAAAATAGATTTATAGAATATGTATATTTTTGTAACGAATTAA
AGTCTTGAGAAATTAATTGATGTTTCATTTGTGTAGATATGGCAAATACC
CTATCAAAAGTTTCTGAACCTGAAAAAAGAGGCTGGAACATATGTAAGTA
TTGTGTAAATTTTATCTTCATAATTAATTTATTTGTATTATTTTGTTAGA
GTTGTGGGGATTGTCAGAAGAAAGTTACAGATTTGTTGATTCCTTCACAG
TCGAATAAGAAGAATCCAGATATTAAGCCATTCATCTTGAAGCTAGTTAA
AATGATTAAAGCTGTCAATGAATGCATTCCTTGTCTATGTAAAGCAGTGA
ATCGAAAACGTGGGATTTCTTTTGAGGGATGTGAATCCTTTGGTTTTTAA
TGTTAAATATTATGTACCTATATATAGGTACATAACGTGTCTTTGAGTTT
TAATAACTTGAAAATAAATTGTAATTAAATAATGAATTAATTAATATATA
TTTATCAATTTTTTTTGTACAATATGCAAATAACATTTTTGTTTGTAAGG
ATAATTTTGATTCATCTTCTCAGCGTTGTTCATGTTGGTCATAAGCGAAA
GTGCGCCCGCTACATATAGGGTAGAATAACTGAGAAATTACTATAATGAC
CAAAGATGTTCAAAAAGTTATTATAAAAGAGAGTTGTTACCTGATTCAGG
ACGAGTCCTCCCAGTCTTAATATAAGTTTTATACCCA
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